NO06G04010.1, NO06G04010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04010.1
Unique NameNO06G04010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2238
Alignment locationchr6:1122613..1125082 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1122613..1125082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G04010.1 vs.
Match: EWM26398.1 (hypothetical protein Naga_100365g2 [Nannochloropsis gaditana])

HSP 1 Score: 371.3 bits (952), Expect = 3.800e-99
Identity = 224/391 (57.29%), Postives = 273/391 (69.82%), Query Frame = 0
Query:   22 LLLASTPCAFSFIPSLSHLKPLHSSPL----SSSPPRDRRQHGVLQMRTKPSGEERERGVAEKELREKQSQVLLSQRIQHIRRLRASRREDIMETEWYNPKKPNPDWRNAAEGSKGR-EGGEAAAMEELSAMLEFKAERGSGGSVVNVYAKEEEAAKAQAQRMGGGNFPAAVAAAAAAGVVVPLSSPLPYSSSSPSSSVPGGEQQHQQQQQQEQQQPEVLIGKALKRHDYAPLSAWRCLQRSENAREGQVQVTYNSVRGTSKYVIVLVDPSQSALTLTEGLKRMRIIPPSLAAVVGVTILPPQDAQRLAKKSGLPPFSSPSSSSSPSSSPSLLSDPSHQWMDAHGIPRLSMRPLFLVLDGAKGTVLLVVRDPVAGALNDLVMEVIGDWRGR 408
            L LA++  A++++PS S      SS L    SSSP   RR    LQMR KPSGEERERG+AEK+LREK SQVLLSQRIQHIRRLRASRRED+M TEWY P KPNPDWR AAEG + R EG EAAAM+EL+AML++ AERG+GGSVVNVYAKEEEAA+A AQ++ GG+  A      A+GV   +  P+P SS + + +V                     +G+ALKRHDYAPL+ WRCL+R     EG+   TYN +RGT KYV++LVDP+ +A TL EGL RMRIIP SLAAVVGVT L   +  RLAKK+GL       +++  S+S  LLSD S+ WMDA+G+PRLS+RP  L+LDG+ G VL V RDP  G LND VMEV+GDWRG+
Sbjct:   41 LALAASRAAYAYLPSHSFFFSSSSSSLVASFSSSPRIKRRHPAALQMRMKPSGEERERGLAEKDLREKHSQVLLSQRIQHIRRLRASRREDVMATEWYCPTKPNPDWRYAAEGERPRGEGREAAAMDELTAMLDYHAERGAGGSVVNVYAKEEEAAEAFAQKL-GGSLAAFDRVTQASGVPGGVPPPVPLSSVASTPAV---------------------VGRALKRHDYAPLAVWRCLRRWAGNAEGE-PCTYNGIRGTGKYVVILVDPNLAATTLVEGLNRMRIIPSSLAAVVGVTPLSCPELARLAKKAGL-------TATGASTSTYLLSDTSYSWMDAYGLPRLSLRPWLLILDGSTGMVLSVKRDPTPGTLNDAVMEVVGDWRGK 401          
The following BLAST results are available for this feature:
BLAST of NO06G04010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26398.13.800e-9957.29hypothetical protein Naga_100365g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04010NO06G04010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04010.1NO06G04010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04010.1.cds1NO06G04010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04010.1.cds2NO06G04010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04010.1 ID=NO06G04010.1|Name=NO06G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTTCTTCTTCTTTTTCTTCTT
