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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1122613..1125082 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04010.1 vs.
Match: EWM26398.1 (hypothetical protein Naga_100365g2 [Nannochloropsis gaditana]) HSP 1 Score: 371.3 bits (952), Expect = 3.800e-99 Identity = 224/391 (57.29%), Postives = 273/391 (69.82%), Query Frame = 0
Query: 22 LLLASTPCAFSFIPSLSHLKPLHSSPL----SSSPPRDRRQHGVLQMRTKPSGEERERGVAEKELREKQSQVLLSQRIQHIRRLRASRREDIMETEWYNPKKPNPDWRNAAEGSKGR-EGGEAAAMEELSAMLEFKAERGSGGSVVNVYAKEEEAAKAQAQRMGGGNFPAAVAAAAAAGVVVPLSSPLPYSSSSPSSSVPGGEQQHQQQQQQEQQQPEVLIGKALKRHDYAPLSAWRCLQRSENAREGQVQVTYNSVRGTSKYVIVLVDPSQSALTLTEGLKRMRIIPPSLAAVVGVTILPPQDAQRLAKKSGLPPFSSPSSSSSPSSSPSLLSDPSHQWMDAHGIPRLSMRPLFLVLDGAKGTVLLVVRDPVAGALNDLVMEVIGDWRGR 408
L LA++ A++++PS S SS L SSSP RR LQMR KPSGEERERG+AEK+LREK SQVLLSQRIQHIRRLRASRRED+M TEWY P KPNPDWR AAEG + R EG EAAAM+EL+AML++ AERG+GGSVVNVYAKEEEAA+A AQ++ GG+ A A+GV + P+P SS + + +V +G+ALKRHDYAPL+ WRCL+R EG+ TYN +RGT KYV++LVDP+ +A TL EGL RMRIIP SLAAVVGVT L + RLAKK+GL +++ S+S LLSD S+ WMDA+G+PRLS+RP L+LDG+ G VL V RDP G LND VMEV+GDWRG+
Sbjct: 41 LALAASRAAYAYLPSHSFFFSSSSSSLVASFSSSPRIKRRHPAALQMRMKPSGEERERGLAEKDLREKHSQVLLSQRIQHIRRLRASRREDVMATEWYCPTKPNPDWRYAAEGERPRGEGREAAAMDELTAMLDYHAERGAGGSVVNVYAKEEEAAEAFAQKL-GGSLAAFDRVTQASGVPGGVPPPVPLSSVASTPAV---------------------VGRALKRHDYAPLAVWRCLRRWAGNAEGE-PCTYNGIRGTGKYVVILVDPNLAATTLVEGLNRMRIIPSSLAAVVGVTPLSCPELARLAKKAGL-------TATGASTSTYLLSDTSYSWMDAYGLPRLSLRPWLLILDGSTGMVLSVKRDPTPGTLNDAVMEVVGDWRGK 401
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04010.1 ID=NO06G04010.1|Name=NO06G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp TCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTTCTTCTTCTTTTTCTTCTT CTCTTTCCAAATAGTCAGCGGTGGAAGGTGGTGGCAAGCCAAACGGAGAA AGGGCCAAGCAGTCCATGTACTCTCGCAACGGCTTGGGGGGCTCCATCCG CATCAGCTCCTCCCAGTCCTCCATCATCTTCCCACTCTCCATCATCACGA ACGTCCCTTCCGCGGTCCCCGGACCATACTGACCACCGCCCTCCCTTCCT TTCTCGTCTTCTCCCCATTCCCCGTATGGATCAAGAAAGTCTGCGAGCTT GAATTTGATTTTTTCCGCTGATGGTGGTGGTGCCTGCTCCTTCTGTTGGG GGGTGGGCGCGGCTCGTGCTTTTTTTCTGTCCTCTTTACTGCCGCTGCTG GGCTTGCGGGAGGCCTTCACTCTTATGGGGCCGGAGGAGAGGGCCAGGAA CATGACTGAGAGTGACACCAGAGCCGGTTGTCTTGGTCGTGACGCGCTGG