NO06G04200, NO06G04200 (gene) Nannochloropsis oceanica

Overview
NameNO06G04200
Unique NameNO06G04200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1540
Alignment locationchr6:1170260..1171799 +

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Properties
Property NameValue
DescriptionATP synthase mitochondrial F1 complex assembly factor 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1170260..1171799 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0065003protein-containing complex assembly
Vocabulary: INTERPRO
TermDefinition
IPR010591ATP11
Homology
BLAST of NO06G04200 vs. NCBI_GenBank
Match: GAX96514.1 (Hypothetical protein PINS_004398 [Pythium insidiosum])

HSP 1 Score: 159.1 bits (401), Expect = 2.000e-35
Identity = 73/185 (39.46%), Postives = 120/185 (64.86%), Query Frame = 0
Query:   85 FTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYVRGVRKPDPPKKAPSP 270
            F++PAPR L  I+K+ L+   EP EI+ +W+ YH E+ D +A+T+ A +F  +KDRA+++  F++PV+R+ G+  ++ QFQD+CFL T+LE F++NP  A P L ++L+D  +  K LGL+R DV + L + E E L+ QL+  Y+   L++ +  FN+ P  F FE Y + + +  P ++   P
Sbjct:  447 FSFPAPRTLQQIVKLELLENEEPAEIQRIWENYHAEKDDCIATTMSAAEFNAIKDRARSAPFFVFPVYRQGGFFNMLCQFQDTCFLITYLEAFKENPGLAPPCLTVSLFDNLLDKKELGLIRADVVNMLDKAESEKLLNQLLASYSDESLFQWVDKFNNRPNEFDFEAYRKELEQCWPRRRRSMP 631          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: EJY70423.1 (hypothetical protein OXYTRI_08827 (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 154.1 bits (388), Expect = 6.400e-34
Identity = 73/181 (40.33%), Postives = 114/181 (62.98%), Query Frame = 0
Query:   74 SSPFSFQHRS-VFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKY 254
            +S   F  R+  FTYP PRKL +I+++ L  K +P +I+E+W +YH  +   ++  I  Q +  L    + S +F+YPV +E+GY  L+SQ Q   F+FT+LEDF+KNP  A P+L LT +DE +  K + L+RGDV   LT++EGE ++ +L+  Y     Y+ +  FNH P+ F++E+Y
Sbjct:    2 NSLLQFSRRNFAFTYPCPRKLREIVRISLFEKEQPSKIEEVWNDYHNAKPHVVSKVITTQHYMQLLSNGQHSPMFIYPVPKEAGYFMLLSQNQQKSFIFTYLEDFKKNPLAANPYLVLTCFDELVRSKGIALIRGDVIGQLTKDEGETIMNKLLNSYLIDSQYERVKQFNHTPQQFNYEEY 182          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: XP_009534752.1 (hypothetical protein PHYSODRAFT_355818 [Phytophthora sojae] >EGZ09891.1 hypothetical protein PHYSODRAFT_355818 [Phytophthora sojae])

HSP 1 Score: 148.7 bits (374), Expect = 2.700e-32
Identity = 67/169 (39.64%), Postives = 115/169 (68.05%), Query Frame = 0
Query:   85 FTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKY 254
            F+YP  R L  I+K+ L+   +  +I+ +W+E+H ++ DA+A+T+ A +F+ L  RA+A+  F++PV+R+ G+  ++ QFQ SCFL T+LE F++NPS A P + ++LY++ +A K L L+R DV + L ++E + L+ QL+  Y   +LY+ +  FN++P+ F FE Y
Sbjct:   34 FSYPGARSLEQIVKLELLENEQAPQIRSIWEEFHADKDDAVATTLGADEFQALVKRAEAAPYFIFPVYRQEGFFNMLCQFQQSCFLVTYLEAFKENPSAAPPCVAVSLYEDLLAKKELTLVRADVINMLDKKESQLLLQQLLTSYQDDKLYEHVDKFNNKPEQFDFETY 202          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: ETI55193.1 (hypothetical protein F443_02118 [Phytophthora parasitica P1569] >ETM54698.1 hypothetical protein L914_02013 [Phytophthora parasitica] >KUF77793.1 ATP synthase mitochondrial F1 complex assembly factor 1 [Phytophthora nicotianae])

