NO06G03620, NO06G03620 (gene) Nannochloropsis oceanica

Overview
NameNO06G03620
Unique NameNO06G03620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr6:991300..992253 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:991300..992253 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G03620 vs. NCBI_GenBank
Match: EWM26368.1 (hypothetical protein Naga_100031g4 [Nannochloropsis gaditana])

HSP 1 Score: 357.1 bits (915), Expect = 5.800e-95
Identity = 193/327 (59.02%), Postives = 230/327 (70.34%), Query Frame = 0
Query:    1 MADPFDGLFGDLPAA----------AKKEELNITNETQRQQKRPAPPHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIKPATLDLEEALDKITRALTSTKLEKSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTWDRLLGPAAEDRAQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAARNIKEYIVALQAIDDEQETYADKERRRAILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPEDEREELDEMSTRLRQTARGLSVNPTGTVISRSVRMVNSMATPFNTKKGDIYR 318
            M+DP DGLFGDLP+           A + E +   E + +QKR A   T                                  A  +P TL+L EAL KITRALTS KLEKSRKA+GLLTKL+T  +N ENA+QFHA + FFMA +G W+RLLGP AEDRA A  LL+ V+E ILLF P  QYRAA+WIL+GLLR E+LTDDTF FRRAAR I+EY+ AL+ +  E +T AD+ERR+AILACL TAL+ NFHSWAK SIE+LFKA  EKR+ FPE+EREELDEM+T+LR  ARGLSVNP+GTV+SRSVRMVNSMATPFNTKKGD++R
Sbjct:    1 MSDPLDGLFGDLPSTTREASSSQRPAPQHEQSKAQEQRLRQKRAA---TAPGSSVDNEQAKEMVHGPEAKRAREKEGCPSPPMAVSEPKTLELHEALQKITRALTSPKLEKSRKAMGLLTKLLTAEMNTENASQFHAALGFFMASEGVWERLLGPGAEDRALAHALLAAVRERILLFEPSAQYRAASWILVGLLRPELLTDDTFAFRRAARRIREYVTALEKL-REGDTLADRERRKAILACLRTALKQNFHSWAKASIEELFKATAEKRLCFPEEEREELDEMATKLRTEARGLSVNPSGTVVSRSVRMVNSMATPFNTKKGDVFR 323          
BLAST of NO06G03620 vs. NCBI_GenBank
Match: CBJ49222.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.4 bits (228), Expect = 2.700e-15
Identity = 83/270 (30.74%), Postives = 123/270 (45.56%), Query Frame = 0
Query:   77 KPATLDLEEALDKITRALTSTKLEKSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTWDRLLGPAA----EDRAQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAARNIKEYIVALQAI----------------------DDEQETYADKERRRAILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPE-DEREELDEMSTRLRQTARGLSVNPTGTVI--SRSVRMVNSMATPFNTKKGDIYR 318
            K  T+D+  +L K+   +   K  K+ KA  L+  LM  ++  ENA        FF A+    +   G AA    E  A+A + L+  +    +  P E  RA TW LL  LR +  TDD+F F RA + ++E I AL  +                                ER+ A++  +  A +    +WA+ SIE  FKAA ++R +FPE D R+ LD+ +  + +  R    NP G +   SRSVR  NS A P   K+ D+ R
Sbjct:  229 KTQTVDVAASLQKLKVFILKPK--KAAKAASLMADLMEAHLRPENARM------FFRALKPLAEEPAGEAALAAGEGGARAFRKLA-QRASEWVGAPSEGVRAVTWELLFGLRHDTKTDDSFTFARAIKRLREAIEALGGVTGGXXXXXXXXXXXXXXXXXXXXXGNRVSLSLERKTALILVMKEAFKSYHLAWARSSIEPAFKAAADRRRLFPEGDLRDTLDDFTDAITKRQR----NPGGLMAPPSRSVRAHNSTAHPMLNKRSDVIR 485          
