NO06G04200.1, NO06G04200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04200.1
Unique NameNO06G04200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr6:1170260..1171799 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1170260..1171799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04200.1 vs.
Match: GAX96514.1 (Hypothetical protein PINS_004398 [Pythium insidiosum])

HSP 1 Score: 159.1 bits (401), Expect = 2.000e-35
Identity = 73/185 (39.46%), Postives = 120/185 (64.86%), Query Frame = 0 
Query:   85 FTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYVRGVRKPDPPKKAPSP 270
            F++PAPR L  I+K+ L+   EP EI+ +W+ YH E+ D +A+T+ A +F  +KDRA+++  F++PV+R+ G+  ++ QFQD+CFL T+LE F++NP  A P L ++L+D  +  K LGL+R DV + L + E E L+ QL+  Y+   L++ +  FN+ P  F FE Y + + +  P ++   P
Sbjct:  447 FSFPAPRTLQQIVKLELLENEEPAEIQRIWENYHAEKDDCIATTMSAAEFNAIKDRARSAPFFVFPVYRQGGFFNMLCQFQDTCFLITYLEAFKENPGLAPPCLTVSLFDNLLDKKELGLIRADVVNMLDKAESEKLLNQLLASYSDESLFQWVDKFNNRPNEFDFEAYRKELEQCWPRRRRSMP 631
The following BLAST results are available for this feature:
BLAST of NO06G04200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX96514.12.000e-3539.46Hypothetical protein PINS_004398 [Pythium insidios... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04200NO06G04200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04200.1NO06G04200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04200.1.cds1NO06G04200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04200.1.cds2NO06G04200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04200.1.cds3NO06G04200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04200.1.cds4NO06G04200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04200.1.cds5NO06G04200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04200.1 ID=NO06G04200.1|Name=NO06G04200.1|organism=Nannochloropsis oceanica|type=mRNA|length=819bp
ATGCACAACTCCCCACTCACACAGGCGCCGGAAGGAAAGCAACGACACGA
CCGGATGACGACGGCCTCGGTCTTGCTCCGTCGAGGGGCCATCGCCTTTC
CTGCCGCCCGCAAACGTGTTTCCTGCGCTTTAGCCTCCTCTCTCCCAGCA
GCATCGGCAGCATCAGCAGCGCACCTCCCCATCCACGCCCGCTCTTTTCC
CCTCGTCCATGCTCCCTCCTCCTCTCCATTCTCCTTTCAGCATCGATCGG
TCTTCACCTATCCCGCGCCGCGGAAGCTGACCGATATCATGAAAGTGCCT
CTAGTCCGGAAGTGCGAGCCGGTGGAGATCAAGGAAATGTGGCAGGAATA
CCACAAGGAGCGAAGAGATGCGTTGGCAAGTACCATTCCCGCGCAGCAAT
TTAAGATCCTGAAGGACCGAGCCAAGGCCAGCCGGGTTTTCCTCTACCCC
GTATTCCGGGAGTCAGGCTACATGACCCTCATCTCTCAGTTCCAAGATTC
ATGCTTCCTCTTCACCTTCTTAGAGGACTTCCGTAAGAATCCAAGCGGCG
CGACGCCCTGGCTGTGCCTGACTCTGTACGACGAGTTCATGGCCGACAAG
TGCCTGGGATTACTGCGAGGCGACGTGGGTCACCACCTCACACGGGAGGA
GGGAGAGTACCTCATCACACAGCTGGTGGAGCACTACACACACGCGGAGC
TTTATAAGACCTTGTGGACCTTCAACCACGAGCCCAAAAGTTTCTCGTTC
GAGAAGTATGTCCGCGGTGTCCGCAAGCCCGACCCGCCCAAGAAGGCTCC
GTCGCCCATCATCACCTGA
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protein sequence of NO06G04200.1