HSP 1 Score: 148.3 bits (373), Expect = 3.500e-32
Identity = 72/192 (37.50%), Postives = 120/192 (62.50%), Query Frame = 0
Query:   62 HARSFPLVHAPSSSPFSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKY 254
            HARSF   +A +           F+YP  R L  I+K+ L+   +  +I+ +W+E+H ++ DA+A+T+   +F+ L  RA+A+  F++PV+R+ G+  ++ QFQ SCFL T+LE F++NPS A P + ++LYD+ +  K L L+R DV + L ++E + L+ QL+  Y   +LY+ +  FN++P  F FE Y
Sbjct:   18 HARSFANSNADAG----------FSYPGARSLEQIVKMELLESEQAPKIRSIWEEFHADKDDAVATTLDVSEFQALVKRAEAAPYFIFPVYRQEGFFNMLCQFQQSCFLITYLEAFKENPSAAPPCVAVSLYDDLLTKKELALVRADVINMLDKKESQLLLKQLLASYQDDQLYEHVDMFNNKPDQFDFEAY 199          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: XP_002998537.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY69890.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 148.3 bits (373), Expect = 3.500e-32
Identity = 73/192 (38.02%), Postives = 119/192 (61.98%), Query Frame = 0
Query:   62 HARSFPLVHAPSSSPFSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKY 254
            HARSF           S +  S F+YP  R L  I+K+ L+   +  +I+ +W+E+H ++ DA+A+T+   +F+ L  RA+A+  F++PV+R+ G+  ++ QFQ SCFL T+LE F++NPS A P + ++LYD+ +  K L L+R DV + L ++E + L+ QL+  Y   +LY  +  FN++P  F FE Y
Sbjct:   18 HARSFA----------SSKSGSGFSYPGARSLEQIVKMELLESEQAPKIRNIWEEFHADKDDAVATTLDVSEFQSLVKRAEAAPYFIFPVYRQEGFFNMLCQFQQSCFLITYLEAFKENPSAAPPCVAISLYDDLLTKKELALVRADVINMLDKKESQLLLKQLLASYQDDQLYDHVDKFNNKPDHFDFEAY 199          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: POM78859.1 (ATP11 domain containing hypothetical protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 146.7 bits (369), Expect = 1.000e-31
Identity = 66/169 (39.05%), Postives = 112/169 (66.27%), Query Frame = 0
Query:   85 FTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKY 254
            F+YP  R L  I+K+ L+   +  +I+ +W+E+H ++ DA+A+T+ A +F+ L  RA+++  F++PV+R+ G+  ++ QFQ SCFL T+LE F++NPS A P + ++LYD  +  K L L+R DV + L ++E + L+ QL+  Y   +LY+ +  FN++P  F FE Y
Sbjct:   34 FSYPGARSLEQIVKLELLENEQAPKIRSIWEEFHADKDDAVATTLEAHEFQSLVKRAESAPYFIFPVYRQEGFFNMLCQFQQSCFLVTYLEAFKENPSAAPPCVAVSLYDNLLESKMLTLVRADVINMLDKKESQLLLKQLLASYQDDKLYEHVDKFNNKPDQFDFETY 202          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: XP_008915793.1 (hypothetical protein PPTG_19190 [Phytophthora parasitica INRA-310] >ETM01493.1 hypothetical protein L917_01939 [Phytophthora parasitica] >ETM98912.1 hypothetical protein PPTG_19190 [Phytophthora parasitica INRA-310] >ETO83924.1 hypothetical protein F444_02135 [Phytophthora parasitica P1976] >ETP52999.1 hypothetical protein F442_02075 [Phytophthora parasitica P10297])

