NO06G04010, NO06G04010 (gene) Nannochloropsis oceanica

Overview
NameNO06G04010
Unique NameNO06G04010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2470
Alignment locationchr6:1122613..1125082 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1122613..1125082 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G04010 vs. NCBI_GenBank
Match: EWM26398.1 (hypothetical protein Naga_100365g2 [Nannochloropsis gaditana])

HSP 1 Score: 318.9 bits (816), Expect = 2.200e-83
Identity = 194/391 (49.62%), Postives = 233/391 (59.59%), Query Frame = 0 
Query:   22 LLLASTPCAFSFIPSLS---HLKPLHSSPLSSSPPRDRRQH-GVLQMRTKPSGEERERGVAEKELREKQSQVLLSQRIQHIRRLRASRREDIMETEWYNPKKPNPDWRNAAEGSKGR-EGGEAAAMEELSAMLEFKAERGSGGSVVNVYAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLIGKALKRHDYAPLSAWRCLQRSENAREGQVQVTYNSVRGTSKYVIVLVDPSQSALTLTEGLKRMRIIPPSLAAVVGVTILPPQDAQRLAKKSGLPPFSSPXXXXXXXXXXXXXXXXSHQWMDAHGIPRLSMRPLFLVLDGAKGTVLLVVRDPVAGALNDLVMEVIGDWRGR 408
            L LA++  A++++PS S                 PR +R+H   LQMR KPSGEERERG+AEK+LREK SQVLLSQRIQHIRRLRASRRED+M TEWY P KPNPDWR AAEG + R EG EAAAM+EL+AML++ AERG+GGSVVNVYAK                                                                    ++G+ALKRHDYAPL+ WRCL+R     EG+   TYN +RGT KYV++LVDP+ +A TL EGL RMRIIP SLAAVVGVT L   +  RLAKK+GL    +                 S+ WMDA+G+PRLS+RP  L+LDG+ G VL V RDP  G LND VMEV+GDWRG+
Sbjct:   41 LALAASRAAYAYLPSHSXXXXXXXXXXXXXXXXXPRIKRRHPAALQMRMKPSGEERERGLAEKDLREKHSQVLLSQRIQHIRRLRASRREDVMATEWYCPTKPNPDWRYAAEGERPRGEGREAAAMDELTAMLDYHAERGAGGSVVNVYAK----------------------EEEAAEAFAQKLGGSLAAFDRVTQASGVPGGVPPPVPLSSVASTPAVVGRALKRHDYAPLAVWRCLRRWAGNAEGE-PCTYNGIRGTGKYVVILVDPNLAATTLVEGLNRMRIIPSSLAAVVGVTPLSCPELARLAKKAGLTATGA-------STSTYLLSDTSYSWMDAYGLPRLSLRPWLLILDGSTGMVLSVKRDPTPGTLNDAVMEVVGDWRGK 401
The following BLAST results are available for this feature:
BLAST of NO06G04010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26398.12.200e-8349.62hypothetical protein Naga_100365g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04010.1NO06G04010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597872gene_6733Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100365g2gene4131Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04010.1NO06G04010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04010 ID=NO06G04010|Name=NO06G04010|organism=Nannochloropsis oceanica|type=gene|length=2470bp
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTTCTTCTTCTTTTTCTTCTT
CTCTTTCCAAATAGTCAGCGGTGGAAGGTGGTGGCAAGCCAAACGGAGAA
AGGGCCAAGCAGTCCATGTACTCTCGCAACGGCTTGGGGGGCTCCATCCG
CATCAGCTCCTCCCAGTCCTCCATCATCTTCCCACTCTCCATCATCACGA
ACGTCCCTTCCGCGGTCCCCGGACCATACTGACCACCGCCCTCCCTTCCT
TTCTCGTCTTCTCCCCATTCCCCGTATGGATCAAGAAAGTCTGCGAGCTT
GAATTTGATTTTTTCCGCTGATGGTGGTGGTGCCTGCTCCTTCTGTTGGG
GGGTGGGCGCGGCTCGTGCTTTTTTTCTGTCCTCTTTACTGCCGCTGCTG