CTCTTTCCAAATAGTCAGCGGTGGAAGGTGGTGGCAAGCCAAACGGAGAA
AGGGCCAAGCAGTCCATGTACTCTCGCAACGGCTTGGGGGGCTCCATCCG
CATCAGCTCCTCCCAGTCCTCCATCATCTTCCCACTCTCCATCATCACGA
ACGTCCCTTCCGCGGTCCCCGGACCATACTGACCACCGCCCTCCCTTCCT
TTCTCGTCTTCTCCCCATTCCCCGTATGGATCAAGAAAGTCTGCGAGCTT
GAATTTGATTTTTTCCGCTGATGGTGGTGGTGCCTGCTCCTTCTGTTGGG
GGGTGGGCGCGGCTCGTGCTTTTTTTCTGTCCTCTTTACTGCCGCTGCTG
GGCTTGCGGGAGGCCTTCACTCTTATGGGGCCGGAGGAGAGGGCCAGGAA
CATGACTGAGAGTGACACCAGAGCCGGTTGTCTTGGTCGTGACGCGCTGG
GAGCCATGCCTGTCAATATTTGTGGAGGGTGGGGGTATTGAAGTCCTTTT
GGGAGGGTGATTGGATCGATCTGTCACGGTCGCCGTGAGCGATTGAGAAA
GAGAGGTGCCTTGACGCAGGCACGATGACGATGCTTGACCATATCGTATA
CGTAGGGTAGGTGTGCTGTGAGCTGTGCGAGTTTGCCTGTGGCTTTCAGG
CGCATTTGCGATTCCTCGTTCAACCTCCCGGCGCCGCTCGCACCCACCCC
TTCCCGCTCCCCCTCACGCGCTCCCATGCACATCACACCACAGCTTGCCA
CCGGTGCTGGCAATGGCGGCAACTATAAGATACGTCCGTCATCCCTGCCT
CGTTCCCCTGCTTGTCCTCCTCAACCTTCTCTTGGCCAGCACACCCTGTG
CCTTTTCCTTCATCCCCTCCCTTTCCCACCTAAAGCCGCTTCATTCTTCG
CCGCTTTCCTCCTCTCCTCCCCGCGACCGCCGCCAGCACGGCGTCCTCCA
AATGCGCACCAAGCCGTCTGGGGAGGAACGCGAGCGTGGCGTTGCCGAAA
AAGAGCTCCGGGAAAAGCAAAGCCAAGTGTTGTTATCGCAACGCATTCAG
CACATTCGTCGCTTGCGGGCCTCGAGACGCGAGGACATAATGGAAACTGA
GTGGTATAATCCCAAAAAACCCAACCCGGATTGGCGGAACGCCGCGGAAG
GAAGCAAGGGTAGAGAAGGAGGGGAGGCAGCTGCGATGGAGGAATTGAGT
GCCATGTTGGAATTCAAGGCGGAGCGTGGCTCGGGGGGGAGTGTGGTGAA
TGTCTACGCCAAGGAGGAGGAAGCTGCGAAAGCTCAAGCGCAAAGGATGG
GAGGAGGAAATTTCCCAGCAGCGGTAGCGGCAGCGGCGGCAGCGGGTGTG
GTTGTGCCGTTGTCCTCTCCACTTCCTTATTCTTCTTCTTCGCCTTCGTC
ATCAGTGCCAGGAGGGGAGCAGCAGCATCAACAACAGCAGCAGCAAGAGC
AACAGCAGCCGGAGGTGTTGATAGGCAAGGCTTTGAAGCGGCACGATTAC
GCGCCTCTTTCGGCTTGGCGATGCCTCCAGCGGTCTGAAAATGCTAGAGA
AGGACAAGTGCAAGTCACGTACAACAGTGTGCGGGGCACCAGCAAGTACG
TCATCGTCCTGGTCGACCCCAGCCAATCCGCACTCACGCTCACAGAAGGA
CTTAAACGCATGCGGATCATCCCTCCCTCTCTCGCCGCCGTCGTGGGTGT
GACAATTCTACCTCCTCAGGACGCGCAGCGCCTGGCCAAAAAAAGCGGGT
TGCCACCCTTCTCCTCCCCCTCCTCCTCCTCCTCTCCCTCCTCCTCTCCC
TCCCTCCTCAGCGACCCTTCTCATCAATGGATGGATGCCCATGGCATTCC
TCGCTTGTCGATGCGTCCGCTTTTCTTGGTGTTGGATGGCGCGAAAGGCA
CCGTGCTGCTGGTGGTCCGTGACCCTGTTGCGGGGGCGTTGAACGACTTG
GTAATGGAGGTAATAGGGGACTGGCGAGGGAGGGGATGAGGAGTAAGGTA
GAGCCCACACGATGGCGATGCCTCGAGCTCGTTCAGTCGCTGCTGACACT
ATTGTACACGTCTTCGATCCCTTAATCCTGGATGGGCCCTAAATTGTAAT
CAACTAAAGCAAAGAACAAAATGAAAGAAATAATACTTGGGAAAAGAAGA
AAAAGGGAAGTGCGTGATGGAAAAAAGAATTGTGTCGA
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protein sequence of NO06G04010.1

>NO06G04010.1-protein ID=NO06G04010.1-protein|Name=NO06G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MAATIRYVRHPCLVPLLVLLNLLLASTPCAFSFIPSLSHLKPLHSSPLSS