HSP 1 Score: 146.4 bits (368), Expect = 1.300e-31
Identity = 72/192 (37.50%), Postives = 120/192 (62.50%), Query Frame = 0
Query:   62 HARSFPLVHAPSSSPFSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKY 254
            HARSF   +A +           F+YP  R L  I+K+ L+   +  +I+ +W+E+H ++ DA+A+T+   +F+ L  RA+A+  F++PV+R+ G+  ++ QFQ SCFL T+LE F++NPS A P + ++LYD+ +  K L L+R DV + L ++E + L+ QL+  Y   +LY+ +  FN++P  F FE Y
Sbjct:   18 HARSFANSNADAG----------FSYPGARSLEQIVKMELLEGEQAPKIRSIWEEFHADKDDAVATTLDVIEFQALVKRAEAAPYFIFPVYRQEGFFNMLCQFQQSCFLITYLEAFKENPSAAPPCVAVSLYDDLLTKKELALVRADVINMLDKKESQLLLKQLLASYQDDQLYEHVDMFNNKPDQFDFEAY 199          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: ETK95019.1 (hypothetical protein L915_02027 [Phytophthora parasitica] >ETL48423.1 hypothetical protein L916_01984 [Phytophthora parasitica] >ETP25000.1 hypothetical protein F441_02098 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 146.0 bits (367), Expect = 1.700e-31
Identity = 71/192 (36.98%), Postives = 120/192 (62.50%), Query Frame = 0
Query:   62 HARSFPLVHAPSSSPFSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKY 254
            HARSF   +A +           F+YP  R L  I+K+ L+   +  +I+ +W+E+H ++ DA+A+T+   +F+ L  RA+A+  F++PV+R+ G+  ++ QFQ SCFL T+LE F++NPS A P + ++LYD+ +  K L L+R D+ + L ++E + L+ QL+  Y   +LY+ +  FN++P  F FE Y
Sbjct:   18 HARSFANSNADAG----------FSYPGARSLEQIVKMELLEGEQAPKIRSIWEEFHADKDDAVATTLDVIEFQALVKRAEAAPYFIFPVYRQEGFFNMLCQFQQSCFLITYLEAFKENPSAAPPCVAVSLYDDLLTKKELALVRADIINMLDKKESQLLLKQLLASYQDDQLYEHVDMFNNKPDQFDFEAY 199          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: CDW90570.1 (atp11 protein [Stylonychia lemnae])

