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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1030325..1032704 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03730.1 vs.
Match: EWM26354.1 (hypothetical protein Naga_100031g19 [Nannochloropsis gaditana]) HSP 1 Score: 202.6 bits (514), Expect = 4.300e-48 Identity = 282/777 (36.29%), Postives = 358/777 (46.07%), Query Frame = 0
Query: 1 MAYAGS-----GPPGIDDGGGGGFPVQHRQPRRFPGPLGLLGATIDGRGSRSDPEQYMKQQQQLHQQPPQQ--EGLIKASSTAMSSSNTPDLGLL-HFLQPNGAWQNMCRDYGLPISSSSSSSSSPPSSSSFSALPSSLSQQHVTTAQILQRVLGCTCSEVAQGWQDETLRVGRKLAGVVTAVDHTADGSVSFTLADPTGKVHGYLHTDVIEEYGPDVAVGCVMVLSGVAIFVSGPGVQRWLNVVPENVRGFYPAVRRGGEK-------GGGGGEGGRMMMVDAGEGGEQEDARRSLVGMKHERGQKEEEQKEEVEIMDESEGYNGGGGEEDFARGFHLPSYNPAPSAALVQQQQQQQRQYERQYQEEQQQHFQQQQQQQQQQQQQQQQQELQLQQERQCVPGIRLNMGWESEEARLHALALLGGTVVSSTNKEEEGKEEGEGEEESEERMEEGEEESGPVDMFSGSPMGKDLSAQ---QQQQQQQQQHNIFQHPGNFPLRSSDGDREWDVSSSSSISSSRPIGIPYVGQA---HLKQEQQPF----TTSSSSASYVPGFGGAGGGGGGRGGG----FTGPSSLDSMVAQPDEDVTYRGGGGGGGGGGGGAGGRSKLGGENFAALARGFAGSWGGGGGGGGGRGVEGYMDSERGGEAEQEEGNEEDMDDLGALTRAIADAGGGGIGRGRGRRGEGEGIGGQGTREALLA-----PPPGCVGPS-LTGEKEEEEDEREGEGRRGGEGFLFEGGGGGRGETPAHHLLDEALEDDEALWS 743
MAY GS G G D GGG P Q P RFPGPLGLLG+ + SD + + + L +Q QQ E L S T SN ++ LL +F QP GAW MC DYGLP+S V AQ L+ VLGCTC+EVA GWQDE LRVG+K+AGV+ A+++T+DGSVS T ADPTG+V GYLH DVI+EYGPD+ VG VMVLSG AI VSGPGVQRWLNVVPENVRGFY AV G EK GG E G +M VD E G R +EEE + + D G GG G ++ R + ++ P P A+ Q + + ++ ++Q PG+ +GG EEG E EG EE E + EGEE+ +D+ G+ ++ + + + ++ FQHPG F S G P G+A + Q+P + ++S ++Y G G G GRG G F GPSSLDS VAQP +DV R G GGR E AL + + G G G G M+ E+GG E +L+R GG+G G G G G GG G REA+ + PPP VGP + G K+ E + G G GG EGG GGR E +LDEALE+DEALW+
Sbjct: 1 MAYTGSTQAEKGGEGGIDKRGGGLPWQ--PPPRFPGPLGLLGSR---HPATSDQDSAGRTYRDLDKQERQQTQEPLNPPSGTG---SNAVNVNLLPYFKQPRGAWHQMCEDYGLPVSG-------------------------VVNAQDLRAVLGCTCAEVALGWQDEALRVGKKMAGVLAALNYTSDGSVSVTFADPTGRVQGYLHPDVIDEYGPDLCVGSVMVLSGAAILVSGPGVQRWLNVVPENVRGFYKAV--GIEKSEMKKKNGGERVEIGGIMAVDGEEPGRPSGVRYG----------EEEEGLVAMGVEDTERG--GGVGVDESVRPQSVSAHTPNPPASSWHGGGQ-----------------AGEVHSGMRLSMGWATEDSRMQALAMLGPGVD----------------GVGG---------EEGGE--EGMEEGAEDVWEGEEKG--MDLQEGTSWAREGAGEGLGGGPEGMPRREARFQHPGKF------------------FSMDHDCGRPLRGRAGAHSAGRGQEPVEKIGSDAASPSAYFLGLMGGRRRGEGRGEGGISRFEGPSSLDSTVAQPGDDVVER------RKEKEGMGGRKSAEEEACEALLQEWVGRRKAGAEGEEG------MEFEQGGRREG-----------WSLSR-------GGVGEG----GRGSGAGGAG-REAIESGIIPPPPPLSVGPCVIEGGKDREREMLVGVG--GG-----EGGEGGREEV---DVLDEALEEDEALWA 621