GAGCCATGCCTGTCAATATTTGTGGAGGGTGGGGGTATTGAAGTCCTTTT GGGAGGGTGATTGGATCGATCTGTCACGGTCGCCGTGAGCGATTGAGAAA GAGAGGTGCCTTGACGCAGGCACGATGACGATGCTTGACCATATCGTATA CGTAGGGTAGGTGTGCTGTGAGCTGTGCGAGTTTGCCTGTGGCTTTCAGG CGCATTTGCGATTCCTCGTTCAACCTCCCGGCGCCGCTCGCACCCACCCC TTCCCGCTCCCCCTCACGCGCTCCCATGCACATCACACCACAGCTTGCCA CCGGTGCTGGCAATGGCGGCAACTATAAGATACGTCCGTCATCCCTGCCT CGTTCCCCTGCTTGTCCTCCTCAACCTTCTCTTGGCCAGCACACCCTGTG CCTTTTCCTTCATCCCCTCCCTTTCCCACCTAAAGCCGCTTCATTCTTCG CCGCTTTCCTCCTCTCCTCCCCGCGACCGCCGCCAGCACGGCGTCCTCCA AATGCGCACCAAGCCGTCTGGGGAGGAACGCGAGCGTGGCGTTGCCGAAA AAGAGCTCCGGGAAAAGCAAAGCCAAGTGTTGTTATCGCAACGCATTCAG CACATTCGTCGCTTGCGGGCCTCGAGACGCGAGGACATAATGGAAACTGA GTGGTATAATCCCAAAAAACCCAACCCGGATTGGCGGAACGCCGCGGAAG GAAGCAAGGGTAGAGAAGGAGGGGAGGCAGCTGCGATGGAGGAATTGAGT GCCATGTTGGAATTCAAGGCGGAGCGTGGCTCGGGGGGGAGTGTGGTGAA TGTCTACGCCAAGGAGGAGGAAGCTGCGAAAGCTCAAGCGCAAAGGATGG GAGGAGGAAATTTCCCAGCAGCGGTAGCGGCAGCGGCGGCAGCGGGTGTG GTTGTGCCGTTGTCCTCTCCACTTCCTTATTCTTCTTCTTCGCCTTCGTC ATCAGTGCCAGGAGGGGAGCAGCAGCATCAACAACAGCAGCAGCAAGAGC AACAGCAGCCGGAGGTGTTGATAGGCAAGGCTTTGAAGCGGCACGATTAC GCGCCTCTTTCGGCTTGGCGATGCCTCCAGCGGTCTGAAAATGCTAGAGA AGGACAAGTGCAAGTCACGTACAACAGTGTGCGGGGCACCAGCAAGTACG TCATCGTCCTGGTCGACCCCAGCCAATCCGCACTCACGCTCACAGAAGGA CTTAAACGCATGCGGATCATCCCTCCCTCTCTCGCCGCCGTCGTGGGTGT GACAATTCTACCTCCTCAGGACGCGCAGCGCCTGGCCAAAAAAAGCGGGT TGCCACCCTTCTCCTCCCCCTCCTCCTCCTCCTCTCCCTCCTCCTCTCCC TCCCTCCTCAGCGACCCTTCTCATCAATGGATGGATGCCCATGGCATTCC TCGCTTGTCGATGCGTCCGCTTTTCTTGGTGTTGGATGGCGCGAAAGGCA CCGTGCTGCTGGTGGTCCGTGACCCTGTTGCGGGGGCGTTGAACGACTTG GTAATGGAGGTAATAGGGGACTGGCGAGGGAGGGGATGAGGAGTAAGGTA GAGCCCACACGATGGCGATGCCTCGAGCTCGTTCAGTCGCTGCTGACACT ATTGTACACGTCTTCGATCCCTTAATCCTGGATGGGCCCTAAATTGTAAT CAACTAAAGCAAAGAACAAAATGAAAGAAATAATACTTGGGAAAAGAAGA AAAAGGGAAGTGCGTGATGGAAAAAAGAATTGTGTCGA back to topprotein sequence of NO06G04010.1 >NO06G04010.1-protein ID=NO06G04010.1-protein|Name=NO06G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp MAATIRYVRHPCLVPLLVLLNLLLASTPCAFSFIPSLSHLKPLHSSPLSS SPPRDRRQHGVLQMRTKPSGEERERGVAEKELREKQSQVLLSQRIQHIRR LRASRREDIMETEWYNPKKPNPDWRNAAEGSKGREGGEAAAMEELSAMLE FKAERGSGGSVVNVYAKEEEAAKAQAQRMGGGNFPAAVAAAAAAGVVVPL SSPLPYSSSSPSSSVPGGEQQHQQQQQQEQQQPEVLIGKALKRHDYAPLS AWRCLQRSENAREGQVQVTYNSVRGTSKYVIVLVDPSQSALTLTEGLKRM