HSP 1 Score: 146.0 bits (367), Expect = 1.700e-31
Identity = 67/171 (39.18%), Postives = 106/171 (61.99%), Query Frame = 0
Query:   85 FTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYVR 256
            FTYP PRKL +I+K+ L  K  P  I E+W +YH  +  A++  IP   +  L    + S +F++PV +++GY  L+SQ Q   F+FT+LEDF+KNP  A P+L LT +DE +  K + L+RGDV   L + E + ++ +L+  Y     ++T+  FNH+P+ F++E Y +
Sbjct:   14 FTYPCPRKLREIVKISLFEKETPEVISEIWDDYHNTKAHAISKVIPQSLYLRLLSNGQTSPMFIFPVPKDAGYFMLLSQNQQKSFIFTYLEDFKKNPLTANPYLVLTCFDELVRTKGVALIRGDVIGQLNKNEAKTVLEKLLNSYLIDSQFETIKQFNHQPQQFNYENYTQ 184          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: OWZ03917.1 (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 143.7 bits (361), Expect = 8.600e-31
Identity = 65/169 (38.46%), Postives = 113/169 (66.86%), Query Frame = 0
Query:   85 FTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKY 254
            F+YP  R L  ++K+ L+   +  +I+ +W+++H ++ DA+A+T+ A +F+ L  RA+A+  F++PV+R+ G+  ++ QFQ SCFL T+LE F++NPS A P + ++LYD+ +  K L L+R DV + L ++E + L+ QL+  Y   +LY+ +  FN++P  F FE Y
Sbjct:   34 FSYPGARSLEQLVKLELLDNEQTPQIRSIWEKFHADKDDAVAATLDANEFQSLVKRAEAAPYFIFPVYRQDGFFNMLCQFQQSCFLVTYLEAFKENPSAAPPCVAVSLYDDLLDKKELTLVRADVINMLDKKETQLLLKQLLASYQDDKLYEHVDKFNNQPDQFDFEAY 202          
The following BLAST results are available for this feature:
BLAST of NO06G04200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX96514.12.000e-3539.46Hypothetical protein PINS_004398 [Pythium insidios... [more]
EJY70423.16.400e-3440.33hypothetical protein OXYTRI_08827 (macronuclear) [... [more]
XP_009534752.12.700e-3239.64hypothetical protein PHYSODRAFT_355818 [Phytophtho... [more]
ETI55193.13.500e-3237.50hypothetical protein F443_02118 [Phytophthora para... [more]
XP_002998537.13.500e-3238.02conserved hypothetical protein [Phytophthora infes... [more]
POM78859.11.000e-3139.05ATP11 domain containing hypothetical protein [Phyt... [more]
XP_008915793.11.300e-3137.50hypothetical protein PPTG_19190 [Phytophthora para... [more]
ETK95019.11.700e-3136.98hypothetical protein L915_02027 [Phytophthora para... [more]
CDW90570.11.700e-3139.18atp11 protein [Stylonychia lemnae][more]
OWZ03917.18.600e-3138.46putative mitochondrial protein [Phytophthora megak... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000054NSK000054Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04200.1NO06G04200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605066gene_9593Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04200.1NO06G04200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04200 ID=NO06G04200|Name=NO06G04200|organism=Nannochloropsis oceanica|type=gene|length=1540bp
ATGCACAACTCCCCACTCACACAGGCGCCGGAAGGAAAGCAACGACACGA
CCGGATGACGACGGCCTCGGTCTTGCTCCGTCGAGGGGCCATCGCCTTTC
CTGCCGCCCGCAAACGTGTTTCCTGCGCTTTAGCCTCCTCTCTCCCAGCA
GCATCGGCAGCATCAGCAGCGCACCTCCCCATCCACGCCCGCTCTTTTCC
CCTCGTCCATGCTCCCTCCTCCTCTCCATTCTCCTTTCAGCATCGATCGG
TCTTCACCTATCCCGCGCCGCGGAAGCTGACCGATATCATGAAAGTGCCT
CTAGTCCGGAAGTGCGAGCCGGTGGAGATCAAGgtaaggagggaggaggg
gggcgcgtaggagtgaagggtggaagaaagggacgaacttctgaagagca
cgaatctattctccttcattctgccccctgagttattcgtcctccgtgct
catcgcccttccgccctccttccttccctccttccctcccctccttccct
cccctccttcccttttcatccactccgtagGAAATGTGGCAGGAATACCA
CAAGGAGCGAAGAGATGCGTTGGCAAGTACCATTCCCGCGCAGCAATTTA
AGATCCTGAAGGACCGAGCCAAGGCCAGgtgtgtgtgaatggaggaaggg
agggggggggaacggaggcgaagcttcaggaacaaccgtcggtttaaatt
cacgtttttctgtgtcgatttccctgggcaagttgccacgagaacgttat
caaatgacgtttactcacaccccctctgctttgatgtcacgtctgcgaca
ctcgaccgttcacaccacacgtccctccctccctccctctccctccctcc
agCCGGGTTTTCCTCTACCCCGTATTCCGGGAGTCAGGCTACATGACCCT
CATCTCTCAGTTCCAAGATTCATGCTTCCTCTTCACCTTCTTAGgtcatt
tgaaaatagggagggagggaggatgggagggcgggaggggaaaggggggc
agtcgtagactttccagagttccacacaattctcacacttccctctcccc
ttccctccttccctcccttccttccttagAGGACTTCCGTAAGAATCCAA
GCGGCGCGACGCCCTGGCTGTGCCTGACTCTGTACGACGAGTTCATGGCC
GACAAGTGCCTGGGATTACTGCGAGGCGACGTGGGTCACCACCTCACACG
GGAGgtagggaaagaggaagggagggagggaaggagggttgcgacatgat
gaggtgttttagttgtttacctgtttacctgtggtacgacgtaggaagtc
tttttctcaatcgccccgccctccttcccccccgcacccccgccctccct
ccctcctttcttgccccagGAGGGAGAGTACCTCATCACACAGCTGGTGG
AGCACTACACACACGCGGAGCTTTATAAGACCTTGTGGACCTTCAACCAC
GAGCCCAAAAGTTTCTCGTTCGAGAAGTATGTCCGCGGTGTCCGCAAGCC
CGACCCGCCCAAGAAGGCTCCGTCGCCCATCATCACCTGA
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protein sequence of NO06G04200.1

>NO06G04200.1-protein ID=NO06G04200.1-protein|Name=NO06G04200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MHNSPLTQAPEGKQRHDRMTTASVLLRRGAIAFPAARKRVSCALASSLPA
ASAASAAHLPIHARSFPLVHAPSSSPFSFQHRSVFTYPAPRKLTDIMKVP
LVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYP
VFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADK
CLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSF
EKYVRGVRKPDPPKKAPSPIIT*
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Synonyms
Publications