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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1142087..1146582 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04090.1 vs.
Match: OAE23994.1 (hypothetical protein AXG93_1330s1030 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 368.6 bits (945), Expect = 2.200e-98 Identity = 183/309 (59.22%), Postives = 229/309 (74.11%), Query Frame = 0
Query: 49 RATAMAAGSSLRMQQAAATTGIDVPKISFSKYHGIGNDFILIDNRQSDKPILSAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNGIRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPILDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLDPV---DLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACGTGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELVYGGT 355
RA AM+ G ++ A+ + + F KYHG+GNDFIL+DNR+S P +S E ++C R++ +GADGVIF LPG G+DY+MRIYNSDGSEPEMCGNGIRCMAKF+ +LEG ESRSY+I TLAG++VP + DG + VDMGTPIL+ K+PTTL DG VV+APL VAG++W VT VSMGNPH V + + V LA++GP E + VFP KTN EFVQV++P LRM+VWERGAGPTLACGTGACAL VAA+L G+ + R+ V+LPGG LQIEWR+SD+HVYMTG AE+ + GT
Sbjct: 64 RAQAMSVGVETKI---ASKADVGESSLQFVKYHGLGNDFILVDNRKSSTPCISPEAAAKLCDRNFGVGADGVIFVLPGINGSDYTMRIYNSDGSEPEMCGNGIRCMAKFVAELEGIT---ESRSYKIDTLAGLIVPKLMDDGQICVDMGTPILEAKKIPTTLEPTQDGAVVKAPLVVAGRSWNVTCVSMGNPHCVALLDANEDVYSLPLAEIGPLFEKNEVFPAKTNTEFVQVLSPSHLRMRVWERGAGPTLACGTGACALVVAAVLEGRAE-RDCLVELPGGPLQIEWRESDNHVYMTGPAEIAFRGT 365
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04090.1 ID=NO06G04090.1|Name=NO06G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2378bp AACGACAGGGCGGCGGGCCAGGCAGACAGGTGCGCGCGCGGGGTGACCGG GACGCAACAAGGCCCAAGGACCAACACGACTCCCACATCCTCCCCTTCCT TTCCATGCAAGGAATACACGGTTCCATGACGACTACCACGATAATGAAGT CCCGCATGCTCCTACTCCTGGGTAGCCTTTGCTTGTTTGCCCCGCTGGCT CAAGCATTCCTTGCCCCCTCTATCTACATGGCCGCGGCGGTGACCAGACG GGCGACGGCGATGGCAGCAGGGTCGTCGTTGAGGATGCAGCAGGCGGCCG CGACGACGGGCATTGACGTGCCTAAAATCTCATTCTCCAAGTACCACGGC ATTGGGAATGACTTCATCCTGATCGACAACCGCCAGAGCGACAAGCCCAT CCTCAGCGCCGAGCAGTGCAAGGAGATCTGCTCGCGCCATTATTCAATCG GTGCGGACGGCGTCATCTTCGCTCTACCCGGCAAGGAGGGTGCTGACTAC TCCATGCGCATTTATAACTCTGACGGTTCGGAGCCGGAGATGTGCGGGAA TGGCATCCGGTGCATGGCCAAGTTTCTTCGACAGCTGGAAGGCGACGACA GGAACGGCGAGTCCCGGTCGTACCGCATCTATACGCTGGCCGGTATGGTT