NO06G04020, NO06G04020 (gene) Nannochloropsis oceanica

Overview
NameNO06G04020
Unique NameNO06G04020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3247
Alignment locationchr6:1122613..1125859 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1122613..1125859 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G04020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000070NSK000070Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04020.1NO06G04020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|126058gene_6734Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04020.1NO06G04020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04020 ID=NO06G04020|Name=NO06G04020|organism=Nannochloropsis oceanica|type=gene|length=3247bp
TCGACACAATTCTTTTTTCCATCACGCACTTCCCTTTTTCTTCTTTTCCC
AAGTATTATTTCTTTCATTTTGTTCTTTGCTTTAGTTGATTACAATTTAG
GGCCCATCCAGGATTAAGGGATCGAAGACGTGTACAATAGTGTCAGCAGC
GACTGAACGAGCTCGAGGCATCGCCATCGTGTGGGCTCTACCTTACTCCT
CATCCCCTCCCTCGCCAGTCCCCTATTACCTCCATTACCAAGTCGTTCAA
CGCCCCCGCAACAGGGTCACGGACCACCAGCAGCACGGTGCCTTTCGCGC
CATCCAACACCAAGAAAAGCGGACGCATCGACAAGCGAGGAATGCCATGG
GCATCCATCCATTGATGAGAAGGGTCGCTGAGGAGGGAGGGAGAGGAGGA
GGGAGAGGAGGAGGAGGAGGGGGAGGAGAAGGGTGGCAACCCGCTTTTTT
TGGCCAGGCGCTGCGCGTCCTGAGGAGGTAGAATTGTCACACCCACGACG
GCGGCGAGAGAGGGAGGGATGATCCGCATGCGTTTAAGTCCTTCTGTGAG
CGTGAGTGCGGATTGGCTGGGGTCGACCAGGACGATGACGTACTTGCTGG
TGCCCTGTGCGGCGGTGTAAGGAAGGAGGGATGCAGGGAAAGACAAATTG
AGGAAGGgtaagatgcgggcggaggagacatgaagagtatctattcaaag
atgtatgtatgatctacattcgtgtgctacaatataccatcaccattcaa
agcgcgctagcatctcatgacctccttctcgacactctacccccctccct
ccctgcatccctcccttgccactccatatatctcacccgcacactgttgt
acgtgacttgcacttgtccttctctagCATTTTCAGACCGCTGGAGGCAT
CGCCAAGCCGAAAGAGGCGCGTAATCGTGCCGCTTCAAAGCCTTGCCTAT
CAACACCTCCGGCTGCTGTTGCTCTTGCTGCTGCTGTTGTTGATGCTGCT
GCTCCCCTCCTGGCACTGATGACGAAGGCGAAGAAGAAGAATAAGGAAGT
GGAGAGGACAACGGCACAACCACACCCGCTGCCGCCGCTGCCGCTACCGC
TGCTGGGAAATTTCCTCCTCCCATCCTTTGCGCTTGAGCTTTCGCAGCTT
CCTCCTCCTTGGCGTAGACATTCACCACACTCCCCCCCGAGCCACGCTCC
GCCTTGAATTCCAACATGGCACTCAATTCCTCCATCGCAGCTGCCTCCCC
TCCTTCTCTACCCTTGCTTCCTTCCGCGGCGTTCCGCCAATCCGGGTTGG
GTTTTTTGGGATTATACCACTCAGTTTCCATTATGTCCTCGCGTCTCGAG
GCCCGCAAGCGACGAATGTGCTGAATGCGTTGCGATAACAACACTTGGCT
TTGCTTTTCCCGGAGCTCTTTTTCGGCAACGCCACGCTCGCGTTCCTCCC
CAGACGGCTTGGTGCGCATTTGGAGGACGCCGTGCTGGCGGCGGTCGCGG
GGAGGAGAGGAGGAAAGCGGCGAAGAATGAAGCGGCTTTAGGTGGGAAAG
GGAGGGGATGAAGGAAAAGGCACAGGGTGTGCTGGCCAAGAGAAGGTTGA