BLAST of NO06G03620 vs. NCBI_GenBank
Match: CCI44152.1 (unnamed protein product [Albugo candida] >CCI42689.1 unnamed protein product [Albugo candida])

HSP 1 Score: 79.0 bits (193), Expect = 3.000e-11
Identity = 61/223 (27.35%), Postives = 108/223 (48.43%), Query Frame = 0
Query:   82 DLEEALDKITRALTSTKLEKSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTWDRLLGPAAEDRAQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAARNIKEYIVALQAIDDEQETYADKERRRAILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPEDEREELDEMSTRLRQTARGLSVNPTGTVISRSVRMVNSM 305
            DLE +L+K+ R + ST   +  KA  L  +LM  + + + A+QF A I  FM        LL   +   A    +  ++++   L    E  +   W L  +   ++LTDDT+ F RA + I+E +   + I ++     D      ++  L T ++ +  SWAK ++E +   AT KR  FPE +REELD  +  ++     + +    + + R+++  +SM
Sbjct:  103 DLEVSLNKLQRCMKST--SRFPKASELFCQLMDRHFDCDTASQFSACIDTFMT-----HELLAKWSGSLALNRLITRILRDENALHLTSESTK--NWTLAAITHYDLLTDDTYVFVRATKVIRERV---ENITEKSLRQDDDSELHLLMPILKTLVKKHTISWAKTAVESVVSVATSKRAYFPEKQREELDGWTACIQNRNNAVDIQRCSS-LRRNIKEQDSM 312          
BLAST of NO06G03620 vs. NCBI_GenBank
Match: CCA24706.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 68.2 bits (165), Expect = 5.400e-8
Identity = 53/192 (27.60%), Postives = 92/192 (47.92%), Query Frame = 0
Query:   82 DLEEALDKITRALTSTKLEKSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTWDRLLGPAAEDRAQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAARNIKEYIVALQAIDDEQETYADKERRRAILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPEDEREELDE 274
            DL+ +L K+ R + S    +  KA  L  +LM  ++NA   +QF A +  FM  D     L+   +   A     + ++K+   L    +   A  W    +   ++ TDDT+ F RA + I+E     + I ++     +K     +++ + T ++ +   WAK ++E +   AT KR  FPE +R+ELDE
Sbjct:   52 DLDFSLLKLQRCMKSP--SRFPKASELFCQLMDSHLNANTTSQFSACVHTFMTQD-----LVAKWSGSLALYKLTVRILKDKKSLH--VDAGVAKNWTFAAITHYDLHTDDTYVFARATKVIRE---RAENITEKSFYQGEKCELELLMSLIKTLVKKHSILWAKTAVESVVSVATSKRAYFPEKQRQELDE 231          
BLAST of NO06G03620 vs. NCBI_GenBank
Match: XP_008618244.1 (hypothetical protein SDRG_13921 [Saprolegnia diclina VS20] >EQC28374.1 hypothetical protein SDRG_13921 [Saprolegnia diclina VS20])

HSP 1 Score: 68.2 bits (165), Expect = 5.400e-8
Identity = 64/215 (29.77%), Postives = 99/215 (46.05%), Query Frame = 0
Query:   75 AIKPATLDLEEALDKITRALTSTKLEKSRKALGLLTKLMTGNINAENAAQFHATI---AFFMAVDGTWDRLLGPAAEDRAQAVQLLSLVKEHILLFGPEEQYRAAT---WILLGLLRSEMLTDDTFEFRRAARNIKEYIVALQAIDDEQETYADKE---RRRAILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPEDEREELDEMSTRLRQ 281
            A KPA LDL + +DKI   +   K  K  KA  L  KL+    +  + +    T    A    +D   DR+    A +  +A+ LL       LL  PE  Y A T   W+L  +L +++ TDDT+ F +A + +  +   L   D+  E+  D +     R +  CL T +  +  SWAK ++E +    T  R+ FPE  R E+D  +  + Q