GTGCCCGTGGTGCGAGGAGATGGGCTCGTCACCGTCGACATGGGCACCCC CATCTTGGACGGCGCTAAGGTACCCACCACGTTGCCGGCCGGTCCAGACG GTCGCGTTGTTGAGGCGCCTTTGGAGGTGGCGGGGAAGACTTGGGGGGTC ACCACCGTGTCGATGGGCAACCCTCATGCCGTCATTTTCGTGCCCTTCCT CGATCCTGTGGACCTGGCCAAGGTGGGTCCACAAATTGAGGTGCATCCTG TCTTCCCCAAGAAGACCAACGTGGAGTTCGTGCAGGTGGTGGCACCCCAT CTCCTTCGCATGAAGGTGTGGGAACGCGGTGCTGGGCCCACTTTGGCGTG TGGTACCGGGGCATGTGCGTTGACGGTGGCGGCCATTTTGGCGGGAAAGA CGGATAAGAGAGAGGTGACTGTGCAGCTACCCGGCGGGGACCTTCAGATT GAGTGGCGAAAGAGCGACGATCACGTTTATATGACCGGTGCGGCGGAGCT TGTGTATGGAGGCACAATTGGGGCCTTGGGGAAGTAGACGCAGACACGAG CTTGAACCACGGAGGGGTTCGCATGGGAGGGAGGGAGGGAGGGAGGGAGG GAGGGAGGGCTTTCCCTTTCCGTTGTTGATACACAAACATGTTGTCTCCC TCTTTCTTCGCATGTCCCCTGATTGACATTTTTGACGCGGACGTGCATGA CGAGCGCGGATGCGAACGGAGGAAGGGAGGGGGAGAGGAAGAGACGGAAG GAAAGAGGACAGAGGACGAGGAGAATGTGACAGTGATGGAAGAAAAAAGG AGAGGAGAGGCAAAGGAGGAAAGAAATATAACAAGAAAGAAAAAGAAAGG GATAAGAGGCCGTCAAGATCGGAATCCACAAGCAGGGCGACGAAGTGCTT ATGGCCTAGCGAGGTATAGGTCTTAGTAGGAGTGCACATCTCCCTCCTGC CCTTCTCTTTCTCTGACGGAGAAAGGGAAGATCAACAGGGAAAAGAGTGT GAGTATTCACGTCTTGTTTTGCATCCCCTCCCGGGTGAAGGGGGGCGGAA GAACACCCTCGTTTCTTGATTGTTGATTTCTTTCTTTGCGGCCAGCATGC GGGAGGTTCCGGACGTCGATGAATGCTTTACTCCTGGTTTAGGGCTCTCC TTTCAAATCCCCCCCTCCTGTGTCTGTCGTCGATGCGTTTAATTTTCAAG TATATTTCAGTTAATCTTAATGGTGTCGTGTTCACGGTCAGTTGTGAGTG TGTTGCCGACTCTTTCTGGCGCGTGGGGCGTTATGTTGTGTGTGTGTGTG TTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTCTTTGGGAAATCTGTTTT TGGTGTAGACAAGAGAAGTCTTGCCTTACTCTTTGTTCCCCCTTGGCCGC TGCAGAGGTCGTCGCCGTCCACGTTTGATGTGACGTCCTTTTCTTTTCCT TTTCTCCCGTCTCGAATGCGGGAGTGGCCGAAGGTCAACAAGTCGCGAGA TTCTTGTCTCACACACGCGGGGGGGGGGGGGCTTGTGAGAGTGTGCCAGG CAGTTCGTATTTGTTCACGTGCCCTCGCTGTGTGCCCCCTCTCTCCTTTT TTCAGGTGTCTTCGTCGGTTTGATAAGAAGCCTGCCCCAAGCTCTTTCTT CTTCTTCATTTTACGTGATTTGCCTTTTTCGTAGTTGTCCCTATGCCATG TACATCACCTTCCTCCCTCCCTCCCTCC back to topprotein sequence of NO06G04090.1 >NO06G04090.1-protein ID=NO06G04090.1-protein|Name=NO06G04090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp MQGIHGSMTTTTIMKSRMLLLLGSLCLFAPLAQAFLAPSIYMAAAVTRRA TAMAAGSSLRMQQAAATTGIDVPKISFSKYHGIGNDFILIDNRQSDKPIL SAEQCKEICSRHYSIGADGVIFALPGKEGADYSMRIYNSDGSEPEMCGNG IRCMAKFLRQLEGDDRNGESRSYRIYTLAGMVVPVVRGDGLVTVDMGTPI