NO06G04090, NO06G04090 (gene) Nannochloropsis oceanica

Overview
NameNO06G04090
Unique NameNO06G04090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4496
Alignment locationchr6:1142087..1146582 +

Link to JBrowse

Properties
Property NameValue
DescriptionDiaminopimelate epimerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1142087..1146582 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009089lysine biosynthetic process via diaminopimelate
GO:0009089lysine biosynthetic process via diaminopimelate
Vocabulary: Molecular Function
TermDefinition
GO:0008837diaminopimelate epimerase activity
GO:0008837diaminopimelate epimerase activity
Vocabulary: INTERPRO
TermDefinition
IPR001653DAP_epimerase_DapF
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
BLAST of NO06G04090 vs. NCBI_GenBank
Match: OAE23994.1 (hypothetical protein AXG93_1330s1030 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 368.6 bits (945), Expect = 2.200e-98
Identity = 183/309 (59.22%), Postives = 229/309 (74.11%), Query Frame = 0
Query:   49 RATAMAAGSSLRMQQAAATTGIDVPKISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPV---DLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGGT 355
            RA AM+ G   ++   A+   +    + F KYHG+GNDFIL+DNR+S  P +S E   ++C R++ +GADGVIF LPG  G+DY+MRIYNSDGSEPEMCGNGIRCMAKF+ +LEG     ESRSY+I TLAG++VP +  DG + VDMGTPIL+  K+PTTL    DG VV+APL VAG++W VT VSMGNPH V  +   + V    LA++GP  E + VFP KTN EFVQV++P  LRM+VWERGAGPTLACGTGACAL VAA+L G+ + R+  V+LPGG LQIEWR+SD+HVYMTG AE+ + GT
Sbjct:   64 RAQAMSVGVETKI---ASKADVGESSLQFVKYHGLGNDFILVDNRKSSTPCISPEAAAKLCDRNFGVGADGVIFVLPGINGSDYTMRIYNSDGSEPEMCGNGIRCMAKFVAELEGIT---ESRSYKIDTLAGLIVPKLMDDGQICVDMGTPILEAKKIPTTLEPTQDGAVVKAPLVVAGRSWNVTCVSMGNPHCVALLDANEDVYSLPLAEIGPLFEKNEVFPAKTNTEFVQVLSPSHLRMRVWERGAGPTLACGTGACALVVAAVLEGRAE-RDCLVELPGGPLQIEWRESDNHVYMTGPAEIAFRGT 365          
BLAST of NO06G04090 vs. NCBI_GenBank
Match: PTQ50168.1 (hypothetical protein MARPO_0001s0200 [Marchantia polymorpha] >PTQ50169.1 hypothetical protein MARPO_0001s0200 [Marchantia polymorpha])

HSP 1 Score: 368.6 bits (945), Expect = 2.200e-98
Identity = 183/309 (59.22%), Postives = 229/309 (74.11%), Query Frame = 0
Query:   49 RATAMAAGSSLRMQQAAATTGIDVPKISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPV---DLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGGT 355
            RA AM+ G   ++   A+   +    + F KYHG+GNDFIL+DNR+S  P +S E   ++C R++ +GADGVIF LPG  G+DY+MRIYNSDGSEPEMCGNGIRCMAKF+ +LEG     ESRSY+I TLAG++VP +  DG + VDMGTPIL+  K+PTTL    DG VV+APL VAG++W VT VSMGNPH V  +   + V    LA++GP  E + VFP KTN EFVQV++P  LRM+VWERGAGPTLACGTGACAL VAA+L G+ + R+  V+LPGG LQIEWR+SD+HVYMTG AE+ + GT
Sbjct:   72 RAQAMSVGVETKI---ASKADVGESSLQFVKYHGLGNDFILVDNRKSSTPCISPEAAAKLCDRNFGVGADGVIFVLPGINGSDYTMRIYNSDGSEPEMCGNGIRCMAKFVAELEGIT---ESRSYKIDTLAGLIVPKLMDDGQICVDMGTPILEAKKIPTTLEPTQDGAVVKAPLVVAGRSWNVTCVSMGNPHCVALLDANEDVYSLPLAEIGPLFEKNEVFPAKTNTEFVQVLSPSHLRMRVWERGAGPTLACGTGACALVVAAVLEGRAE-RDCLVELPGGPLQIEWRESDNHVYMTGPAEIAFRGT 373          
BLAST of NO06G04090 vs. NCBI_GenBank
Match: CBJ32916.1 (diaminopimelate epimerase [Ectocarpus siliculosus])

