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Properties
| Property Name | Value |
|---|
| Description | High mobility group protein tdp-1 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr6 | genome | chr6:957889..962309 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Homology
BLAST of NO06G03470 vs. NCBI_GenBank
Match: EWM26326.1 (high mobility group protein tdp-1 [Nannochloropsis gaditana]) HSP 1 Score: 119.8 bits (299), Expect = 1.900e-23 Identity = 132/236 (55.93%), Postives = 157/236 (66.53%), Query Frame = 0
Query: 86 MPKRAADA--DLVQPKGAMNAYMHFATNPTIKERAKAKLPTGASIKDITSKCGQMWREMSDEDKKPWTIRAEADKARHAKEMEVFVKAGGMKKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAARDLTKPVAPGNAFDLFVKGESESESRKDEFKKMLKKDVRAMMKKEWDEMDEEEHKVWKDAAKTANEEYKIALEAWQCKQGPPAVVPVS 320
M KRA+ A +LVQPKG NAYM F+ +P KER K LP + KDI SKCG+MWR M+D+DK+P+ +AE DKAR KEM+ F+KAGG KK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TKP A AF+ F+ E+E ++ K E K +K+ + +KK+WDEMDE + K W AA E K AL A K P P +
Sbjct: 1 MAKRASSAATELVQPKGPCNAYMWFSNDPKTKERVKETLPKEHTNKDILSKCGEMWRTMNDQDKEPYAAQAEKDKARFEKEMDAFIKAGGSKK-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKPKALDFAFEHFM--EAELKAEKPELKGKSEKEKQIFLKKKWDEMDESQKKGWTSAA--PGSENKDALVAKGAKGVPMPASPAT 225
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G03470 ID=NO06G03470|Name=NO06G03470|organism=Nannochloropsis oceanica|type=gene|length=4421bp
GCAGCTGGAGCAGCTGGAGCAGCTGGAGCAGCTGGAGAAGCTGGAGTAGC
TGGAGCAGCTGGAGAAGCTGGAGTAGCAGGCTTACCAGGTACCTCGTCCT
TGGACACAGTCTTGCAGGCGATGCGTGTCGTCATGGTGGCCATGGGTATC
AGCACGGAGATGAAATTGGGGATGATTTGTGCACGCAAGGAGCCTTCGGC
CTTAATTGCAGTGGTCATACCATTAAGAGTGCAGTCATCGGCAATATCGC
GGACTTCCGGGAGGTTTGTGTGGATCTCGGCGTGGAGTTGGAACACCTGG
GAGGAAGAGAGGGAGGGAGGGAAGAAGGGTCACTACAAAAAAAGGTTGAC
GTCCCTTCCTGTCCTTTTCTATTCCTTTTCCTTGTACCTTGGATCCACGG
GCGGGAATATTGACGATCCTTTCGTGCATGGCGGTACCGATATTGTGGTC
TTGAAAGTCTGGAAAAAAGGGGGGAAGGACGGGGAAAGGAGGGGGGAAGG
AGGAGCTGGTCAGAATCATTGGCGTCAGCTGACGGACAAATGAAAACACA
CACACACGAGACAGCCTCAAAACATGTGTGCAGGTACGGCAGGTACTAGA
AGCCGGGATTTCAGACTCCCTAAAATGCATGAGGCCTAAGATTGTTGTGT
GAGCAAAAATAGAAACAGACCACCCCCAACCCCTTTCAGAGACTTTCTTG
GCTCTACATCCACCCGACATTGTTTGGTAACGCACCCTTTAATTGCAGAG
CCACGTCGCTGAATAATAGGCGATAGTTGTTGGGGTTGACGACCTTCACA
CCGATGTCCTGTAGGGAAGAAGGCGAGCGGGAAAAATGGAGAGGGGAGAA
TTTATGCCTAGGCTTTGGAGTGCTTGGTAGCATGCAAGCATGCCGCCCCG