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03730.1 ID=NO06G03730.1|Name=NO06G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2380bp ATGGCGTACGCGGGCAGCGGCCCTCCAGGAATAGATGATGGTGGAGGAGG GGGCTTTCCAGTGCAGCACCGACAGCCTCGACGTTTTCCAGGACCGTTGG GCTTACTCGGCGCAACCATCGATGGTAGGGGCAGCAGATCGGACCCCGAA CAATACATGAAGCAGCAGCAGCAGCTGCACCAGCAGCCACCGCAGCAGGA AGGCCTTATCAAAGCGAGTTCCACAGCCATGAGTAGCAGTAACACTCCTG ATTTGGGCCTCCTCCATTTTCTCCAACCCAATGGGGCCTGGCAAAACATG TGCCGGGATTACGGCTTGCCCATCTCCTCCTCCTCCTCCTCGTCCTCCTC CCCCCCCTCCTCCTCCTCGTTCTCCGCATTGCCGTCGTCGTTATCACAGC AGCATGTCACCACCGCCCAAATCCTGCAACGAGTCCTCGGGTGCACTTGC TCGGAGGTCGCACAGGGCTGGCAAGACGAAACCCTGCGGGTGGGTCGAAA GCTTGCCGGAGTCGTGACCGCTGTGGATCACACGGCAGACGGGAGCGTCA GTTTCACCTTGGCAGATCCCACGGGAAAAGTACATGGTTATTTGCACACG GATGTGATTGAGGAGTACGGGCCTGATGTGGCAGTAGGGTGCGTGATGGT GTTGAGTGGAGTAGCTATCTTTGTGAGTGGCCCGGGGGTGCAGAGGTGGT TGAATGTCGTGCCTGAGAATGTGAGGGGCTTCTATCCAGCGGTAAGGCGA GGAGGGGAAAAAGGAGGCGGAGGAGGGGAGGGAGGAAGAATGATGATGGT AGATGCTGGGGAGGGCGGGGAGCAGGAAGATGCAAGGAGGAGCTTGGTGG GGATGAAGCATGAGAGGGGACAGAAGGAGGAGGAGCAAAAGGAGGAGGTT GAAATAATGGATGAGAGTGAGGGATATAATGGTGGCGGAGGAGAAGAAGA TTTTGCAAGAGGTTTTCATTTGCCCTCTTATAACCCCGCACCATCTGCGG CTCTTGTTCAGCAGCAGCAGCAGCAGCAGCGGCAGTACGAACGGCAATAT CAAGAGGAACAGCAGCAGCACTTTCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGGAGCTACAACTTCAACAAGAGAGGC AGTGCGTACCTGGCATACGGCTTAACATGGGTTGGGAGTCAGAAGAGGCT CGTTTGCATGCCTTGGCGCTACTAGGGGGCACCGTGGTGAGTAGCACAAA CAAGGAGGAGGAGGGGAAGGAAGAAGGAGAGGGGGAGGAAGAAAGCGAGG AAAGGATGGAGGAAGGGGAGGAGGAGAGTGGACCTGTAGATATGTTTTCG GGGTCGCCGATGGGAAAGGACCTATCAGCGCAGCAGCAGCAGCAGCAGCA ACAACAACAACACAACATTTTCCAGCACCCTGGCAACTTTCCCTTGCGCA GTTCCGATGGTGACAGGGAATGGGATGTAAGTAGCAGCAGCAGCATCAGC AGCAGCCGACCCATCGGTATCCCTTATGTTGGTCAGGCGCACCTGAAGCA GGAGCAGCAGCCCTTCACCACGTCCTCTTCCTCCGCTTCTTACGTTCCTG GCTTTGGAGGAGCAGGAGGAGGAGGAGGAGGAAGAGGGGGAGGATTCACC GGGCCATCGTCATTGGACTCGATGGTTGCTCAGCCGGACGAGGATGTGAC GTACCGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGCGGGGG GAAGGAGTAAGCTGGGTGGTGAGAACTTTGCGGCGTTGGCGCGAGGCTTT GCTGGAAGCTGGGGAGGAGGGGGAGGAGGAGGAGGAGGACGAGGGGTAGA