LDGAKVPTTLPAGPDGRVVEAPLEVAGKTWGVTTVSMGNPHAVIFVPFLD PVDLAKVGPQIEVHPVFPKKTNVEFVQVVAPHLLRMKVWERGAGPTLACG TGACALTVAAILAGKTDKREVTVQLPGGDLQIEWRKSDDHVYMTGAAELV YGGTIGALGK* back to topmRNA from alignment at chr6:1142087..1146582+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04090.1 ID=NO06G04090.1|Name=NO06G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=4496bp|location=Sequence derived from alignment at chr6:1142087..1146582+ (Nannochloropsis oceanica) AACGACAGGGCGGCGGGCCAGGCAGACAGGTGCGCGCGCGGGGTGACCGG
GACGCAACAAGGCCCAAGGACCAACACGACTCCCACATCCTCCCCTTCCT
TTCCATGCAAGGAATACACGGTTCCATGACGACTACCACGATAATGAAGT
CCCGCATGCTCCTACTCCTGGGTAGCCTTTGCTTGTTTGCCCCGCTGGCT
CAAGCATTCCTTGCCCCCTCTATCTACATGGCCGCGGCGGTGACCAGACG
GGCGACGGCGATGGCAGCAGGGTCGTCGTTGAGGATGCAGCAGGCGGCCG
CGACGACGGGTACGAGGGGGATAAGACGGGGAGTTCGGGAAGAGGGGAAA
GGGGGACGACAGAAATGGCAGAAAAAGAGGGTATTATCTGTTATATTGCG
GCGAAAGGATGACTGCAGATTCGGATGGCGGCTTGAGTATTTGAACATGC
CACCACAACGCGACATCGCACTCCAGTGCCTTCCCTCACTCCCTTCCTTG
CTCTTTCCTCCTATGGTTTCATTTCCTCTAGGCATTGACGTGCCTAAAAT
CTCATTCTCCAAGTACCACGGCATTGGGAATGACTTCATCCTGATCGACA
ACCGCCAGAGCGACAAGCCCATCCTCAGCGCCGAGCAGTGCAAGGAGGTA
GACAGGAAGGGAGGGAGAGAGGAAGGGAAGGAGGGAAATTAAGGGGTGTC
TGAAGGACTCTAAATGAACCCCAGACTTCTCTTTCGGCAATCGCATGCTC
CTCTGACGACCATCATTTTATTCATCTATCACTCCCTTCCTCCCTCCCTC
CCTCCCTCCCTCCACCCCTTCCGCCGGCTCGCCAACTTTCAGATCTGCTC
GCGCCATTATTCAATCGGTGCGGACGGCGTCATCTTCGCTCTACCCGGCA
AGGAGGGTGCTGACTACTCCATGCGCATTTATAACTCTGACGGTACGTGG
TCGAGGGAGTGAGGGAGGGAGTGAGGGAGGGAGTGAGGGAGGGAAGGTGG
GAGGACAGGAAATTGAAAAGGAGGGAGGAGAACCTTTGCTCTTTGTGGGC
CGCTTTTCAAAGCTCTCTTGGGCCTCCCTCCCTCCCTCCCTCCCTCGTGT
CCAGGTTCGGAGCCGGAGATGTGCGGGAATGGCATCCGGTGCATGGCCAA
GTTTCTTCGACAGCTGGAAGGTAGGTAGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGAAAGTGGTGAATGTTTTTGGATGATACCTTCAGGCT
TAAAGAAAGAGGGGGGGGAGAAAACGCTGTGGAGGGAAATGACACCGACG
GAAAAGACGTGCTTTTGTGTCGATGAGAGGAAACTGCACTCACCTCCTCC
CTTTCTCCCTCCCTCCCTCCCTCCTGCCTTCCTCCCCTCCCCTCCCTCAA
GGCGACGACAGGAACGGCGAGTCCCGGTCGTACCGCATCTATACGCTGGC
CGGTATGGTTGTGCCCGTGGTGCGAGGAGATGGGCTCGTCACCGTCGACA
TGGGCACCCCCATCTTGGACGGTGAGGAGGGAGGGAGGGAGGGAGTAGGA
AGGAGGTCGAATCGACGGAGGGAAGCGGGTTGCACTGCGGTTGGCTGTGT
GCAGGAGCATTCATTTCTAGTTTTTCTCTTCCTTCCTCTCTTTTCCCTTT