RIIPPSLAAVVGVTILPPQDAQRLAKKSGLPPFSSPSSSSSPSSSPSLLS DPSHQWMDAHGIPRLSMRPLFLVLDGAKGTVLLVVRDPVAGALNDLVMEV IGDWRGRG* back to topmRNA from alignment at chr6:1122613..1125082- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04010.1 ID=NO06G04010.1|Name=NO06G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2470bp|location=Sequence derived from alignment at chr6:1122613..1125082- (Nannochloropsis oceanica) TCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTTCTTCTTCTTTTTCTTCTT
CTCTTTCCAAATAGTCAGCGGTGGAAGGTGGTGGCAAGCCAAACGGAGAA
AGGGCCAAGCAGTCCATGTACTCTCGCAACGGCTTGGGGGGCTCCATCCG
CATCAGCTCCTCCCAGTCCTCCATCATCTTCCCACTCTCCATCATCACGA
ACGTCCCTTCCGCGGTCCCCGGACCATACTGACCACCGCCCTCCCTTCCT
TTCTCGTCTTCTCCCCATTCCCCGTATGGATCAAGAAAGTCTGCGAGCTT
GAATTTGATTTTTTCCGCTGATGGTGGTGGTGCCTGCTCCTTCTGTTGGG
GGGTGGGCGCGGCTCGTGCTTTTTTTCTGTCCTCTTTACTGCCGCTGCTG
GGCTTGCGGGAGGCCTTCACTCTTATGGGGCCGGAGGAGAGGGCCAGGAA
CATGACTGAGAGTGACACCAGAGCCGGTTGTCTTGGTCGTGACGCGCTGG
GAGCCATGCCTGTCAATATTTGTGGAGGGTGGGGGTATTGAAGTCCTTTT
GGGAGGGTGATTGGATCGATCTGTCACGGTCGCCGTGAGCGATTGAGAAA
GAGAGGTGCCTTGACGCAGGCACGATGACGATGCTTGACCATATCGTATA
CGTAGGGTAGGTGTGCTGTGAGCTGTGCGAGTTTGCCTGTGGCTTTCAGG
CGCATTTGCGATTCCTCGTTCAACCTCCCGGCGCCGCTCGCACCCACCCC
TTCCCGCTCCCCCTCACGCGCTCCCATGCACATCACACCACAGCTTGCCA
CCGGTGCTGGCAATGGCGGCAACTATAAGATACGTCCGTCATCCCTGCCT
CGTTCCCCTGCTTGTCCTCCTCAACCTTCTCTTGGCCAGCACACCCTGTG
CCTTTTCCTTCATCCCCTCCCTTTCCCACCTAAAGCCGCTTCATTCTTCG
CCGCTTTCCTCCTCTCCTCCCCGCGACCGCCGCCAGCACGGCGTCCTCCA
AATGCGCACCAAGCCGTCTGGGGAGGAACGCGAGCGTGGCGTTGCCGAAA
AAGAGCTCCGGGAAAAGCAAAGCCAAGTGTTGTTATCGCAACGCATTCAG
CACATTCGTCGCTTGCGGGCCTCGAGACGCGAGGACATAATGGAAACTGA
GTGGTATAATCCCAAAAAACCCAACCCGGATTGGCGGAACGCCGCGGAAG
GAAGCAAGGGTAGAGAAGGAGGGGAGGCAGCTGCGATGGAGGAATTGAGT
GCCATGTTGGAATTCAAGGCGGAGCGTGGCTCGGGGGGGAGTGTGGTGAA
TGTCTACGCCAAGGAGGAGGAAGCTGCGAAAGCTCAAGCGCAAAGGATGG
GAGGAGGAAATTTCCCAGCAGCGGTAGCGGCAGCGGCGGCAGCGGGTGTG
GTTGTGCCGTTGTCCTCTCCACTTCCTTATTCTTCTTCTTCGCCTTCGTC
ATCAGTGCCAGGAGGGGAGCAGCAGCATCAACAACAGCAGCAGCAAGAGC
AACAGCAGCCGGAGGTGTTGATAGGCAAGGCTTTGAAGCGGCACGATTAC
GCGCCTCTTTCGGCTTGGCGATGCCTCCAGCGGTCTGAAAATGCTAGAGA
AGGACAAGTGCAAGTCACGTACAACAGTGTGCGGGTGAGATATATGGAGT
GGCAAGGGAGGGATGCAGGGAGGGAGGGGGGTAGAGTGTCGAGAAGGAGG
TCATGAGATGCTAGCGCGCTTTGAATGGTGATGGTATATTGTAGCACACG
AATGTAGATCATACATACATCTTTGAATAGATACTCTTCATGTCTCCTCC