HSP 1 Score: 363.6 bits (932), Expect = 7.000e-97
Identity = 175/279 (62.72%), Postives = 210/279 (75.27%), Query Frame = 0
Query:   75 ISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPVDLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGG 354
            + FSKY G+GNDFIL+DNR+  +P+L+AE+   +C R Y IG DGVIFALPG +  DYSMRI NSDGSEPEMCGNGIRCMA+FL  LEG     +   Y+I+TLAG ++P+ R DGLVTVDMG P L+G KVP+TLP   DG V++ P++V GK W VT VSMGNPHAV+FVP +D +DL  +GPQ E HP FP K N EFVQV+    ++M VWERG G T ACGTGACAL VA++LAG  D R+ TV LPGGDLQIEWR+SD  VYMTG AEL + G
Sbjct:    7 VPFSKYQGLGNDFILVDNREETEPMLTAEESASLCDRRYGIGGDGVIFALPGSDEMDYSMRIINSDGSEPEMCGNGIRCMARFLADLEGK----KKAEYKIHTLAGTIIPMAREDGLVTVDMGPPELNGPKVPSTLPTNDDGVVLKEPIKVDGKDWEVTCVSMGNPHAVVFVPDVDALDLPTIGPQFETHPSFPAKINTEFVQVLNRGHVKMVVWERGCGITQACGTGACALVVASVLAGLAD-RKCTVTLPGGDLQIEWRESDGKVYMTGPAELAFQG 280          
BLAST of NO06G04090 vs. NCBI_GenBank
Match: WP_015184189.1 (diaminopimelate epimerase [Microcoleus sp. PCC 7113] >AFZ20053.1 diaminopimelate epimerase [Microcoleus sp. PCC 7113])

HSP 1 Score: 358.2 bits (918), Expect = 2.900e-95
Identity = 168/285 (58.95%), Postives = 214/285 (75.09%), Query Frame = 0
Query:   74 KISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPVDLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGGTIGAL 359
            +I F+KYHG+GNDFILIDNR   +PI+++EQ  ++C RH+ IGADGVIFALPG+E  DY+MRI+NSDGSEPEMCGNGIRC A+F+  LEG D   E   YRI+TLAG+++P + G+G V VDMG P L  A++PTTL A  + + +  PL+VAG++W VT VSMGNPH + FV  +  + L  +GPQ E HP FP++TN EF+QVV P  L+M+VWERGAG TLACGTGACA  VA +L GK+D R+ TV+LPGG L+IEW + D  VYMTG AE V+ G +  L
Sbjct:    2 EIEFTKYHGLGNDFILIDNRADTQPIITSEQAVQLCDRHFGIGADGVIFALPGEEAGDYTMRIFNSDGSEPEMCGNGIRCFAQFIADLEGADAKSE---YRIHTLAGVIIPKIEGEGKVKVDMGMPQLLAAQIPTTL-ADAEQKAIAVPLQVAGQSWEVTCVSMGNPHCITFVEDVAAIPLEAIGPQFEHHPAFPQRTNTEFIQVVRPDYLKMRVWERGAGVTLACGTGACAAVVAGVLTGKSD-RKATVELPGGCLEIEWAQQDQRVYMTGPAERVFRGKVSQL 281          
BLAST of NO06G04090 vs. NCBI_GenBank
Match: WP_094672109.1 (diaminopimelate epimerase [Hydrocoleum sp. CS-953] >OZH55146.1 diaminopimelate epimerase [Hydrocoleum sp. CS-953])