Sbjct:   50 AAKPA-LDLFQTIDKIKGYMMVDK--KFAKASVLFGKLLVEECSVRSPSDEVMTALLDAIKDVMDAKADRIHHVDARNEFKALVLLVDAHRAALLTAPE--YEADTLDNWVLDAVLHNDLFTDDTYRFAKATKALASH---LDRRDEGVESKNDGDVDALDRVLFPCLRTLMARHTTSWAKTAVELVMHRLTATRLTFPEAYRNEIDLWTQTIHQ 256          
BLAST of NO06G03620 vs. NCBI_GenBank
Match: KOO26509.1 (hypothetical protein Ctob_006526 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 68.2 bits (165), Expect = 5.400e-8
Identity = 55/199 (27.64%), Postives = 91/199 (45.73%), Query Frame = 0
Query:   84 EEALDKITR-ALTSTKLEKSRKALGLLTKLM-TGNINAENAAQFHATI-AFFMAVDGTWDRLLGPAAEDRAQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAARNIKEYIVAL----QAIDDEQETYADKERRRA----ILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPEDEREEL 272
            +E +D   R A   T   K  K   +   L+  G +  ENA  F   + A  +      D+L       R    +L +       LF    Q     W LL L + ++ TDD+F+F +AA+ ++E +  L     A++    T+     RRA    +  CL  A+ H+ H+WA+P+ + L KAA ++R  + E+++ EL
Sbjct:   56 DEIIDGAPRLAAHITSASKFNKVAAMAFALLEAGRVTHENAPAFFTVLQAGLLEPRRLRDKLY------RVAYRKLYAAAISRASLFSASAQQELKRWQLLVLTQIDLHTDDSFQFNKAAKQVREKLEELPCIYPALEPAGVTHLPPSERRAWADVLFECLDAAMSHHKHAWARPTCDTLIKAAIDRRQNWVEEQQSEL 248          
BLAST of NO06G03620 vs. NCBI_GenBank
Match: XP_012197307.1 (hypothetical protein SPRG_03340 [Saprolegnia parasitica CBS 223.65] >KDO32123.1 hypothetical protein SPRG_03340 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 67.4 bits (163), Expect = 9.200e-8
Identity = 61/214 (28.50%), Postives = 101/214 (47.20%), Query Frame = 0
Query:   75 AIKPATLDLEEALDKITRALTSTKLEKSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTW----DRLLGPAAEDRAQAVQLLSLVKEHILLFGPEEQYRAAT---WILLGLLRSEMLTDDTFEFRRAARNIKEYIVAL-QAIDDEQETYADKERRRAILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPEDEREELDEMSTRLRQ 281
            A KPA LDL + +DKI   +   K  K  KA  L  KL+    +  + ++   T A   A+ G      DR+    A +  +A  L+ LV  H +      +Y A T   W+L  +L +++ TDDT+ F +A + +  ++    + +D + +   D    + +  CL T +  +  SWAK S+E +    T  R+ FPE  R E+D  +  + Q
Sbjct:   50 AAKPA-LDLFQTIDKIKGYMMVDK--KFAKASVLFGKLLVEECSVRSPSEDVMT-ALLDAIKGVMEAKADRIHHVDARNEFKA--LMMLVDSHRVALLEAPEYEADTIDNWVLDAVLHNDLFTDDTYRFAKATKALATHLDRRDEGVDSKNDGDVD-ALDKVLFPCLRTLMARHATSWAKTSVELVMHRLTATRLKFPEAYRNEIDLWTQTIHQ 256          
BLAST of NO06G03620 vs. NCBI_GenBank
Match: XP_004990147.1 (hypothetical protein PTSG_08763 [Salpingoeca rosetta] >EGD77671.1 hypothetical protein PTSG_08763 [Salpingoeca rosetta])

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-7
Identity = 60/223 (26.91%), Postives = 100/223 (44.84%), Query Frame = 0