TCTTTTTTCTCTTCCTGAGGTGATGCGTGTCAATTTTTTGTCCTTCATCC
CTCCCATATTTCCAATAATATTGTTTTAATCATATTTATTATATTACTAT
AATTATATATATTATTATTATTTATATTATACATATAATTATTATTAATA
TATTAATATTATGATTACTTAGTCTTTATCCCCCCCGTATCCCGATTCCC
TTGAATTCCTAATCGCACTTTGATTAGGCGCTAAGGTACCCACCACGTTG
CCGGCCGGTCCAGACGGTCGCGTTGTTGAGGCGCCTTTGGAGGTGGCGGG
GAAGACTTGGGGGGTAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGACGAGGAGGCAGGGGCAGGAGTCTC
GTCGGCCGGTTATTCCTTCTCGGACCCCGGCCTCGTATCTTGTACAGCCC
CCGGTGCTTGCCTTGCCCTCATCCTTCGCGCAATATCTCAACCTCCCTCC
CATCCTCCCTCCCTCCCTCCCTCCCTCCCCAGGTCACCACCGTGTCGATG
GGCAACCCTCATGCCGTCATTTTCGTGCCCTTCCTCGATCCTGTGGACCT
GGCCAAGGTGGGTCCACAAATTGAGGTGCATCCTGTCTTCCCCAAGAAGA
CCAACGTGGAGTTCGTGCAGGTGGGAAGGGAGGGAGGGAGGCAGGGGAGG
GGGGAAGGAGGGCGACGGACGGACAGAGCTTGCCATTTGTTTTCGGGAGC
TTTGAAAGAGACGCTATTTGTCTCAACATACCTCTTAAACACCCTCCCTC
CCTCCCTCCGTCCCTCCCTCCCTCCCCATCCCTCCCTTCCTTCTTCCCTC
CACTAGGTGGTGGCACCCCATCTCCTTCGCATGAAGGTGTGGGAACGCGG
TGCTGGGCCCACTTTGGCGTGTGGTACCGGGGCATGTGCGTTGACGGTGG
CGGCCATTTTGGCGGGAAAGACGGATAAGAGGTAAGCAGCCAGATAGAGG
GGCGGGGGGAAAGGAAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGG
GAAGGAGGGAGGGAGGGAGGGAAAGATGAAGGCTCTGGGCTTGACGCTGG
ACATGGCGGTATAGGCGTCTTGGACTTTCCATCCATTCATCTATTTCCCT
TCCTTTCCCCCCTTTCCCCCCTTCCCTATCCCCCTCCCTCCCTCCCTCAG
AGAGGTGACTGTGCAGCTACCCGGCGGGGACCTTCAGATTGAGTGGCGAA
AGAGCGACGATCACGTTTATATGACCGGTAAGGCGAGAAGAGAGGGAGGG
AGGGAAGGAGAGAGGGAAGCTGTGGCTGTGGACGCTGCAGGAGAGAGCAC
AACACCAAAGAGCAGGAAGGGAGAAACGTGTGCCAAGTGACGAGCAATCC
TCAGCATGATTCAGTGGTGTATAATGTGATATTCGACAGTATCAAAATCT
AATTTATTTCCTATTTGATCATCAGCGATGTCGAGGAATAATAATTCGTG
AATGGGAAGACCCAGTAATCACATTCCGCAACCTGGATCAAGAGATAACT
CTGTTTCTCATGCTCTGGATTTTCTCTGGACTCTTTCTTGGCTATCCAAT
CACAGGTGCGGCGGAGCTTGTGTATGGAGGCACAATTGGGGCCTTGGGGA
AGTAGACGCAGACACGAGCTTGAACCACGGAGGGGTTCGCATGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGCTTTCCCTTTCCGTTGTTGATAC
ACAAACATGTTGTCTCCCTCTTTCTTCGCATGTCCCCTGATTGACATTTT
TGACGCGGACGTGCATGACGAGCGCGGATGCGAACGGAGGAAGGGAGGGG
GAGAGGAAGAGACGGAAGGAAAGAGGACAGAGGACGAGGAGAATGTGACA
GTGATGGAAGAAAAAAGGAGAGGAGAGGCAAAGGAGGAAAGAAATATAAC
AAGAAAGAAAAAGAAAGGGATAAGAGGCCGTCAAGATCGGAATCCACAAG
CAGGGCGACGAAGTGCTTATGGCCTAGCGAGGTATAGGTCTTAGTAGGAG
TGCACATCTCCCTCCTGCCCTTCTCTTTCTCTGACGGAGAAAGGGAAGAT