GGAGGACAAGCAGGGGAACGAGGCAGGGATGACGGACGTATCTTATAGTT
GCCGCCATTGCCAGCACCGGTGGCAAGCTGTGGTGTGATGTGCATGGGAG
CGCGTGAGGGGGAGCGGGAAGGGGTGGGTGCGAGCGGCGCCGGGAGGTTG
AACGAGGAATCGCAAATGCGCCTGAAAGCCACAGGCAAACTCGCACAGCT
CACAGCACACCTACCCTACGTATACGATATGGTCAAGCATCGTCATCGTG
CCTGCGTCAAGGCACCTCTCTTTCTCAATCGCTCACGGCGACCGTGACAG
ATCGATCCAATCACCCTCCCAAAAGGACTTCAATACCCCCACCCTCCACA
AATATTGACAGGCATGGCTCCCAGCGCGTCACGACCAAGACAACCGGCTC
TGGTGTCACTCTCAGTCATGTTCCTGGCCCTCTCCTCCGGCCCCATAAGA
GTGAAGGCCTCCCGCAAGCCCAGCAGCGGCAGTAAAGAGGACAGAAAAAA
AGCACGAGCCGCGCCCACCCCCCAACAGAAGGAGCAGGCACCACCACCAT
CAGCGGAAAAAATCAAATTCAAGCTCGCAGACTTTCTTGATCCATACGGG
GAATGGGGAGAAGACGAGAAAGGAAGGGAGGGCGGTGGTCAGTATGGTCC
GGGGACCGCGGAAGGGACGTTCGTGATGATGGAGAGTGGGAAGATGATGG
AGGACTGGGAGGAGCTGATGCGGATGGAGCCCCCCAAGCCGTTGCGAGAG
TACATGGACTGCTTGGCCCTTTCTCCGTTTGGCTTGCCACCACCTTCCAC
CGCTGACTATTTGGAAAGAGAAGAAGAAAAAGAAGAAGAACGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGTGAGCCTGTCTACCTTGTGGTGGACGATGCCCCCAC
TGGCCGTGTTACACTCGACGTGGATTGCCTTCTTCATGCTATCCCTGAGC
TCCCTGCCCCCGCTTCCTCCTCCTTCTCTTCCTTCCCTTCCTTCTCTGCC
TCCCAACCCTTCCCTCGCACGGCCACTGAGCGTTTCCCCTTCCTCCTCGA
CCCCAGCCTATACACCTGTACTCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCTTCCTTCTCCTCCGCCTCCAGCCCCACCACCATC
ACCTGCTTCGGGCGCGCCGCCCCCGTCCTCCTCGAAGCCGCCTTCACCCG
TTTGGATATTCACCGCTCCTCCTCCTCCTCGCGCTCCTCTGGCCCTTCCC
GATGGCAACACCACCAAGCCAGATATGACTGGGAGGTAGGAGGAGAAGAG
GATTACGACAGTGCGGTTCATACCTACAGCAATGCGCAGTTGGACATGCA
GGATGATTTTGCCGACCTCTGCGCCTTTTACCCGTCAATGAAGGATGCGG
AGACGTGCCTCGATCTTCTGAGTGGATGGGCCGAGTTTTCTCAAGACCAT
CCTCCTCCTCCTCCTCCTTCTTCCTCTTCTCTATCGCAGCAGCAACGGAT
GAAGGGTGGGGAAGGGAATAAGAAGAAGAAGGAGAAGGACAAGAAGAAGA
GGAGGGATCTAGATTGGATGGCAGAGGAGGGGGGGAGGAGGAGGTAA
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protein sequence of NO06G04020.1

>NO06G04020.1-protein ID=NO06G04020.1-protein|Name=NO06G04020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MAPSASRPRQPALVSLSVMFLALSSGPIRVKASRKPSSGSKEDRKKARAA
PTPQQKEQAPPPSAEKIKFKLADFLDPYGEWGEDEKGREGGGQYGPGTAE
GTFVMMESGKMMEDWEELMRMEPPKPLREYMDCLALSPFGLPPPSTADYL
EREEEKEEERGGGGGGGGGGGGGGGGGGGGGGGGEPVYLVVDDAPTGRVT
LDVDCLLHAIPELPAPASSSFSSFPSFSASQPFPRTATERFPFLLDPSLY
TCTPSSSSSSSSSSSSSSSFSSASSPTTITCFGRAAPVLLEAAFTRLDIH
RSSSSSRSSGPSRWQHHQARYDWEVGGEEDYDSAVHTYSNAQLDMQDDFA
DLCAFYPSMKDAETCLDLLSGWAEFSQDHPPPPPPSSSSLSQQQRMKGGE
GNKKKKEKDKKKRRDLDWMAEEGGRRR*
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Synonyms
Publications