Query:   78 PATLDLEEA------LDKITRALTSTKLEKSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTWDRLLGPAAEDRAQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAARNIKEYIVALQAIDDEQE-------------TYADK-ERRRAILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPEDEREELDEMSTRLRQ 281
            PA L+  EA      L K+   L   +  K  KA  +L KLM  ++  + + +F         +D    R  G  A   A    + SL   ++  F  +  ++  T +L  +    + TDDT++F +AA+   E I  L     +Q              T A+K ER  AI+  L+T  +H    WAK S++  FK A ++R++F +  RE +D+M   +++
Sbjct:   68 PAKLEATEAEKRKVLLKKLNTLLLDDR--KFPKAAPVLCKLMETDLRRDTSEEF---FPLLQKLDALASRRQGNPASMAAYR-DIFSLAHRNMDAFSDKHTFQLRTMVLYHVTCHRLNTDDTYQFAQAAKVAHEAIEQLDTAFPKQSDILLGMEITQYVPTDAEKRERLDAIVRVLSTLFQHRKKQWAKTSVDLAFKLAGDRRLIFDQVNRERIDDMYDSIKE 284          
BLAST of NO06G03620 vs. NCBI_GenBank
Match: OQR85396.1 (hypothetical protein ACHHYP_11884 [Achlya hypogyna])

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-7
Identity = 43/137 (31.39%), Postives = 66/137 (48.18%), Query Frame = 0
Query:  147 AEDRAQAVQLLSLVKEH--ILLFGPE-EQYRAATWILLGLLRSEMLTDDTFEFRRAARNIKEYIVALQAIDDEQETYADKERRRAILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPEDEREELDEMSTRLRQ 281
            A+ R     L  LV+ H   LL  PE E      W+L  +L +E+ TDD+F F +AA+ I  ++       +           +A+  CL T +  +  SWAK S+E +    T  RM FPE+ R E+D  + ++ Q
Sbjct:  120 ADARHDFKSLFDLVQTHRAALLTAPEYEDDTLDNWVLTSVLHNELFTDDSFGFAKAAKAISTHLDRRSHGVENANELDVAGLDKALFPCLRTLMTRHSTSWAKTSVELVMNRLTATRMSFPEELRAEIDSWTQQIHQ 256          
BLAST of NO06G03620 vs. NCBI_GenBank
Match: XP_005785283.1 (hypothetical protein EMIHUDRAFT_364188 [Emiliania huxleyi CCMP1516] >EOD32854.1 hypothetical protein EMIHUDRAFT_364188 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 65.1 bits (157), Expect = 4.500e-7
Identity = 56/200 (28.00%), Postives = 92/200 (46.00%), Query Frame = 0
Query:   82 DLEEALDKITRALTSTKLEKSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTWDRLLGPAAEDRAQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAARNIKEYIVALQAIDDEQET-----YADKERRR---AILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPEDEREELDE 274
            ++  A  ++ + + S K + +R A  L + L +G +NAENA+ F + +A      G        A E R    +L         LFG EE+     W L  L++ ++ TDDTF+F  + R +   +  L       E        + ER R   AI  C+  A   + H+WA+ S++ L KAA E+R  F   +++ L +
Sbjct:  131 EITSAAPRLAQHICSPK-KFNRVAAMLYSLLESGRVNAENASAFFSVLA-----AGVSTPRACRARELRVAYRRLYLSASLKESLFGAEERAMIDVWRLRVLVQIDLCTDDTFQFAGSVRKVIAKLEQLPCFYPALEPAGAVHLPEAERGRWIDAIFDCVDAAFEQHKHAWARSSVDLLVKAAVERRQNFSAPQQQVLQQ 324          
The following BLAST results are available for this feature:
BLAST of NO06G03620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM26368.15.800e-9559.02hypothetical protein Naga_100031g4 [Nannochloropsi... [more]
CBJ49222.12.700e-1530.74expressed unknown protein [Ectocarpus siliculosus][more]