CCGGCGGACATGGCTTCAATGACATTTTTTCACACCGTTTTGTAAACAAT
TATTCACTCTCCTGCGTGATGTAAAGCTTCTGTATTCTACACTTTTAAAC
AAAAACAAAAACAAAAAACTGACCCTTCCTGACCTCCCTTCCTACCCCTC
CCCTCCCTTCCCTCCTTTCCCTCCTCCAATGACGTACCAAATCAAAATCC
GTCGGCACAGACTGACCATCTATGGCGGGTAAACGAAAGGATGATCCACC
TTTCTCGTACACCACCGTCGGCATGTCAAACCAAATCACATGCTTGGCGA
CCAAAATGCCCACTACAATCAGGGTGACCGCCAGAAGGGCAAGCGTCCAG
CCTAAGCACCGGCAACATCGCGACTCACGAAAGGGTGTGACGGGAAACGT
GGAGATATCGGTATCCCACGATTCTTTGGTGCGGGGCTCTGACTCTGTCG
CGTCGTAAGACGAAGACTCGTAGGAAGACGAGTCCTCATCGCTTCCGCTG
CTGTCGCCTGAGGAGGAGGAGGAGGACGACGACGACGACGACGAGGACGA
GGACGAGGGGGATTCTGGCTGTGCTTGCTCCAAGTCTTGGGGCCTCTCCA
AGGGTGAGACCAAGGCGAGTGCCATGGTGCTGTGTCTTTGTTGTGTGGAT
GTGGATAGGGAACAAAGTGGGTGACGGGAGTTCCAAATAAATCAGAGTCC
CTCTCGCCCCTGGCGGTCGGACAGTGATTGGACAGAGAGTTTGAGACTGG
TGCTGCCACTAGGACCAACAGAGACAGCGTGCTCCATCAATTGATGCCTA
AAGAATGTCAAGGGTGCCTCTTGTCTCCGCATCCAAGCGAAAACTTCGGA
TGCTACCCGTACACGGAAAGCGACGCACGACCTGGGGAAGAAAAGCAAGG
CCGACGAGAGGCGGCAGGGATCCCGGCAGGGATGCAGAGTCGATGGGCGG
GTTTAGGGTGACATCAAGTATTGACCAAAGGGCGTAGGCATGGCCATTCT
CATTTCTGTATTTGTGTGCCACTGTCCCATTGGTTTGTCTTTGAGTGTGG
TTCCAAGTAATGTCACGTGAAAAGAAAGCGACGCGTCCGGCGCGCGGCGC
GAGAGCACAGCACATAGGAAAAAGGAACTAGAACTAAGTTCCTCAACCTT
CTGGTCTGATATGCTATGTTTGATAGAAGCATCAATTTGCAGATCCGCAT
GTTTAGAGTTTTTAGACTTACTCCATGCTGCACACGCTCTACCGCTTAGC
CATCTCGACGGCCTGCAATGTAAGCACGAGTGTACCTTTTGTGTGGGGGT
TGTCGTCGGTTGTTCTCCTGTAACTACGCTCCAATAAGCAAAGCACTGCG
CTTCCTTCCCTCTAGGCCAATCCTTCGCTACCCAGACCCAATATACACAT
ACTCATGCTCATAAATATGCACATGCACACATGTCTCCTGGCATTTCCCG
TGCCCTTCCACACTTCCACAGCACCGGGAGTGTGTCTGCGTTTTCCCCGC
CTTGTTCGATTTTCTCAAAACATTAGCAGGATATACGCACCAAGCCTCGT
TTGTAACCCTCCTATTCATCTCAACCCCTTTTCTGTCCTTTCCCTCACAT
GCATCACCATTACAAAACGGCTCCGCCGCTCCCCGAGTCACCAATCCCAA
GCAACAAACATGCCCAAACGCGCTGCTGACGCGGACTTGGTCCAACCCAA
GGGCGCCATGAATGCCTACATGCACTTCGCCACAAACCCCACCATTAAGG
AGAGAGCCAAAGCAAAGCTTCCTACGGGAGCTTCGgtacgtatacatggt
aggaatgaaaggagatggcatggaaggaagagcgatgtgaagggaaggta
cggccatgatggcattggaagacgggtgacaccacaccctccacatgccc
tcttcttcccttgcccttaaccccccaaatccacccatagATCAAGGACA
TCACCTCCAAATGCGGGCAGATGTGGCGAGAGATGTCGGATGAGGACAAG
AAGgtacgcgctcgtgcctgaccttcttttctctcatcctcctttgtatt
gccaaacccgcccacctcgtcttccctccctctcccgcatttctaacaat
tgtttggcatgaacctcatattctgtgtctcctcttcgctccagCCGTGG
ACCATCCGCGCGGAGGCCGACAAGGCCCGGCACGCCAAGGAGATGGAAGT
CTTCGTCAAGGCGGGCGGGATGAAGAAGGAGCGGAAGAGCAAGAAGAGCA