HSP 1 Score: 358.2 bits (918), Expect = 2.900e-95
Identity = 171/281 (60.85%), Postives = 218/281 (77.58%), Query Frame = 0
Query:   75 ISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPVDLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGGTI 356
            IS +KYHG+GNDFILIDNR   +PIL+ EQ  ++C R++ IGADGVIFALPG+E ADY+MRI+NSDGSEPEMCGNGIRC+AKF+ +LE    N +   Y IYT AG++VP ++GDG VTVDMG P L  +++PTTL + P+ +VV   LEVAGK+W VT VSMGNPH + FV  +  +DLAK+GP+ E HPVFP++TN EF+QV++P  ++M+VWERGAG TLACGTGACA  VA +L  K ++R VTV+LPGG L+IEW  +D  +YMTG AE V+ G I
Sbjct:    3 ISLTKYHGLGNDFILIDNRHQSQPILTPEQAIKLCDRNFGIGADGVIFALPGEEQADYTMRIFNSDGSEPEMCGNGIRCLAKFIAELE----NNKKTKYNIYTGAGLIVPELQGDGQVTVDMGQPRLLASEIPTTL-SNPNEKVVAQSLEVAGKSWSVTCVSMGNPHCITFVEDVSIIDLAKIGPEFEHHPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQK-NERLVTVELPGGCLEIEWSTTDKKIYMTGPAEKVFTGII 277          
BLAST of NO06G04090 vs. NCBI_GenBank
Match: WP_068510310.1 (diaminopimelate epimerase [Leptolyngbya sp. O-77] >BAU42338.1 Diaminopimelate epimerase 2 [Leptolyngbya sp. O-77])

HSP 1 Score: 357.8 bits (917), Expect = 3.800e-95
Identity = 166/280 (59.29%), Postives = 211/280 (75.36%), Query Frame = 0
Query:   75 ISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPVDLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGGT 355
            I+F+KYHG+GNDFIL+DNRQ  +P ++ EQ  E C RH+ IGADGVIFALPG++G DY+MRI+NSDGSEPEMCGNGIRC+A+F+  LE  +       Y+I+TLAG++ P +  DG +TVDMG P L   ++PTTL A P+ +V+  PLEVAG+TW VT VSMGNPH + FV  +  + L  +GPQ E HP FPK+ N EF+QVV P  L+M+VWERGAG TLACGTGACA  VAA+L  K+D+R  TV+LPGG L IEW ++D H+YMTG A+ V+ GT
Sbjct:    3 IAFTKYHGLGNDFILVDNRQQPEPRITPEQAVEWCDRHFGIGADGVIFALPGQDGTDYTMRIFNSDGSEPEMCGNGIRCLARFIADLEAAETGSPRPVYKIHTLAGLITPRLEADGQITVDMGQPRLLAGEIPTTL-ATPEEKVINLPLEVAGQTWAVTCVSMGNPHCITFVDDVAAIPLEAIGPQFEHHPAFPKRINTEFIQVVRPDYLKMRVWERGAGITLACGTGACASLVAAVLNAKSDRR-ATVELPGGPLLIEWSETDQHLYMTGPAQKVFSGT 280          
BLAST of NO06G04090 vs. NCBI_GenBank
Match: WP_038016163.1 (diaminopimelate epimerase [Synechococcus sp. PCC 7335])

HSP 1 Score: 357.1 bits (915), Expect = 6.600e-95
Identity = 171/282 (60.64%), Postives = 215/282 (76.24%), Query Frame = 0
Query:   75 ISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGE-SRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPVDLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGGTI 356
            + FSKYHG+GNDFIL+DNR S+ P+++ EQ  ++C R++ IGADGVIF LPGKEGADYSMRIYNSDGSEPEMCGNGIRC+AKF+  LE +       +SY ++TLAG++ P ++ DG VTVDMG PIL   ++PTTL   PDG+V++  L VAG+ W VT VSMGNPH + FV  ++ V LA +GP+ E H  FP + N EFV+VV P  LRMKVWERGAGPTLACGTG CAL VAA+L GK D R+ TV+LPGG+L+IEW  +++ VYMTG A LV+ G +
Sbjct:    4 LPFSKYHGLGNDFILMDNRASETPMVTPEQAVDVCDRNFGIGADGVIFVLPGKEGADYSMRIYNSDGSEPEMCGNGIRCLAKFIADLEEEHNEPTLPKSYGVHTLAGIIRPELKPDGQVTVDMGEPILTAREIPTTL-GQPDGKVIDETLTVAGENWQVTCVSMGNPHCITFVDDVEAVPLADIGPRFEHHEAFPARINTEFVEVVRPDFLRMKVWERGAGPTLACGTGTCALVVAAVLNGKCD-RQTTVELPGGNLEIEW-ANNNRVYMTGPATLVFSGDV 282          
BLAST of NO06G04090 vs. NCBI_GenBank
Match: WP_073599640.1 (diaminopimelate epimerase [Hydrococcus rivularis] >OKH23007.1 diaminopimelate epimerase [Hydrococcus rivularis NIES-593])