SPPRDRRQHGVLQMRTKPSGEERERGVAEKELREKQSQVLLSQRIQHIRR
LRASRREDIMETEWYNPKKPNPDWRNAAEGSKGREGGEAAAMEELSAMLE
FKAERGSGGSVVNVYAKEEEAAKAQAQRMGGGNFPAAVAAAAAAGVVVPL
SSPLPYSSSSPSSSVPGGEQQHQQQQQQEQQQPEVLIGKALKRHDYAPLS
AWRCLQRSENAREGQVQVTYNSVRGTSKYVIVLVDPSQSALTLTEGLKRM
RIIPPSLAAVVGVTILPPQDAQRLAKKSGLPPFSSPSSSSSPSSSPSLLS
DPSHQWMDAHGIPRLSMRPLFLVLDGAKGTVLLVVRDPVAGALNDLVMEV
IGDWRGRG*
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mRNA from alignment at chr6:1122613..1125082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04010.1 ID=NO06G04010.1|Name=NO06G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2470bp|location=Sequence derived from alignment at chr6:1122613..1125082- (Nannochloropsis oceanica)
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTTCTTCTTCTTTTTCTTCTT CTCTTTCCAAATAGTCAGCGGTGGAAGGTGGTGGCAAGCCAAACGGAGAA AGGGCCAAGCAGTCCATGTACTCTCGCAACGGCTTGGGGGGCTCCATCCG CATCAGCTCCTCCCAGTCCTCCATCATCTTCCCACTCTCCATCATCACGA ACGTCCCTTCCGCGGTCCCCGGACCATACTGACCACCGCCCTCCCTTCCT TTCTCGTCTTCTCCCCATTCCCCGTATGGATCAAGAAAGTCTGCGAGCTT GAATTTGATTTTTTCCGCTGATGGTGGTGGTGCCTGCTCCTTCTGTTGGG GGGTGGGCGCGGCTCGTGCTTTTTTTCTGTCCTCTTTACTGCCGCTGCTG GGCTTGCGGGAGGCCTTCACTCTTATGGGGCCGGAGGAGAGGGCCAGGAA CATGACTGAGAGTGACACCAGAGCCGGTTGTCTTGGTCGTGACGCGCTGG GAGCCATGCCTGTCAATATTTGTGGAGGGTGGGGGTATTGAAGTCCTTTT GGGAGGGTGATTGGATCGATCTGTCACGGTCGCCGTGAGCGATTGAGAAA GAGAGGTGCCTTGACGCAGGCACGATGACGATGCTTGACCATATCGTATA CGTAGGGTAGGTGTGCTGTGAGCTGTGCGAGTTTGCCTGTGGCTTTCAGG CGCATTTGCGATTCCTCGTTCAACCTCCCGGCGCCGCTCGCACCCACCCC TTCCCGCTCCCCCTCACGCGCTCCCATGCACATCACACCACAGCTTGCCA CCGGTGCTGGCAATGGCGGCAACTATAAGATACGTCCGTCATCCCTGCCT CGTTCCCCTGCTTGTCCTCCTCAACCTTCTCTTGGCCAGCACACCCTGTG CCTTTTCCTTCATCCCCTCCCTTTCCCACCTAAAGCCGCTTCATTCTTCG CCGCTTTCCTCCTCTCCTCCCCGCGACCGCCGCCAGCACGGCGTCCTCCA AATGCGCACCAAGCCGTCTGGGGAGGAACGCGAGCGTGGCGTTGCCGAAA AAGAGCTCCGGGAAAAGCAAAGCCAAGTGTTGTTATCGCAACGCATTCAG CACATTCGTCGCTTGCGGGCCTCGAGACGCGAGGACATAATGGAAACTGA GTGGTATAATCCCAAAAAACCCAACCCGGATTGGCGGAACGCCGCGGAAG GAAGCAAGGGTAGAGAAGGAGGGGAGGCAGCTGCGATGGAGGAATTGAGT GCCATGTTGGAATTCAAGGCGGAGCGTGGCTCGGGGGGGAGTGTGGTGAA TGTCTACGCCAAGGAGGAGGAAGCTGCGAAAGCTCAAGCGCAAAGGATGG GAGGAGGAAATTTCCCAGCAGCGGTAGCGGCAGCGGCGGCAGCGGGTGTG GTTGTGCCGTTGTCCTCTCCACTTCCTTATTCTTCTTCTTCGCCTTCGTC ATCAGTGCCAGGAGGGGAGCAGCAGCATCAACAACAGCAGCAGCAAGAGC AACAGCAGCCGGAGGTGTTGATAGGCAAGGCTTTGAAGCGGCACGATTAC GCGCCTCTTTCGGCTTGGCGATGCCTCCAGCGGTCTGAAAATGCTAGAGA AGGACAAGTGCAAGTCACGTACAACAGTGTGCGGGTGAGATATATGGAGT