GCCCGCATCTTACCCTTCCTCAATTTGTCTTTCCCTGCATCCCTCCTTCC
TTACACCGCCGCACAGGGCACCAGCAAGTACGTCATCGTCCTGGTCGACC
CCAGCCAATCCGCACTCACGCTCACAGAAGGACTTAAACGCATGCGGATC
ATCCCTCCCTCTCTCGCCGCCGTCGTGGGTGTGACAATTCTACCTCCTCA
GGACGCGCAGCGCCTGGCCAAAAAAAGCGGGTTGCCACCCTTCTCCTCCC
CCTCCTCCTCCTCCTCTCCCTCCTCCTCTCCCTCCCTCCTCAGCGACCCT
TCTCATCAATGGATGGATGCCCATGGCATTCCTCGCTTGTCGATGCGTCC
GCTTTTCTTGGTGTTGGATGGCGCGAAAGGCACCGTGCTGCTGGTGGTCC
GTGACCCTGTTGCGGGGGCGTTGAACGACTTGGTAATGGAGGTAATAGGG
GACTGGCGAGGGAGGGGATGAGGAGTAAGGTAGAGCCCACACGATGGCGA
TGCCTCGAGCTCGTTCAGTCGCTGCTGACACTATTGTACACGTCTTCGAT
CCCTTAATCCTGGATGGGCCCTAAATTGTAATCAACTAAAGCAAAGAACA
AAATGAAAGAAATAATACTTGGGAAAAGAAGAAAAAGGGAAGTGCGTGAT
GGAAAAAAGAATTGTGTCGA back to topCoding sequence (CDS) from alignment at chr6:1122613..1125082- >NO06G04010.1 ID=NO06G04010.1|Name=NO06G04010.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr6:1122613..1125082- (Nannochloropsis oceanica) ATGGCGGCAACTATAAGATACGTCCGTCATCCCTGCCTCGTTCCCCTGCT TGTCCTCCTCAACCTTCTCTTGGCCAGCACACCCTGTGCCTTTTCCTTCA TCCCCTCCCTTTCCCACCTAAAGCCGCTTCATTCTTCGCCGCTTTCCTCC TCTCCTCCCCGCGACCGCCGCCAGCACGGCGTCCTCCAAATGCGCACCAA GCCGTCTGGGGAGGAACGCGAGCGTGGCGTTGCCGAAAAAGAGCTCCGGG AAAAGCAAAGCCAAGTGTTGTTATCGCAACGCATTCAGCACATTCGTCGC TTGCGGGCCTCGAGACGCGAGGACATAATGGAAACTGAGTGGTATAATCC CAAAAAACCCAACCCGGATTGGCGGAACGCCGCGGAAGGAAGCAAGGGTA GAGAAGGAGGGGAGGCAGCTGCGATGGAGGAATTGAGTGCCATGTTGGAA TTCAAGGCGGAGCGTGGCTCGGGGGGGAGTGTGGTGAATGTCTACGCCAA GGAGGAGGAAGCTGCGAAAGCTCAAGCGCAAAGGATGGGAGGAGGAAATT TCCCAGCAGCGGTAGCGGCAGCGGCGGCAGCGGGTGTGGTTGTGCCGTTG TCCTCTCCACTTCCTTATTCTTCTTCTTCGCCTTCGTCATCAGTGCCAGG AGGGGAGCAGCAGCATCAACAACAGCAGCAGCAAGAGCAACAGCAGCCGG AGGTGTTGATAGGCAAGGCTTTGAAGCGGCACGATTACGCGCCTCTTTCG GCTTGGCGATGCCTCCAGCGGTCTGAAAATGCTAGAGAAGGACAAGTGCA AGTCACGTACAACAGTGTGCGGGGCACCAGCAAGTACGTCATCGTCCTGG TCGACCCCAGCCAATCCGCACTCACGCTCACAGAAGGACTTAAACGCATG CGGATCATCCCTCCCTCTCTCGCCGCCGTCGTGGGTGTGACAATTCTACC TCCTCAGGACGCGCAGCGCCTGGCCAAAAAAAGCGGGTTGCCACCCTTCT CCTCCCCCTCCTCCTCCTCCTCTCCCTCCTCCTCTCCCTCCCTCCTCAGC GACCCTTCTCATCAATGGATGGATGCCCATGGCATTCCTCGCTTGTCGAT GCGTCCGCTTTTCTTGGTGTTGGATGGCGCGAAAGGCACCGTGCTGCTGG TGGTCCGTGACCCTGTTGCGGGGGCGTTGAACGACTTGGTAATGGAGGTA ATAGGGGACTGGCGAGGGAGGGGATGA back to top
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