HSP 1 Score: 357.1 bits (915), Expect = 6.600e-95
Identity = 166/280 (59.29%), Postives = 216/280 (77.14%), Query Frame = 0
Query:   75 ISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPVDLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGGT 355
            I F+KYHG+GNDFIL+DNR   +P++S E   ++C RH+ IGADGVIFALPG++G DY+MRI+N+DGSEPEMCGNGIRC+A+F+ QLEG +  G  +SYRI+TLAG++ P + GD  V+VDMGTP L  A++PTTL   P+ +V+E  LEV GK+W VT VSMGNPH + FV   D + L  +GPQ E HPVFP++TN EF+Q++ P  L+M+VWERGAG TLACGTGACA  VA +L GK+D R  TV+LPGG L+I W ++D+ VYMTG A+ V+ G+
Sbjct:    3 IEFTKYHGLGNDFILLDNRHRSEPLISPEIAVQMCDRHFGIGADGVIFALPGQDGTDYAMRIFNADGSEPEMCGNGIRCLARFIAQLEGTETAG--KSYRIHTLAGVITPRLEGDEQVSVDMGTPQLTAAQIPTTL-GKPEEKVIEQSLEVGGKSWLVTCVSMGNPHCITFVENTDAIVLETIGPQFERHPVFPQRTNTEFIQIIRPDYLKMRVWERGAGATLACGTGACASVVAGVLTGKSD-RLCTVELPGGCLKIHWSETDERVYMTGPAKRVFSGS 278          
BLAST of NO06G04090 vs. NCBI_GenBank
Match: OUC12268.1 (diaminopimelate epimerase [Alkalinema sp. CACIAM 70d])

HSP 1 Score: 356.7 bits (914), Expect = 8.600e-95
Identity = 173/281 (61.57%), Postives = 212/281 (75.44%), Query Frame = 0
Query:   75 ISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPVDLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGGTI 356
            + FSKYHG+GNDFIL+DNR S  PILS EQ +++C RH+ IGADGVIFALPG+ G DY+MRI+NSDGSEPEMCGNGIRCMA+FL  LEGD        Y I+TLAG++ P +  DG +TVDMG P L   ++PTTL A  D + V  PLEVAG+TW VTTVSMGNPH + FV  +  +DL KVGPQ E H VFP++TN EF++VV    L+M+VWERGAG TLACGTGACA  VAA+L  K+D R+ T++LPGG LQIEW  +DD ++MTG AE V+ G +
Sbjct:    3 LQFSKYHGLGNDFILVDNRHSSDPILSPEQAEKLCDRHFGIGADGVIFALPGQNGTDYTMRIFNSDGSEPEMCGNGIRCMARFLADLEGD---AAKSVYTIHTLAGLITPKLEADGQITVDMGKPRLLAGEIPTTLVAA-DAQAVAVPLEVAGQTWAVTTVSMGNPHCITFVEDVAAIDLEKVGPQFEHHSVFPQRTNTEFIEVVDRGYLKMRVWERGAGITLACGTGACASLVAAVLNYKSD-RKATIELPGGPLQIEW-AADDRIFMTGPAERVFVGEV 277          
BLAST of NO06G04090 vs. NCBI_GenBank
Match: WP_009768787.1 (diaminopimelate epimerase [Oscillatoriales cyanobacterium JSC-12] >EKQ67291.1 diaminopimelate epimerase [Oscillatoriales cyanobacterium JSC-12])