GGCAAGGGAGGGATGCAGGGAGGGAGGGGGGTAGAGTGTCGAGAAGGAGG TCATGAGATGCTAGCGCGCTTTGAATGGTGATGGTATATTGTAGCACACG AATGTAGATCATACATACATCTTTGAATAGATACTCTTCATGTCTCCTCC GCCCGCATCTTACCCTTCCTCAATTTGTCTTTCCCTGCATCCCTCCTTCC TTACACCGCCGCACAGGGCACCAGCAAGTACGTCATCGTCCTGGTCGACC CCAGCCAATCCGCACTCACGCTCACAGAAGGACTTAAACGCATGCGGATC ATCCCTCCCTCTCTCGCCGCCGTCGTGGGTGTGACAATTCTACCTCCTCA GGACGCGCAGCGCCTGGCCAAAAAAAGCGGGTTGCCACCCTTCTCCTCCC CCTCCTCCTCCTCCTCTCCCTCCTCCTCTCCCTCCCTCCTCAGCGACCCT TCTCATCAATGGATGGATGCCCATGGCATTCCTCGCTTGTCGATGCGTCC GCTTTTCTTGGTGTTGGATGGCGCGAAAGGCACCGTGCTGCTGGTGGTCC GTGACCCTGTTGCGGGGGCGTTGAACGACTTGGTAATGGAGGTAATAGGG GACTGGCGAGGGAGGGGATGAGGAGTAAGGTAGAGCCCACACGATGGCGA TGCCTCGAGCTCGTTCAGTCGCTGCTGACACTATTGTACACGTCTTCGAT CCCTTAATCCTGGATGGGCCCTAAATTGTAATCAACTAAAGCAAAGAACA AAATGAAAGAAATAATACTTGGGAAAAGAAGAAAAAGGGAAGTGCGTGAT GGAAAAAAGAATTGTGTCGA
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Coding sequence (CDS) from alignment at chr6:1122613..1125082-

>NO06G04010.1 ID=NO06G04010.1|Name=NO06G04010.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr6:1122613..1125082- (Nannochloropsis oceanica)
ATGGCGGCAACTATAAGATACGTCCGTCATCCCTGCCTCGTTCCCCTGCT
TGTCCTCCTCAACCTTCTCTTGGCCAGCACACCCTGTGCCTTTTCCTTCA
TCCCCTCCCTTTCCCACCTAAAGCCGCTTCATTCTTCGCCGCTTTCCTCC
TCTCCTCCCCGCGACCGCCGCCAGCACGGCGTCCTCCAAATGCGCACCAA
GCCGTCTGGGGAGGAACGCGAGCGTGGCGTTGCCGAAAAAGAGCTCCGGG
AAAAGCAAAGCCAAGTGTTGTTATCGCAACGCATTCAGCACATTCGTCGC
TTGCGGGCCTCGAGACGCGAGGACATAATGGAAACTGAGTGGTATAATCC
CAAAAAACCCAACCCGGATTGGCGGAACGCCGCGGAAGGAAGCAAGGGTA
GAGAAGGAGGGGAGGCAGCTGCGATGGAGGAATTGAGTGCCATGTTGGAA
TTCAAGGCGGAGCGTGGCTCGGGGGGGAGTGTGGTGAATGTCTACGCCAA
GGAGGAGGAAGCTGCGAAAGCTCAAGCGCAAAGGATGGGAGGAGGAAATT
TCCCAGCAGCGGTAGCGGCAGCGGCGGCAGCGGGTGTGGTTGTGCCGTTG
TCCTCTCCACTTCCTTATTCTTCTTCTTCGCCTTCGTCATCAGTGCCAGG
AGGGGAGCAGCAGCATCAACAACAGCAGCAGCAAGAGCAACAGCAGCCGG
AGGTGTTGATAGGCAAGGCTTTGAAGCGGCACGATTACGCGCCTCTTTCG
GCTTGGCGATGCCTCCAGCGGTCTGAAAATGCTAGAGAAGGACAAGTGCA
AGTCACGTACAACAGTGTGCGGGGCACCAGCAAGTACGTCATCGTCCTGG
TCGACCCCAGCCAATCCGCACTCACGCTCACAGAAGGACTTAAACGCATG
CGGATCATCCCTCCCTCTCTCGCCGCCGTCGTGGGTGTGACAATTCTACC
TCCTCAGGACGCGCAGCGCCTGGCCAAAAAAAGCGGGTTGCCACCCTTCT
CCTCCCCCTCCTCCTCCTCCTCTCCCTCCTCCTCTCCCTCCCTCCTCAGC
GACCCTTCTCATCAATGGATGGATGCCCATGGCATTCCTCGCTTGTCGAT
GCGTCCGCTTTTCTTGGTGTTGGATGGCGCGAAAGGCACCGTGCTGCTGG
TGGTCCGTGACCCTGTTGCGGGGGCGTTGAACGACTTGGTAATGGAGGTA
ATAGGGGACTGGCGAGGGAGGGGATGA
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Synonyms
Publications