NO06G03620.1, NO06G03620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03620.1
Unique NameNO06G03620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr6:991300..992253 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:991300..992253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G03620.1 vs.
Match: EWM26368.1 (hypothetical protein Naga_100031g4 [Nannochloropsis gaditana])

HSP 1 Score: 359.4 bits (921), Expect = 1.200e-95
Identity = 196/328 (59.76%), Postives = 243/328 (74.09%), Query Frame = 0 
Query:    1 MADPFDGLFGDLPAAAKK-----------EELNITNETQRQQKRPAPPHTDKDQKKPQEKDGSPTSTKKRARQENQDDNGKTTAAAIKPATLDLEEALDKITRALTSTKLEKSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTWDRLLGPAAEDRAQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAARNIKEYIVALQAIDDEQETYADKERRRAILACLATALRHNFHSWAKPSIEDLFKAATEKRMVFPEDEREELDEMSTRLRQTARGLSVNPTGTVISRSVRMVNSMATPFNTKKGDIYR 318
            M+DP DGLFGDLP+  ++           E+     +  RQ++    P +  D ++ +E    P +  KRAR++  +       A  +P TL+L EAL KITRALTS KLEKSRKA+GLLTKL+T  +N ENA+QFHA + FFMA +G W+RLLGP AEDRA A  LL+ V+E ILLF P  QYRAA+WIL+GLLR E+LTDDTF FRRAAR I+EY+ AL+ +  E +T AD+ERR+AILACL TAL+ NFHSWAK SIE+LFKA  EKR+ FPE+EREELDEM+T+LR  ARGLSVNP+GTV+SRSVRMVNSMATPFNTKKGD++R
Sbjct:    1 MSDPLDGLFGDLPSTTREASSSQRPAPQHEQSKAQEQRLRQKRAATAPGSSVDNEQAKEMVHGPEA--KRAREK--EGCPSPPMAVSEPKTLELHEALQKITRALTSPKLEKSRKAMGLLTKLLTAEMNTENASQFHAALGFFMASEGVWERLLGPGAEDRALAHALLAAVRERILLFEPSAQYRAASWILVGLLRPELLTDDTFAFRRAARRIREYVTALEKL-REGDTLADRERRKAILACLRTALKQNFHSWAKASIEELFKATAEKRLCFPEEEREELDEMATKLRTEARGLSVNPSGTVVSRSVRMVNSMATPFNTKKGDVFR 323
The following BLAST results are available for this feature:
BLAST of NO06G03620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26368.11.200e-9559.76hypothetical protein Naga_100031g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03620NO06G03620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03620.1NO06G03620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03620.1.cds1NO06G03620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03620.1 ID=NO06G03620.1|Name=NO06G03620.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATGGCGGATCCTTTTGATGGTCTCTTTGGTGACCTGCCGGCAGCGGCCAA
GAAGGAGGAGCTTAATATCACGAACGAGACACAACGGCAGCAGAAGCGAC
CCGCTCCCCCCCACACCGACAAAGATCAGAAGAAGCCGCAAGAAAAGGAC
GGTAGCCCTACCAGCACCAAGAAACGTGCACGACAAGAGAACCAGGATGA
CAATGGCAAAACGACAGCCGCTGCCATCAAGCCGGCCACGTTAGACCTCG
AAGAAGCCCTTGATAAAATCACACGCGCTTTGACCTCGACCAAGCTGGAA
AAGAGTCGGAAGGCACTGGGCTTGCTGACCAAGTTAATGACAGGAAATAT
CAATGCAGAAAACGCTGCACAATTTCATGCGACCATCGCATTTTTTATGG
CGGTCGATGGCACGTGGGACCGGTTACTAGGGCCCGCAGCCGAGGACAGG
GCGCAGGCTGTCCAGCTCTTGTCGTTGGTTAAGGAGCACATCCTCCTTTT
TGGTCCGGAAGAACAATATCGCGCAGCAACATGGATTTTGCTAGGATTAC
TGCGGTCGGAGATGTTGACGGATGATACCTTTGAGTTCCGCCGCGCGGCG
CGGAATATCAAGGAGTACATTGTTGCGTTGCAAGCGATAGACGACGAACA
AGAGACTTACGCAGATAAGGAACGAAGGAGAGCCATTCTCGCTTGTCTCG
CCACAGCCCTTCGGCATAACTTCCACTCGTGGGCTAAGCCTTCGATTGAA
GATTTATTCAAAGCCGCAACGGAGAAACGTATGGTTTTCCCCGAGGATGA
GAGGGAGGAGTTGGATGAGATGAGTACAAGATTGAGGCAAACCGCGAGGG
GGTTGAGTGTCAACCCGACGGGTACGGTGATCTCGAGGAGTGTGCGGATG
GTGAATAGCATGGCCACCCCGTTCAACACGAAGAAGGGGGATATATATAG
ATGA
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protein sequence of NO06G03620.1