HSP 1 Score: 355.5 bits (911), Expect = 1.900e-94
Identity = 170/282 (60.28%), Postives = 211/282 (74.82%), Query Frame = 0
Query:   74 KISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPVDLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGGTI 356
            +I F+KYHG+GNDFIL+DNR S +P L+ EQ  ++C RH+ IGADGVIF LPG+ GADY+MRI+NSDGSEPEMCGNGIRC A+F+ +LE      + RSY IYTL+GM+ P +   G+VTVDMG P L  A++PTTL A PD +V+  PLEV  KTW VT VSMGNPH + FV  +  + L  VGP+ E HP FPKK N EF+QVV    L+M+VWERGAG TLACGTGACA  VAA+L G +D+R  T++LPGG LQIEW  S++H+YMTG AE V+ G +
Sbjct:    2 EIGFTKYHGLGNDFILVDNRASSEPKLTPEQSVKLCDRHFGIGADGVIFVLPGQNGADYTMRIFNSDGSEPEMCGNGIRCFARFVAELENVT---QPRSYNIYTLSGMITPQLESTGMVTVDMGEPRLLAAEIPTTLGA-PDSKVINHPLEVDNKTWEVTCVSMGNPHCITFVEDVSQIPLETVGPKFETHPSFPKKINAEFIQVVRSDYLKMRVWERGAGITLACGTGACASLVAAVLTGHSDRR-TTIELPGGCLQIEWADSNNHLYMTGPAEKVFQGHV 278          
The following BLAST results are available for this feature:
BLAST of NO06G04090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OAE23994.12.200e-9859.22hypothetical protein AXG93_1330s1030 [Marchantia p... [more]
PTQ50168.12.200e-9859.22hypothetical protein MARPO_0001s0200 [Marchantia p... [more]
CBJ32916.17.000e-9762.72diaminopimelate epimerase [Ectocarpus siliculosus][more]
WP_015184189.12.900e-9558.95diaminopimelate epimerase [Microcoleus sp. PCC 711... [more]
WP_094672109.12.900e-9560.85diaminopimelate epimerase [Hydrocoleum sp. CS-953]... [more]
WP_068510310.13.800e-9559.29diaminopimelate epimerase [Leptolyngbya sp. O-77] ... [more]
WP_038016163.16.600e-9560.64diaminopimelate epimerase [Synechococcus sp. PCC 7... [more]
WP_073599640.16.600e-9559.29diaminopimelate epimerase [Hydrococcus rivularis] ... [more]
OUC12268.18.600e-9561.57diaminopimelate epimerase [Alkalinema sp. CACIAM 7... [more]
WP_009768787.11.900e-9460.28diaminopimelate epimerase [Oscillatoriales cyanoba... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000063NSK000063Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04090.1NO06G04090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597898gene_6740Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04090.1NO06G04090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04090 ID=NO06G04090|Name=NO06G04090|organism=Nannochloropsis oceanica|type=gene|length=4496bp
AACGACAGGGCGGCGGGCCAGGCAGACAGGTGCGCGCGCGGGGTGACCGG
GACGCAACAAGGCCCAAGGACCAACACGACTCCCACATCCTCCCCTTCCT
TTCCATGCAAGGAATACACGGTTCCATGACGACTACCACGATAATGAAGT
CCCGCATGCTCCTACTCCTGGGTAGCCTTTGCTTGTTTGCCCCGCTGGCT
CAAGCATTCCTTGCCCCCTCTATCTACATGGCCGCGGCGGTGACCAGACG