CCI44152.13.000e-1127.35unnamed protein product [Albugo candida] >CCI42689... [more]
CCA24706.15.400e-827.60conserved hypothetical protein [Albugo laibachii N... [more]
XP_008618244.15.400e-829.77hypothetical protein SDRG_13921 [Saprolegnia dicli... [more]
KOO26509.15.400e-827.64hypothetical protein Ctob_006526 [Chrysochromulina... [more]
XP_012197307.19.200e-828.50hypothetical protein SPRG_03340 [Saprolegnia paras... [more]
XP_004990147.11.200e-726.91hypothetical protein PTSG_08763 [Salpingoeca roset... [more]
OQR85396.11.200e-731.39hypothetical protein ACHHYP_11884 [Achlya hypogyna... [more]
XP_005785283.14.500e-728.00hypothetical protein EMIHUDRAFT_364188 [Emiliania ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000118NSK000118Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03620.1NO06G03620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632091gene_6687Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03620.1NO06G03620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03620 ID=NO06G03620|Name=NO06G03620|organism=Nannochloropsis oceanica|type=gene|length=954bp
ATGGCGGATCCTTTTGATGGTCTCTTTGGTGACCTGCCGGCAGCGGCCAA
GAAGGAGGAGCTTAATATCACGAACGAGACACAACGGCAGCAGAAGCGAC
CCGCTCCCCCCCACACCGACAAAGATCAGAAGAAGCCGCAAGAAAAGGAC
GGTAGCCCTACCAGCACCAAGAAACGTGCACGACAAGAGAACCAGGATGA
CAATGGCAAAACGACAGCCGCTGCCATCAAGCCGGCCACGTTAGACCTCG
AAGAAGCCCTTGATAAAATCACACGCGCTTTGACCTCGACCAAGCTGGAA
AAGAGTCGGAAGGCACTGGGCTTGCTGACCAAGTTAATGACAGGAAATAT
CAATGCAGAAAACGCTGCACAATTTCATGCGACCATCGCATTTTTTATGG
CGGTCGATGGCACGTGGGACCGGTTACTAGGGCCCGCAGCCGAGGACAGG
GCGCAGGCTGTCCAGCTCTTGTCGTTGGTTAAGGAGCACATCCTCCTTTT
TGGTCCGGAAGAACAATATCGCGCAGCAACATGGATTTTGCTAGGATTAC
TGCGGTCGGAGATGTTGACGGATGATACCTTTGAGTTCCGCCGCGCGGCG
CGGAATATCAAGGAGTACATTGTTGCGTTGCAAGCGATAGACGACGAACA
AGAGACTTACGCAGATAAGGAACGAAGGAGAGCCATTCTCGCTTGTCTCG
CCACAGCCCTTCGGCATAACTTCCACTCGTGGGCTAAGCCTTCGATTGAA
GATTTATTCAAAGCCGCAACGGAGAAACGTATGGTTTTCCCCGAGGATGA
GAGGGAGGAGTTGGATGAGATGAGTACAAGATTGAGGCAAACCGCGAGGG
GGTTGAGTGTCAACCCGACGGGTACGGTGATCTCGAGGAGTGTGCGGATG
GTGAATAGCATGGCCACCCCGTTCAACACGAAGAAGGGGGATATATATAG
ATGA
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protein sequence of NO06G03620.1

>NO06G03620.1-protein ID=NO06G03620.1-protein|Name=NO06G03620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MADPFDGLFGDLPAAAKKEELNITNETQRQQKRPAPPHTDKDQKKPQEKD
GSPTSTKKRARQENQDDNGKTTAAAIKPATLDLEEALDKITRALTSTKLE
KSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTWDRLLGPAAEDR
AQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAA
RNIKEYIVALQAIDDEQETYADKERRRAILACLATALRHNFHSWAKPSIE
DLFKAATEKRMVFPEDEREELDEMSTRLRQTARGLSVNPTGTVISRSVRM
VNSMATPFNTKKGDIYR*
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Synonyms
Publications