CAACAGGGAAAAGAGTGTGAGTATTCACGTCTTGTTTTGCATCCCCTCCC
GGGTGAAGGGGGGCGGAAGAACACCCTCGTTTCTTGATTGTTGATTTCTT
TCTTTGCGGCCAGCATGCGGGAGGTTCCGGACGTCGATGAATGCTTTACT
CCTGGTTTAGGGCTCTCCTTTCAAATCCCCCCCTCCTGTGTCTGTCGTCG
ATGCGTTTAATTTTCAAGTATATTTCAGTTAATCTTAATGGTGTCGTGTT
CACGGTCAGTTGTGAGTGTGTTGCCGACTCTTTCTGGCGCGTGGGGCGTT
ATGTTGTGTGTGTGTGTGTTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTT
CTTTGGGAAATCTGTTTTTGGTGTAGACAAGAGAAGTCTTGCCTTACTCT
TTGTTCCCCCTTGGCCGCTGCAGAGGTCGTCGCCGTCCACGTTTGATGTG
ACGTCCTTTTCTTTTCCTTTTCTCCCGTCTCGAATGCGGGAGTGGCCGAA
GGTCAACAAGTCGCGAGATTCTTGTCTCACACACGCGGGGGGGGGGGGGC
TTGTGAGAGTGTGCCAGGCAGTTCGTATTTGTTCACGTGCCCTCGCTGTG
TGCCCCCTCTCTCCTTTTTTCAGGTGTCTTCGTCGGTTTGATAAGAAGCC
TGCCCCAAGCTCTTTCTTCTTCTTCATTTTACGTGATTTGCCTTTTTCGT
AGTTGTCCCTATGCCATGTACATCACCTTCCTCCCTCCCTCCCTCC back to topCoding sequence (CDS) from alignment at chr6:1142087..1146582+ >NO06G04090.1 ID=NO06G04090.1|Name=NO06G04090.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr6:1142087..1146582+ (Nannochloropsis oceanica) ATGCAAGGAATACACGGTTCCATGACGACTACCACGATAATGAAGTCCCG CATGCTCCTACTCCTGGGTAGCCTTTGCTTGTTTGCCCCGCTGGCTCAAG CATTCCTTGCCCCCTCTATCTACATGGCCGCGGCGGTGACCAGACGGGCG ACGGCGATGGCAGCAGGGTCGTCGTTGAGGATGCAGCAGGCGGCCGCGAC GACGGGCATTGACGTGCCTAAAATCTCATTCTCCAAGTACCACGGCATTG GGAATGACTTCATCCTGATCGACAACCGCCAGAGCGACAAGCCCATCCTC AGCGCCGAGCAGTGCAAGGAGATCTGCTCGCGCCATTATTCAATCGGTGC GGACGGCGTCATCTTCGCTCTACCCGGCAAGGAGGGTGCTGACTACTCCA TGCGCATTTATAACTCTGACGGTTCGGAGCCGGAGATGTGCGGGAATGGC ATCCGGTGCATGGCCAAGTTTCTTCGACAGCTGGAAGGCGACGACAGGAA CGGCGAGTCCCGGTCGTACCGCATCTATACGCTGGCCGGTATGGTTGTGC CCGTGGTGCGAGGAGATGGGCTCGTCACCGTCGACATGGGCACCCCCATC TTGGACGGCGCTAAGGTACCCACCACGTTGCCGGCCGGTCCAGACGGTCG CGTTGTTGAGGCGCCTTTGGAGGTGGCGGGGAAGACTTGGGGGGTCACCA CCGTGTCGATGGGCAACCCTCATGCCGTCATTTTCGTGCCCTTCCTCGAT CCTGTGGACCTGGCCAAGGTGGGTCCACAAATTGAGGTGCATCCTGTCTT CCCCAAGAAGACCAACGTGGAGTTCGTGCAGGTGGTGGCACCCCATCTCC TTCGCATGAAGGTGTGGGAACGCGGTGCTGGGCCCACTTTGGCGTGTGGT ACCGGGGCATGTGCGTTGACGGTGGCGGCCATTTTGGCGGGAAAGACGGA TAAGAGAGAGGTGACTGTGCAGCTACCCGGCGGGGACCTTCAGATTGAGT GGCGAAAGAGCGACGATCACGTTTATATGACCGGTGCGGCGGAGCTTGTG TATGGAGGCACAATTGGGGCCTTGGGGAAGTAG back to top
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