GGCGACGGCGATGGCAGCAGGGTCGTCGTTGAGGATGCAGCAGGCGGCCG
CGACGACGGgtacgagggggataagacggggagttcgggaagaggggaaa
gggggacgacagaaatggcagaaaaagagggtattatctgttatattgcg
gcgaaaggatgactgcagattcggatggcggcttgagtatttgaacatgc
caccacaacgcgacatcgcactccagtgccttccctcactcccttccttg
ctctttcctcctatggtttcatttcctctagGCATTGACGTGCCTAAAAT
CTCATTCTCCAAGTACCACGGCATTGGGAATGACTTCATCCTGATCGACA
ACCGCCAGAGCGACAAGCCCATCCTCAGCGCCGAGCAGTGCAAGGAGgta
gacaggaagggagggagagaggaagggaaggagggaaattaaggggtgtc
tgaaggactctaaatgaaccccagacttctctttcggcaatcgcatgctc
ctctgacgaccatcattttattcatctatcactcccttcctccctccctc
cctccctccctccaccccttccgccggctcgccaactttcagATCTGCTC
GCGCCATTATTCAATCGGTGCGGACGGCGTCATCTTCGCTCTACCCGGCA
AGGAGGGTGCTGACTACTCCATGCGCATTTATAACTCTGACGgtacgtgg
tcgagggagtgagggagggagtgagggagggagtgagggagggaaggtgg
gaggacaggaaattgaaaaggagggaggagaacctttgctctttgtgggc
cgcttttcaaagctctcttgggcctccctccctccctccctccctcgtgt
ccagGTTCGGAGCCGGAGATGTGCGGGAATGGCATCCGGTGCATGGCCAA
GTTTCTTCGACAGCTGGAAGgtaggtaggagggagggagggagggaggga
gggagggagggaggaaagtggtgaatgtttttggatgataccttcaggct
taaagaaagaggggggggagaaaacgctgtggagggaaatgacaccgacg
gaaaagacgtgcttttgtgtcgatgagaggaaactgcactcacctcctcc
ctttctccctccctccctccctcctgccttcctcccctcccctccctcaa
gGCGACGACAGGAACGGCGAGTCCCGGTCGTACCGCATCTATACGCTGGC
CGGTATGGTTGTGCCCGTGGTGCGAGGAGATGGGCTCGTCACCGTCGACA
TGGGCACCCCCATCTTGGACGgtgaggagggagggagggagggagtagga
aggaggtcgaatcgacggagggaagcgggttgcactgcggttggctgtgt
gcaggagcattcatttctagtttttctcttccttcctctcttttcccttt
tcttttttctcttcctgaggtgatgcgtgtcaattttttgtccttcatcc
ctcccatatttccaataatattgttttaatcatatttattatattactat
aattatatatattattattatttatattatacatataattattattaata
tattaatattatgattacttagtctttatcccccccgtatcccgattccc
ttgaattcctaatcgcactttgattagGCGCTAAGGTACCCACCACGTTG
CCGGCCGGTCCAGACGGTCGCGTTGTTGAGGCGCCTTTGGAGGTGGCGGG
GAAGACTTGGGGGgtaaggagggagggagggagggagggagggagggagg
gagggagggagggagggagggagggacgaggaggcaggggcaggagtctc
gtcggccggttattccttctcggaccccggcctcgtatcttgtacagccc
ccggtgcttgccttgccctcatccttcgcgcaatatctcaacctccctcc
catcctccctccctccctccctccctccccagGTCACCACCGTGTCGATG
GGCAACCCTCATGCCGTCATTTTCGTGCCCTTCCTCGATCCTGTGGACCT
GGCCAAGGTGGGTCCACAAATTGAGGTGCATCCTGTCTTCCCCAAGAAGA
CCAACGTGGAGTTCGTGCAGgtgggaagggagggagggaggcaggggagg
ggggaaggagggcgacggacggacagagcttgccatttgttttcgggagc
tttgaaagagacgctatttgtctcaacatacctcttaaacaccctccctc
cctccctccgtccctccctccctccccatccctcccttccttcttccctc
cactagGTGGTGGCACCCCATCTCCTTCGCATGAAGGTGTGGGAACGCGG
TGCTGGGCCCACTTTGGCGTGTGGTACCGGGGCATGTGCGTTGACGGTGG
CGGCCATTTTGGCGGGAAAGACGGATAAGAGgtaagcagccagatagagg
ggcggggggaaaggaagggagggagggaaggagggagggaaggagggagg
gaaggagggagggagggagggaaagatgaaggctctgggcttgacgctgg