AGGATATATGGATTCGGAGAGGGGAGGTGAAGCGGAGCAGGAAGAGGGGA ATGAGGAGGATATGGATGATTTGGGGGCTTTGACCAGGGCTATCGCCGAT GCGGGAGGAGGAGGAATAGGAAGAGGACGAGGCAGAAGAGGGGAAGGGGA AGGGATAGGGGGACAAGGGACCCGTGAGGCGTTGCTTGCTCCTCCTCCTG GATGTGTAGGGCCGAGTTTGACTGGGGAGAAGGAAGAGGAGGAGGATGAG AGGGAAGGGGAGGGGAGAAGAGGAGGGGAGGGGTTTCTATTCGAAGGGGG GGGAGGAGGGAGGGGGGAAACTCCGGCACACCATTTGTTGGATGAGGCGT TGGAGGATGACGAGGCTCTTTGGTCGTAATAGTGGAAGTTTTGTCAGGGG GAATGTTGTAAGCATGGAGGAAAAGGAGAAGAAAGGAGGATGGTGTGTAT GCAGTAAGAGGTACATATGTGTGAGAGTAATGTGTGAATGGGCACTGTAT CAAAGAAAGTGAACAATATAATATTTTAGA back to topprotein sequence of NO06G03730.1 >NO06G03730.1-protein ID=NO06G03730.1-protein|Name=NO06G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=743bp MAYAGSGPPGIDDGGGGGFPVQHRQPRRFPGPLGLLGATIDGRGSRSDPE QYMKQQQQLHQQPPQQEGLIKASSTAMSSSNTPDLGLLHFLQPNGAWQNM CRDYGLPISSSSSSSSSPPSSSSFSALPSSLSQQHVTTAQILQRVLGCTC SEVAQGWQDETLRVGRKLAGVVTAVDHTADGSVSFTLADPTGKVHGYLHT DVIEEYGPDVAVGCVMVLSGVAIFVSGPGVQRWLNVVPENVRGFYPAVRR GGEKGGGGGEGGRMMMVDAGEGGEQEDARRSLVGMKHERGQKEEEQKEEV EIMDESEGYNGGGGEEDFARGFHLPSYNPAPSAALVQQQQQQQRQYERQY QEEQQQHFQQQQQQQQQQQQQQQQQELQLQQERQCVPGIRLNMGWESEEA RLHALALLGGTVVSSTNKEEEGKEEGEGEEESEERMEEGEEESGPVDMFS GSPMGKDLSAQQQQQQQQQQHNIFQHPGNFPLRSSDGDREWDVSSSSSIS SSRPIGIPYVGQAHLKQEQQPFTTSSSSASYVPGFGGAGGGGGGRGGGFT GPSSLDSMVAQPDEDVTYRGGGGGGGGGGGGAGGRSKLGGENFAALARGF AGSWGGGGGGGGGRGVEGYMDSERGGEAEQEEGNEEDMDDLGALTRAIAD AGGGGIGRGRGRRGEGEGIGGQGTREALLAPPPGCVGPSLTGEKEEEEDE REGEGRRGGEGFLFEGGGGGRGETPAHHLLDEALEDDEALWS* back to topmRNA from alignment at chr6:1030325..1032704- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03730.1 ID=NO06G03730.1|Name=NO06G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2380bp|location=Sequence derived from alignment at chr6:1030325..1032704- (Nannochloropsis oceanica) ATGGCGTACGCGGGCAGCGGCCCTCCAGGAATAGATGATGGTGGAGGAGG
GGGCTTTCCAGTGCAGCACCGACAGCCTCGACGTTTTCCAGGACCGTTGG
GCTTACTCGGCGCAACCATCGATGGTAGGGGCAGCAGATCGGACCCCGAA
CAATACATGAAGCAGCAGCAGCAGCTGCACCAGCAGCCACCGCAGCAGGA
AGGCCTTATCAAAGCGAGTTCCACAGCCATGAGTAGCAGTAACACTCCTG
ATTTGGGCCTCCTCCATTTTCTCCAACCCAATGGGGCCTGGCAAAACATG
TGCCGGGATTACGGCTTGCCCATCTCCTCCTCCTCCTCCTCGTCCTCCTC
CCCCCCCTCCTCCTCCTCGTTCTCCGCATTGCCGTCGTCGTTATCACAGC
AGCATGTCACCACCGCCCAAATCCTGCAACGAGTCCTCGGGTGCACTTGC
TCGGAGGTCGCACAGGGCTGGCAAGACGAAACCCTGCGGGTGGGTCGAAA
