NO06G03730, NO06G03730 (gene) Nannochloropsis oceanica

Overview
NameNO06G03730
Unique NameNO06G03730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2380
Alignment locationchr6:1030325..1032704 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1030325..1032704 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028045DUF4539
Homology
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BLAST of NO06G03730 vs. NCBI_GenBank
Match: EWM26354.1 (hypothetical protein Naga_100031g19 [Nannochloropsis gaditana])

HSP 1 Score: 221.1 bits (562), Expect = 1.200e-53
Identity = 127/255 (49.80%), Postives = 150/255 (58.82%), Query Frame = 0 
Query:    1 MAYAGS------GPPGIDDGGGGGFPVQHRQPRRFPGPLGLLGATIDGRGSRSDPEQYMKXXXXXXXXXXXXXXXXXXXXTAMSSSNTPDLGLL-HFLQPNGAWQNMCRDYGLPISXXXXXXXXXXXXXXXXXXXSSLSQQHVTTAQILQRVLGCTCSEVAQGWQDETLRVGRKLAGVVTAVDHTADGSVSFTLADPTGKVHGYLHTDVIEEYGPDVAVGCVMVLSGVAIFVSGPGVQRWLNVVPENVRGFYPAV 249
            MAY GS      G  GID  GGG   +  + P RFPGPLGLLG+    R   +  +                         + + SN  ++ LL +F QP GAW  MC DYGLP+S                          V  AQ L+ VLGCTC+EVA GWQDE LRVG+K+AGV+ A+++T+DGSVS T ADPTG+V GYLH DVI+EYGPD+ VG VMVLSG AI VSGPGVQRWLNVVPENVRGFY AV
Sbjct:    1 MAYTGSTQAEKGGEGGIDKRGGG---LPWQPPPRFPGPLGLLGS----RHPATSDQDSAGRTYRDLDKQERQQTQEPLNPPSGTGSNAVNVNLLPYFKQPRGAWHQMCEDYGLPVSG-------------------------VVNAQDLRAVLGCTCAEVALGWQDEALRVGKKMAGVLAALNYTSDGSVSVTFADPTGRVQGYLHPDVIDEYGPDLCVGSVMVLSGAAILVSGPGVQRWLNVVPENVRGFYKAV 223
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BLAST of NO06G03730 vs. NCBI_GenBank
Match: CBN75592.1 (hypothetical protein Esi_0148_0028 [Ectocarpus siliculosus])