acatggcggtataggcgtcttggactttccatccattcatctatttccct
tcctttcccccctttccccccttccctatccccctccctccctccctcag
AGAGGTGACTGTGCAGCTACCCGGCGGGGACCTTCAGATTGAGTGGCGAA
AGAGCGACGATCACGTTTATATGACCGgtaaggcgagaagagagggaggg
agggaaggagagagggaagctgtggctgtggacgctgcaggagagagcac
aacaccaaagagcaggaagggagaaacgtgtgccaagtgacgagcaatcc
tcagcatgattcagtggtgtataatgtgatattcgacagtatcaaaatct
aatttatttcctatttgatcatcagcgatgtcgaggaataataattcgtg
aatgggaagacccagtaatcacattccgcaacctggatcaagagataact
ctgtttctcatgctctggattttctctggactctttcttggctatccaat
cacagGTGCGGCGGAGCTTGTGTATGGAGGCACAATTGGGGCCTTGGGGA
AGTAGACGCAGACACGAGCTTGAACCACGGAGGGGTTCGCATGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGCTTTCCCTTTCCGTTGTTGATAC
ACAAACATGTTGTCTCCCTCTTTCTTCGCATGTCCCCTGATTGACATTTT
TGACGCGGACGTGCATGACGAGCGCGGATGCGAACGGAGGAAGGGAGGGG
GAGAGGAAGAGACGGAAGGAAAGAGGACAGAGGACGAGGAGAATGTGACA
GTGATGGAAGAAAAAAGGAGAGGAGAGGCAAAGGAGGAAAGAAATATAAC
AAGAAAGAAAAAGAAAGGGATAAGAGGCCGTCAAGATCGGAATCCACAAG
CAGGGCGACGAAGTGCTTATGGCCTAGCGAGGTATAGGTCTTAGTAGGAG
TGCACATCTCCCTCCTGCCCTTCTCTTTCTCTGACGGAGAAAGGGAAGAT
CAACAGGGAAAAGAGTGTGAGTATTCACGTCTTGTTTTGCATCCCCTCCC
GGGTGAAGGGGGGCGGAAGAACACCCTCGTTTCTTGATTGTTGATTTCTT
TCTTTGCGGCCAGCATGCGGGAGGTTCCGGACGTCGATGAATGCTTTACT
CCTGGTTTAGGGCTCTCCTTTCAAATCCCCCCCTCCTGTGTCTGTCGTCG
ATGCGTTTAATTTTCAAGTATATTTCAGTTAATCTTAATGGTGTCGTGTT
CACGGTCAGTTGTGAGTGTGTTGCCGACTCTTTCTGGCGCGTGGGGCGTT
ATGTTGTGTGTGTGTGTGTTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTT
CTTTGGGAAATCTGTTTTTGGTGTAGACAAGAGAAGTCTTGCCTTACTCT
TTGTTCCCCCTTGGCCGCTGCAGAGGTCGTCGCCGTCCACGTTTGATGTG
ACGTCCTTTTCTTTTCCTTTTCTCCCGTCTCGAATGCGGGAGTGGCCGAA
GGTCAACAAGTCGCGAGATTCTTGTCTCACACACGCGGGGGGGGGGGGGC
TTGTGAGAGTGTGCCAGGCAGTTCGTATTTGTTCACGTGCCCTCGCTGTG
TGCCCCCTCTCTCCTTTTTTCAGGTGTCTTCGTCGGTTTGATAAGAAGCC
TGCCCCAAGCTCTTTCTTCTTCTTCATTTTACGTGATTTGCCTTTTTCGT
AGTTGTCCCTATGCCATGTACATCACCTTCCTCCCTCCCTCCCTCC
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protein sequence of NO06G04090.1

>NO06G04090.1-protein ID=NO06G04090.1-protein|Name=NO06G04090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MQGIHGSMTTTTIMKSRMLLLLGSLCLFAPLAQAFLAPSIYMAAAVTRRA
TAMAAGSSLRMQQAAATTGIDVPKISFSKYHGIGNDFILIDNRQSDKPIL
SAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNG
IRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPI
LDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLD
PVDLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACG
TGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELV
YGGTIGALGK*
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Synonyms
Publications