GCTTGCCGGAGTCGTGACCGCTGTGGATCACACGGCAGACGGGAGCGTCA
GTTTCACCTTGGCAGATCCCACGGGAAAAGTACATGGTTATTTGCACACG
GATGTGATTGAGGAGTACGGGCCTGATGTGGCAGTAGGGTGCGTGATGGT
GTTGAGTGGAGTAGCTATCTTTGTGAGTGGCCCGGGGGTGCAGAGGTGGT
TGAATGTCGTGCCTGAGAATGTGAGGGGCTTCTATCCAGCGGTAAGGCGA
GGAGGGGAAAAAGGAGGCGGAGGAGGGGAGGGAGGAAGAATGATGATGGT
AGATGCTGGGGAGGGCGGGGAGCAGGAAGATGCAAGGAGGAGCTTGGTGG
GGATGAAGCATGAGAGGGGACAGAAGGAGGAGGAGCAAAAGGAGGAGGTT
GAAATAATGGATGAGAGTGAGGGATATAATGGTGGCGGAGGAGAAGAAGA
TTTTGCAAGAGGTTTTCATTTGCCCTCTTATAACCCCGCACCATCTGCGG
CTCTTGTTCAGCAGCAGCAGCAGCAGCAGCGGCAGTACGAACGGCAATAT
CAAGAGGAACAGCAGCAGCACTTTCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGAGCTACAACTTCAACAAGAGAGGC
AGTGCGTACCTGGCATACGGCTTAACATGGGTTGGGAGTCAGAAGAGGCT
CGTTTGCATGCCTTGGCGCTACTAGGGGGCACCGTGGTGAGTAGCACAAA
CAAGGAGGAGGAGGGGAAGGAAGAAGGAGAGGGGGAGGAAGAAAGCGAGG
AAAGGATGGAGGAAGGGGAGGAGGAGAGTGGACCTGTAGATATGTTTTCG
GGGTCGCCGATGGGAAAGGACCTATCAGCGCAGCAGCAGCAGCAGCAGCA
ACAACAACAACACAACATTTTCCAGCACCCTGGCAACTTTCCCTTGCGCA
GTTCCGATGGTGACAGGGAATGGGATGTAAGTAGCAGCAGCAGCATCAGC
AGCAGCCGACCCATCGGTATCCCTTATGTTGGTCAGGCGCACCTGAAGCA
GGAGCAGCAGCCCTTCACCACGTCCTCTTCCTCCGCTTCTTACGTTCCTG
GCTTTGGAGGAGCAGGAGGAGGAGGAGGAGGAAGAGGGGGAGGATTCACC
GGGCCATCGTCATTGGACTCGATGGTTGCTCAGCCGGACGAGGATGTGAC
GTACCGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGCGGGGG
GAAGGAGTAAGCTGGGTGGTGAGAACTTTGCGGCGTTGGCGCGAGGCTTT
GCTGGAAGCTGGGGAGGAGGGGGAGGAGGAGGAGGAGGACGAGGGGTAGA
AGGATATATGGATTCGGAGAGGGGAGGTGAAGCGGAGCAGGAAGAGGGGA
ATGAGGAGGATATGGATGATTTGGGGGCTTTGACCAGGGCTATCGCCGAT
GCGGGAGGAGGAGGAATAGGAAGAGGACGAGGCAGAAGAGGGGAAGGGGA
AGGGATAGGGGGACAAGGGACCCGTGAGGCGTTGCTTGCTCCTCCTCCTG
GATGTGTAGGGCCGAGTTTGACTGGGGAGAAGGAAGAGGAGGAGGATGAG
AGGGAAGGGGAGGGGAGAAGAGGAGGGGAGGGGTTTCTATTCGAAGGGGG
GGGAGGAGGGAGGGGGGAAACTCCGGCACACCATTTGTTGGATGAGGCGT
TGGAGGATGACGAGGCTCTTTGGTCGTAATAGTGGAAGTTTTGTCAGGGG
GAATGTTGTAAGCATGGAGGAAAAGGAGAAGAAAGGAGGATGGTGTGTAT
GCAGTAAGAGGTACATATGTGTGAGAGTAATGTGTGAATGGGCACTGTAT
CAAAGAAAGTGAACAATATAATATTTTAGA back to topCoding sequence (CDS) from alignment at chr6:1030325..1032704- >NO06G03730.1 ID=NO06G03730.1|Name=NO06G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=2229bp|location=Sequence derived from alignment at chr6:1030325..1032704- (Nannochloropsis oceanica) ATGGCGTACGCGGGCAGCGGCCCTCCAGGAATAGATGATGGTGGAGGAGG GGGCTTTCCAGTGCAGCACCGACAGCCTCGACGTTTTCCAGGACCGTTGG