GGCTTGCGGGAGGCCTTCACTCTTATGGGGCCGGAGGAGAGGGCCAGGAA
CATGACTGAGAGTGACACCAGAGCCGGTTGTCTTGGTCGTGACGCGCTGG
GAGCCATGCCTGTCAATATTTGTGGAGGGTGGGGGTATTGAAGTCCTTTT
GGGAGGGTGATTGGATCGATCTGTCACGGTCGCCGTGAGCGATTGAGAAA
GAGAGGTGCCTTGACGCAGGCACGATGACGATGCTTGACCATATCGTATA
CGTAGGGTAGGTGTGCTGTGAGCTGTGCGAGTTTGCCTGTGGCTTTCAGG
CGCATTTGCGATTCCTCGTTCAACCTCCCGGCGCCGCTCGCACCCACCCC
TTCCCGCTCCCCCTCACGCGCTCCCATGCACATCACACCACAGCTTGCCA
CCGGTGCTGGCAATGGCGGCAACTATAAGATACGTCCGTCATCCCTGCCT
CGTTCCCCTGCTTGTCCTCCTCAACCTTCTCTTGGCCAGCACACCCTGTG
CCTTTTCCTTCATCCCCTCCCTTTCCCACCTAAAGCCGCTTCATTCTTCG
CCGCTTTCCTCCTCTCCTCCCCGCGACCGCCGCCAGCACGGCGTCCTCCA
AATGCGCACCAAGCCGTCTGGGGAGGAACGCGAGCGTGGCGTTGCCGAAA
AAGAGCTCCGGGAAAAGCAAAGCCAAGTGTTGTTATCGCAACGCATTCAG
CACATTCGTCGCTTGCGGGCCTCGAGACGCGAGGACATAATGGAAACTGA
GTGGTATAATCCCAAAAAACCCAACCCGGATTGGCGGAACGCCGCGGAAG
GAAGCAAGGGTAGAGAAGGAGGGGAGGCAGCTGCGATGGAGGAATTGAGT
GCCATGTTGGAATTCAAGGCGGAGCGTGGCTCGGGGGGGAGTGTGGTGAA
TGTCTACGCCAAGGAGGAGGAAGCTGCGAAAGCTCAAGCGCAAAGGATGG
GAGGAGGAAATTTCCCAGCAGCGGTAGCGGCAGCGGCGGCAGCGGGTGTG
GTTGTGCCGTTGTCCTCTCCACTTCCTTATTCTTCTTCTTCGCCTTCGTC
ATCAGTGCCAGGAGGGGAGCAGCAGCATCAACAACAGCAGCAGCAAGAGC
AACAGCAGCCGGAGGTGTTGATAGGCAAGGCTTTGAAGCGGCACGATTAC
GCGCCTCTTTCGGCTTGGCGATGCCTCCAGCGGTCTGAAAATGCTAGAGA
AGGACAAGTGCAAGTCACGTACAACAGTGTGCGGgtgagatatatggagt
ggcaagggagggatgcagggagggaggggggtagagtgtcgagaaggagg
tcatgagatgctagcgcgctttgaatggtgatggtatattgtagcacacg
aatgtagatcatacatacatctttgaatagatactcttcatgtctcctcc
gcccgcatcttacccttcctcaatttgtctttccctgcatccctccttcc
ttacaccgccgcacagGGCACCAGCAAGTACGTCATCGTCCTGGTCGACC
CCAGCCAATCCGCACTCACGCTCACAGAAGGACTTAAACGCATGCGGATC
ATCCCTCCCTCTCTCGCCGCCGTCGTGGGTGTGACAATTCTACCTCCTCA
GGACGCGCAGCGCCTGGCCAAAAAAAGCGGGTTGCCACCCTTCTCCTCCC
CCTCCTCCTCCTCCTCTCCCTCCTCCTCTCCCTCCCTCCTCAGCGACCCT
TCTCATCAATGGATGGATGCCCATGGCATTCCTCGCTTGTCGATGCGTCC
GCTTTTCTTGGTGTTGGATGGCGCGAAAGGCACCGTGCTGCTGGTGGTCC
GTGACCCTGTTGCGGGGGCGTTGAACGACTTGGTAATGGAGGTAATAGGG
GACTGGCGAGGGAGGGGATGAGGAGTAAGGTAGAGCCCACACGATGGCGA
TGCCTCGAGCTCGTTCAGTCGCTGCTGACACTATTGTACACGTCTTCGAT
CCCTTAATCCTGGATGGGCCCTAAATTGTAATCAACTAAAGCAAAGAACA
AAATGAAAGAAATAATACTTGGGAAAAGAAGAAAAAGGGAAGTGCGTGAT
GGAAAAAAGAATTGTGTCGA
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protein sequence of NO06G04010.1

>NO06G04010.1-protein ID=NO06G04010.1-protein|Name=NO06G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MAATIRYVRHPCLVPLLVLLNLLLASTPCAFSFIPSLSHLKPLHSSPLSS
SPPRDRRQHGVLQMRTKPSGEERERGVAEKELREKQSQVLLSQRIQHIRR
LRASRREDIMETEWYNPKKPNPDWRNAAEGSKGREGGEAAAMEELSAMLE
FKAERGSGGSVVNVYAKEEEAAKAQAQRMGGGNFPAAVAAAAAAGVVVPL
SSPLPYSSSSPSSSVPGGEQQHQQQQQQEQQQPEVLIGKALKRHDYAPLS
AWRCLQRSENAREGQVQVTYNSVRGTSKYVIVLVDPSQSALTLTEGLKRM
RIIPPSLAAVVGVTILPPQDAQRLAKKSGLPPFSSPSSSSSPSSSPSLLS
DPSHQWMDAHGIPRLSMRPLFLVLDGAKGTVLLVVRDPVAGALNDLVMEV
IGDWRGRG*
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Synonyms
Publications