AGGCCAACCCTGCCAAGACTTCTATCAAAGGAAACGGTGGGAAGGGAGGG
AATAAGAAGGAAGGGAAGGGGAAGGGGAGGGGGAAAGGGAAAGTGACTGC
GGTGGCGAAATCTTCAAAAAAAAAGATGAAGGAGAGGGCAGCCCGGGACC
TGACCAAGCCTGTGGCGCCCGGGAATGCTTTTGATCTCTTCGTGAAAGGC
GAGTCCGAATCCGAGAGTCGGAAGGATGAATTTAAGAAGATGCTGAAGAA
GGACGTCCGGGCGATGATGAAGAAGGAGTGGGACGAGATGGATGAGGAGG
AGCATAAAGgtaattagggggggaggagaggatccacacccttacccact
caatcatccccattctatccatttaccccctcctttccacttcatcagTG
TGGAAGGATGCCGCCAAGACCGCCAACGAAGAGTACAAGATCGCTCTCGA
GGCCTGGCAATGCAAGCAAGGTCCTCCTGCCGTCGTTCCTGTTTCCCCCG
CAACAACCACTCGTGCGGCAGAGGGAGGCAAGGACGAGGGAGGGGAGGAA
GAGGAAGATGATGAAATTGAGATGGAGGAGGAGGAGGAGGGGAAGGAGGA
GGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGG
GAGGCAAGGAAAAAGAGGTGGATACGTAAGGGGTGACAGTTGTTAGGCAT
TTCATGATACGTGTCTGACACCAGCAATAATAGTTTGGTGTGATGAGAAC
AGAGGAAAAGAGAGTGCGTGCGCGCCATGCGTGAGTGAGTAGGAAAGAGA
GAAGGTAAGAGGAGCTGCGACGAATCAGGAAGAGGGAGGGAGGGGATCTT
TGCGCTGGACTTTGAAAGTTTTTCGGAAGAATCTTCGAAGCGGTCATTAC
CCCAAGAATACGCAGGAGCAGGATATATATATATAGAGAGAGAGAGGCAA
GACGAGCGTGAGCCAATGTGAAAGAGAGTGATCTGTGTGAGAGAGAGGTA
CAGCAAGAGGCGGGCGGGGAAGGGAGAACCGCATGCCGTCATTTTGTGGT
GTCAATTAGTTCATTTGTTCATGGGATTATACGTACAGTCACGTGTGACA
GCAGCAGCAGCTACTGCTGCAGGAGAAGTGATTGTAGAAAACGAGAGAGG
GGCGAGGGAAAGGTGCTGAAAGCGGCCAGACTTCGCAAGCACTAGTCTCT
CTCAACATCACGATCAGAAACAGAAATGGAGGCAAGAGCTTCTCAGGAAG
CCAACTAATCCACAATGGTGA back to topprotein sequence of NO06G03470.2 >NO06G03470.2-protein ID=NO06G03470.2-protein|Name=NO06G03470.2|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MWREMSDEDKKPWTIRAEADKARHAKEMEVFVKAGGMKKERKSKKSKANP
AKTSIKGNGGKGGNKKEGKGKGRGKGKVTAVAKSSKKKMKERAARDLTKP
VAPGNAFDLFVKGESESESRKDEFKKMLKKDVRAMMKKEWDEMDEEEHKV
WKDAAKTANEEYKIALEAWQCKQGPPAVVPVSPATTTRAAEGGKDEGGEE
EEDDEIEMEEEEEGKEEEEEEVEEEEEEEVEEEGGKEKEVDT* back to topprotein sequence of NO06G03470.1 >NO06G03470.1-protein ID=NO06G03470.1-protein|Name=NO06G03470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MLINMHMHTCLLAFPVPFHTSTAPGVCLRFPRLVRFSQNISRIYAPSLVC
NPPIHLNPFSVLSLTCITITKRLRRSPSHQSQATNMPKRAADADLVQPKG
AMNAYMHFATNPTIKERAKAKLPTGASIKDITSKCGQMWREMSDEDKKPW
TIRAEADKARHAKEMEVFVKAGGMKKERKSKKSKANPAKTSIKGNGGKGG
NKKEGKGKGRGKGKVTAVAKSSKKKMKERAARDLTKPVAPGNAFDLFVKG
ESESESRKDEFKKMLKKDVRAMMKKEWDEMDEEEHKVWKDAAKTANEEYK
IALEAWQCKQGPPAVVPVSPATTTRAAEGGKDEGGEEEEDDEIEMEEEEE
GKEEEEEEVEEEEEEEVEEEGGKEKEVDT* back to top
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