HSP 1 Score: 66.2 bits (160), Expect = 4.800e-7
Identity = 31/80 (38.75%), Postives = 47/80 (58.75%), Query Frame = 0 
Query:  168 LAGVVTAVDHTADGSVSFTLADPTGKVHGYLHTDVIEEYGPDVAVGCVMVLSGVAIFVSGPGVQRWLNVVPENVRGFYPA 248
            +  V+ +    +   V   L DP+G++ G+LH   +EE+GP +  G  ++L  V+IFVSGPG  R LNV P+ V   +PA
Sbjct:  103 VTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPGTTRLLNVHPDCVLAVFPA 182
The following BLAST results are available for this feature:
BLAST of NO06G03730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26354.11.200e-5349.80hypothetical protein Naga_100031g19 [Nannochlorops... [more]
CBN75592.14.800e-738.75hypothetical protein Esi_0148_0028 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000103NSK000103Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03730.1NO06G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|125056gene_6702Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100031g19gene4158Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03730.1NO06G03730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03730 ID=NO06G03730|Name=NO06G03730|organism=Nannochloropsis oceanica|type=gene|length=2380bp
ATGGCGTACGCGGGCAGCGGCCCTCCAGGAATAGATGATGGTGGAGGAGG
GGGCTTTCCAGTGCAGCACCGACAGCCTCGACGTTTTCCAGGACCGTTGG
GCTTACTCGGCGCAACCATCGATGGTAGGGGCAGCAGATCGGACCCCGAA
CAATACATGAAGCAGCAGCAGCAGCTGCACCAGCAGCCACCGCAGCAGGA
AGGCCTTATCAAAGCGAGTTCCACAGCCATGAGTAGCAGTAACACTCCTG
ATTTGGGCCTCCTCCATTTTCTCCAACCCAATGGGGCCTGGCAAAACATG
TGCCGGGATTACGGCTTGCCCATCTCCTCCTCCTCCTCCTCGTCCTCCTC
CCCCCCCTCCTCCTCCTCGTTCTCCGCATTGCCGTCGTCGTTATCACAGC
AGCATGTCACCACCGCCCAAATCCTGCAACGAGTCCTCGGGTGCACTTGC
TCGGAGGTCGCACAGGGCTGGCAAGACGAAACCCTGCGGGTGGGTCGAAA
GCTTGCCGGAGTCGTGACCGCTGTGGATCACACGGCAGACGGGAGCGTCA
GTTTCACCTTGGCAGATCCCACGGGAAAAGTACATGGTTATTTGCACACG
GATGTGATTGAGGAGTACGGGCCTGATGTGGCAGTAGGGTGCGTGATGGT
GTTGAGTGGAGTAGCTATCTTTGTGAGTGGCCCGGGGGTGCAGAGGTGGT
TGAATGTCGTGCCTGAGAATGTGAGGGGCTTCTATCCAGCGGTAAGGCGA
GGAGGGGAAAAAGGAGGCGGAGGAGGGGAGGGAGGAAGAATGATGATGGT
AGATGCTGGGGAGGGCGGGGAGCAGGAAGATGCAAGGAGGAGCTTGGTGG
GGATGAAGCATGAGAGGGGACAGAAGGAGGAGGAGCAAAAGGAGGAGGTT
GAAATAATGGATGAGAGTGAGGGATATAATGGTGGCGGAGGAGAAGAAGA
TTTTGCAAGAGGTTTTCATTTGCCCTCTTATAACCCCGCACCATCTGCGG
CTCTTGTTCAGCAGCAGCAGCAGCAGCAGCGGCAGTACGAACGGCAATAT
CAAGAGGAACAGCAGCAGCACTTTCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGAGCTACAACTTCAACAAGAGAGGC
AGTGCGTACCTGGCATACGGCTTAACATGGGTTGGGAGTCAGAAGAGGCT
CGTTTGCATGCCTTGGCGCTACTAGGGGGCACCGTGGTGAGTAGCACAAA
CAAGGAGGAGGAGGGGAAGGAAGAAGGAGAGGGGGAGGAAGAAAGCGAGG
AAAGGATGGAGGAAGGGGAGGAGGAGAGTGGACCTGTAGATATGTTTTCG
GGGTCGCCGATGGGAAAGGACCTATCAGCGCAGCAGCAGCAGCAGCAGCA
ACAACAACAACACAACATTTTCCAGCACCCTGGCAACTTTCCCTTGCGCA
GTTCCGATGGTGACAGGGAATGGGATGTAAGTAGCAGCAGCAGCATCAGC
AGCAGCCGACCCATCGGTATCCCTTATGTTGGTCAGGCGCACCTGAAGCA
GGAGCAGCAGCCCTTCACCACGTCCTCTTCCTCCGCTTCTTACGTTCCTG
GCTTTGGAGGAGCAGGAGGAGGAGGAGGAGGAAGAGGGGGAGGATTCACC
GGGCCATCGTCATTGGACTCGATGGTTGCTCAGCCGGACGAGGATGTGAC
GTACCGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGCGGGGG
GAAGGAGTAAGCTGGGTGGTGAGAACTTTGCGGCGTTGGCGCGAGGCTTT
GCTGGAAGCTGGGGAGGAGGGGGAGGAGGAGGAGGAGGACGAGGGGTAGA
AGGATATATGGATTCGGAGAGGGGAGGTGAAGCGGAGCAGGAAGAGGGGA
ATGAGGAGGATATGGATGATTTGGGGGCTTTGACCAGGGCTATCGCCGAT
GCGGGAGGAGGAGGAATAGGAAGAGGACGAGGCAGAAGAGGGGAAGGGGA
AGGGATAGGGGGACAAGGGACCCGTGAGGCGTTGCTTGCTCCTCCTCCTG
GATGTGTAGGGCCGAGTTTGACTGGGGAGAAGGAAGAGGAGGAGGATGAG
AGGGAAGGGGAGGGGAGAAGAGGAGGGGAGGGGTTTCTATTCGAAGGGGG
GGGAGGAGGGAGGGGGGAAACTCCGGCACACCATTTGTTGGATGAGGCGT
TGGAGGATGACGAGGCTCTTTGGTCGTAATAGTGGAAGTTTTGTCAGGGG
GAATGTTGTAAGCATGGAGGAAAAGGAGAAGAAAGGAGGATGGTGTGTAT
GCAGTAAGAGGTACATATGTGTGAGAGTAATGTGTGAATGGGCACTGTAT
CAAAGAAAGTGAACAATATAATATTTTAGA
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protein sequence of NO06G03730.1

>NO06G03730.1-protein ID=NO06G03730.1-protein|Name=NO06G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=743bp
MAYAGSGPPGIDDGGGGGFPVQHRQPRRFPGPLGLLGATIDGRGSRSDPE
QYMKQQQQLHQQPPQQEGLIKASSTAMSSSNTPDLGLLHFLQPNGAWQNM
CRDYGLPISSSSSSSSSPPSSSSFSALPSSLSQQHVTTAQILQRVLGCTC
SEVAQGWQDETLRVGRKLAGVVTAVDHTADGSVSFTLADPTGKVHGYLHT
DVIEEYGPDVAVGCVMVLSGVAIFVSGPGVQRWLNVVPENVRGFYPAVRR
GGEKGGGGGEGGRMMMVDAGEGGEQEDARRSLVGMKHERGQKEEEQKEEV
EIMDESEGYNGGGGEEDFARGFHLPSYNPAPSAALVQQQQQQQRQYERQY
QEEQQQHFQQQQQQQQQQQQQQQQQELQLQQERQCVPGIRLNMGWESEEA
RLHALALLGGTVVSSTNKEEEGKEEGEGEEESEERMEEGEEESGPVDMFS
GSPMGKDLSAQQQQQQQQQQHNIFQHPGNFPLRSSDGDREWDVSSSSSIS
SSRPIGIPYVGQAHLKQEQQPFTTSSSSASYVPGFGGAGGGGGGRGGGFT
GPSSLDSMVAQPDEDVTYRGGGGGGGGGGGGAGGRSKLGGENFAALARGF
AGSWGGGGGGGGGRGVEGYMDSERGGEAEQEEGNEEDMDDLGALTRAIAD
AGGGGIGRGRGRRGEGEGIGGQGTREALLAPPPGCVGPSLTGEKEEEEDE
REGEGRRGGEGFLFEGGGGGRGETPAHHLLDEALEDDEALWS*
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Synonyms
Publications