GCTTACTCGGCGCAACCATCGATGGTAGGGGCAGCAGATCGGACCCCGAA CAATACATGAAGCAGCAGCAGCAGCTGCACCAGCAGCCACCGCAGCAGGA AGGCCTTATCAAAGCGAGTTCCACAGCCATGAGTAGCAGTAACACTCCTG ATTTGGGCCTCCTCCATTTTCTCCAACCCAATGGGGCCTGGCAAAACATG TGCCGGGATTACGGCTTGCCCATCTCCTCCTCCTCCTCCTCGTCCTCCTC CCCCCCCTCCTCCTCCTCGTTCTCCGCATTGCCGTCGTCGTTATCACAGC AGCATGTCACCACCGCCCAAATCCTGCAACGAGTCCTCGGGTGCACTTGC TCGGAGGTCGCACAGGGCTGGCAAGACGAAACCCTGCGGGTGGGTCGAAA GCTTGCCGGAGTCGTGACCGCTGTGGATCACACGGCAGACGGGAGCGTCA GTTTCACCTTGGCAGATCCCACGGGAAAAGTACATGGTTATTTGCACACG GATGTGATTGAGGAGTACGGGCCTGATGTGGCAGTAGGGTGCGTGATGGT GTTGAGTGGAGTAGCTATCTTTGTGAGTGGCCCGGGGGTGCAGAGGTGGT TGAATGTCGTGCCTGAGAATGTGAGGGGCTTCTATCCAGCGGTAAGGCGA GGAGGGGAAAAAGGAGGCGGAGGAGGGGAGGGAGGAAGAATGATGATGGT AGATGCTGGGGAGGGCGGGGAGCAGGAAGATGCAAGGAGGAGCTTGGTGG GGATGAAGCATGAGAGGGGACAGAAGGAGGAGGAGCAAAAGGAGGAGGTT GAAATAATGGATGAGAGTGAGGGATATAATGGTGGCGGAGGAGAAGAAGA TTTTGCAAGAGGTTTTCATTTGCCCTCTTATAACCCCGCACCATCTGCGG CTCTTGTTCAGCAGCAGCAGCAGCAGCAGCGGCAGTACGAACGGCAATAT CAAGAGGAACAGCAGCAGCACTTTCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGGAGCTACAACTTCAACAAGAGAGGC AGTGCGTACCTGGCATACGGCTTAACATGGGTTGGGAGTCAGAAGAGGCT CGTTTGCATGCCTTGGCGCTACTAGGGGGCACCGTGGTGAGTAGCACAAA CAAGGAGGAGGAGGGGAAGGAAGAAGGAGAGGGGGAGGAAGAAAGCGAGG AAAGGATGGAGGAAGGGGAGGAGGAGAGTGGACCTGTAGATATGTTTTCG GGGTCGCCGATGGGAAAGGACCTATCAGCGCAGCAGCAGCAGCAGCAGCA ACAACAACAACACAACATTTTCCAGCACCCTGGCAACTTTCCCTTGCGCA GTTCCGATGGTGACAGGGAATGGGATGTAAGTAGCAGCAGCAGCATCAGC AGCAGCCGACCCATCGGTATCCCTTATGTTGGTCAGGCGCACCTGAAGCA GGAGCAGCAGCCCTTCACCACGTCCTCTTCCTCCGCTTCTTACGTTCCTG GCTTTGGAGGAGCAGGAGGAGGAGGAGGAGGAAGAGGGGGAGGATTCACC GGGCCATCGTCATTGGACTCGATGGTTGCTCAGCCGGACGAGGATGTGAC GTACCGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGCGGGGG GAAGGAGTAAGCTGGGTGGTGAGAACTTTGCGGCGTTGGCGCGAGGCTTT GCTGGAAGCTGGGGAGGAGGGGGAGGAGGAGGAGGAGGACGAGGGGTAGA AGGATATATGGATTCGGAGAGGGGAGGTGAAGCGGAGCAGGAAGAGGGGA ATGAGGAGGATATGGATGATTTGGGGGCTTTGACCAGGGCTATCGCCGAT GCGGGAGGAGGAGGAATAGGAAGAGGACGAGGCAGAAGAGGGGAAGGGGA AGGGATAGGGGGACAAGGGACCCGTGAGGCGTTGCTTGCTCCTCCTCCTG GATGTGTAGGGCCGAGTTTGACTGGGGAGAAGGAAGAGGAGGAGGATGAG AGGGAAGGGGAGGGGAGAAGAGGAGGGGAGGGGTTTCTATTCGAAGGGGG GGGAGGAGGGAGGGGGGAAACTCCGGCACACCATTTGTTGGATGAGGCGT TGGAGGATGACGAGGCTCTTTGGTCGTAA back to top
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