>NO06G04200.1-protein ID=NO06G04200.1-protein|Name=NO06G04200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MHNSPLTQAPEGKQRHDRMTTASVLLRRGAIAFPAARKRVSCALASSLPA
ASAASAAHLPIHARSFPLVHAPSSSPFSFQHRSVFTYPAPRKLTDIMKVP
LVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYP
VFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADK
CLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSF
EKYVRGVRKPDPPKKAPSPIIT*
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mRNA from alignment at chr6:1170260..1171799+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04200.1 ID=NO06G04200.1|Name=NO06G04200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp|location=Sequence derived from alignment at chr6:1170260..1171799+ (Nannochloropsis oceanica)
ATGCACAACTCCCCACTCACACAGGCGCCGGAAGGAAAGCAACGACACGA
CCGGATGACGACGGCCTCGGTCTTGCTCCGTCGAGGGGCCATCGCCTTTC
CTGCCGCCCGCAAACGTGTTTCCTGCGCTTTAGCCTCCTCTCTCCCAGCA
GCATCGGCAGCATCAGCAGCGCACCTCCCCATCCACGCCCGCTCTTTTCC
CCTCGTCCATGCTCCCTCCTCCTCTCCATTCTCCTTTCAGCATCGATCGG
TCTTCACCTATCCCGCGCCGCGGAAGCTGACCGATATCATGAAAGTGCCT
CTAGTCCGGAAGTGCGAGCCGGTGGAGATCAAGGTAAGGAGGGAGGAGGG
GGGCGCGTAGGAGTGAAGGGTGGAAGAAAGGGACGAACTTCTGAAGAGCA
CGAATCTATTCTCCTTCATTCTGCCCCCTGAGTTATTCGTCCTCCGTGCT
CATCGCCCTTCCGCCCTCCTTCCTTCCCTCCTTCCCTCCCCTCCTTCCCT
CCCCTCCTTCCCTTTTCATCCACTCCGTAGGAAATGTGGCAGGAATACCA
CAAGGAGCGAAGAGATGCGTTGGCAAGTACCATTCCCGCGCAGCAATTTA
AGATCCTGAAGGACCGAGCCAAGGCCAGGTGTGTGTGAATGGAGGAAGGG
AGGGGGGGGGAACGGAGGCGAAGCTTCAGGAACAACCGTCGGTTTAAATT
CACGTTTTTCTGTGTCGATTTCCCTGGGCAAGTTGCCACGAGAACGTTAT
CAAATGACGTTTACTCACACCCCCTCTGCTTTGATGTCACGTCTGCGACA
CTCGACCGTTCACACCACACGTCCCTCCCTCCCTCCCTCTCCCTCCCTCC
AGCCGGGTTTTCCTCTACCCCGTATTCCGGGAGTCAGGCTACATGACCCT
CATCTCTCAGTTCCAAGATTCATGCTTCCTCTTCACCTTCTTAGGTCATT
TGAAAATAGGGAGGGAGGGAGGATGGGAGGGCGGGAGGGGAAAGGGGGGC
AGTCGTAGACTTTCCAGAGTTCCACACAATTCTCACACTTCCCTCTCCCC
TTCCCTCCTTCCCTCCCTTCCTTCCTTAGAGGACTTCCGTAAGAATCCAA
GCGGCGCGACGCCCTGGCTGTGCCTGACTCTGTACGACGAGTTCATGGCC
GACAAGTGCCTGGGATTACTGCGAGGCGACGTGGGTCACCACCTCACACG
GGAGGTAGGGAAAGAGGAAGGGAGGGAGGGAAGGAGGGTTGCGACATGAT
GAGGTGTTTTAGTTGTTTACCTGTTTACCTGTGGTACGACGTAGGAAGTC
TTTTTCTCAATCGCCCCGCCCTCCTTCCCCCCCGCACCCCCGCCCTCCCT
CCCTCCTTTCTTGCCCCAGGAGGGAGAGTACCTCATCACACAGCTGGTGG
AGCACTACACACACGCGGAGCTTTATAAGACCTTGTGGACCTTCAACCAC
GAGCCCAAAAGTTTCTCGTTCGAGAAGTATGTCCGCGGTGTCCGCAAGCC
CGACCCGCCCAAGAAGGCTCCGTCGCCCATCATCACCTGA
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Coding sequence (CDS) from alignment at chr6:1170260..1171799+

>NO06G04200.1 ID=NO06G04200.1|Name=NO06G04200.1|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr6:1170260..1171799+ (Nannochloropsis oceanica)
ATGCACAACTCCCCACTCACACAGGCGCCGGAAGGAAAGCAACGACACGA
CCGGATGACGACGGCCTCGGTCTTGCTCCGTCGAGGGGCCATCGCCTTTC
CTGCCGCCCGCAAACGTGTTTCCTGCGCTTTAGCCTCCTCTCTCCCAGCA
GCATCGGCAGCATCAGCAGCGCACCTCCCCATCCACGCCCGCTCTTTTCC
CCTCGTCCATGCTCCCTCCTCCTCTCCATTCTCCTTTCAGCATCGATCGG
TCTTCACCTATCCCGCGCCGCGGAAGCTGACCGATATCATGAAAGTGCCT
CTAGTCCGGAAGTGCGAGCCGGTGGAGATCAAGGAAATGTGGCAGGAATA
CCACAAGGAGCGAAGAGATGCGTTGGCAAGTACCATTCCCGCGCAGCAAT
TTAAGATCCTGAAGGACCGAGCCAAGGCCAGCCGGGTTTTCCTCTACCCC
GTATTCCGGGAGTCAGGCTACATGACCCTCATCTCTCAGTTCCAAGATTC
ATGCTTCCTCTTCACCTTCTTAGAGGACTTCCGTAAGAATCCAAGCGGCG
CGACGCCCTGGCTGTGCCTGACTCTGTACGACGAGTTCATGGCCGACAAG
TGCCTGGGATTACTGCGAGGCGACGTGGGTCACCACCTCACACGGGAGGA
GGGAGAGTACCTCATCACACAGCTGGTGGAGCACTACACACACGCGGAGC
TTTATAAGACCTTGTGGACCTTCAACCACGAGCCCAAAAGTTTCTCGTTC
GAGAAGTATGTCCGCGGTGTCCGCAAGCCCGACCCGCCCAAGAAGGCTCC
GTCGCCCATCATCACCTGA
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Synonyms
Publications