>NO06G03620.1-protein ID=NO06G03620.1-protein|Name=NO06G03620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MADPFDGLFGDLPAAAKKEELNITNETQRQQKRPAPPHTDKDQKKPQEKD
GSPTSTKKRARQENQDDNGKTTAAAIKPATLDLEEALDKITRALTSTKLE
KSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTWDRLLGPAAEDR
AQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAA
RNIKEYIVALQAIDDEQETYADKERRRAILACLATALRHNFHSWAKPSIE
DLFKAATEKRMVFPEDEREELDEMSTRLRQTARGLSVNPTGTVISRSVRM
VNSMATPFNTKKGDIYR*
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mRNA from alignment at chr6:991300..992253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03620.1 ID=NO06G03620.1|Name=NO06G03620.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at chr6:991300..992253- (Nannochloropsis oceanica)
ATGGCGGATCCTTTTGATGGTCTCTTTGGTGACCTGCCGGCAGCGGCCAA
GAAGGAGGAGCTTAATATCACGAACGAGACACAACGGCAGCAGAAGCGAC
CCGCTCCCCCCCACACCGACAAAGATCAGAAGAAGCCGCAAGAAAAGGAC
GGTAGCCCTACCAGCACCAAGAAACGTGCACGACAAGAGAACCAGGATGA
CAATGGCAAAACGACAGCCGCTGCCATCAAGCCGGCCACGTTAGACCTCG
AAGAAGCCCTTGATAAAATCACACGCGCTTTGACCTCGACCAAGCTGGAA
AAGAGTCGGAAGGCACTGGGCTTGCTGACCAAGTTAATGACAGGAAATAT
CAATGCAGAAAACGCTGCACAATTTCATGCGACCATCGCATTTTTTATGG
CGGTCGATGGCACGTGGGACCGGTTACTAGGGCCCGCAGCCGAGGACAGG
GCGCAGGCTGTCCAGCTCTTGTCGTTGGTTAAGGAGCACATCCTCCTTTT
TGGTCCGGAAGAACAATATCGCGCAGCAACATGGATTTTGCTAGGATTAC
TGCGGTCGGAGATGTTGACGGATGATACCTTTGAGTTCCGCCGCGCGGCG
CGGAATATCAAGGAGTACATTGTTGCGTTGCAAGCGATAGACGACGAACA
AGAGACTTACGCAGATAAGGAACGAAGGAGAGCCATTCTCGCTTGTCTCG
CCACAGCCCTTCGGCATAACTTCCACTCGTGGGCTAAGCCTTCGATTGAA
GATTTATTCAAAGCCGCAACGGAGAAACGTATGGTTTTCCCCGAGGATGA
GAGGGAGGAGTTGGATGAGATGAGTACAAGATTGAGGCAAACCGCGAGGG
GGTTGAGTGTCAACCCGACGGGTACGGTGATCTCGAGGAGTGTGCGGATG
GTGAATAGCATGGCCACCCCGTTCAACACGAAGAAGGGGGATATATATAG
ATGA
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Coding sequence (CDS) from alignment at chr6:991300..992253-

>NO06G03620.1 ID=NO06G03620.1|Name=NO06G03620.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr6:991300..992253- (Nannochloropsis oceanica)
ATGGCGGATCCTTTTGATGGTCTCTTTGGTGACCTGCCGGCAGCGGCCAA
GAAGGAGGAGCTTAATATCACGAACGAGACACAACGGCAGCAGAAGCGAC
CCGCTCCCCCCCACACCGACAAAGATCAGAAGAAGCCGCAAGAAAAGGAC
GGTAGCCCTACCAGCACCAAGAAACGTGCACGACAAGAGAACCAGGATGA
CAATGGCAAAACGACAGCCGCTGCCATCAAGCCGGCCACGTTAGACCTCG
AAGAAGCCCTTGATAAAATCACACGCGCTTTGACCTCGACCAAGCTGGAA
AAGAGTCGGAAGGCACTGGGCTTGCTGACCAAGTTAATGACAGGAAATAT
CAATGCAGAAAACGCTGCACAATTTCATGCGACCATCGCATTTTTTATGG
CGGTCGATGGCACGTGGGACCGGTTACTAGGGCCCGCAGCCGAGGACAGG
GCGCAGGCTGTCCAGCTCTTGTCGTTGGTTAAGGAGCACATCCTCCTTTT
TGGTCCGGAAGAACAATATCGCGCAGCAACATGGATTTTGCTAGGATTAC
TGCGGTCGGAGATGTTGACGGATGATACCTTTGAGTTCCGCCGCGCGGCG
CGGAATATCAAGGAGTACATTGTTGCGTTGCAAGCGATAGACGACGAACA
AGAGACTTACGCAGATAAGGAACGAAGGAGAGCCATTCTCGCTTGTCTCG
CCACAGCCCTTCGGCATAACTTCCACTCGTGGGCTAAGCCTTCGATTGAA
GATTTATTCAAAGCCGCAACGGAGAAACGTATGGTTTTCCCCGAGGATGA
GAGGGAGGAGTTGGATGAGATGAGTACAAGATTGAGGCAAACCGCGAGGG
GGTTGAGTGTCAACCCGACGGGTACGGTGATCTCGAGGAGTGTGCGGATG
GTGAATAGCATGGCCACCCCGTTCAACACGAAGAAGGGGGATATATATAG
ATGA
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Synonyms
Publications