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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:957889..962309 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03470.2 vs.
Match: EWM26326.1 (high mobility group protein tdp-1 [Nannochloropsis gaditana]) HSP 1 Score: 85.1 bits (209), Expect = 3.200e-13 Identity = 93/228 (40.79%), Postives = 127/228 (55.70%), Query Frame = 0
Query: 1 MWREMSDEDKKPWTIRAEADKARHAKEMEVFVKAGGMKKERK--SKKSKANPAKTSIKGNGGKGGNKKEGKGKGRGKGKVTAVAKSSKKKMKERAARDLTKPVAPGNAFDLFVKGESESESRKDEFKKMLKKDVRAMMKKEWDEMDEEEHKVWKDAAKTANEEYKIALEAWQCKQGPPAVVPVSPATTTRAAEGGKDE----GGEEEEDDEIEMEEEE-EGKEEEEEE 222
MWR M+D+DK+P+ +AE DKAR KEM+ F+KAGG KK RK S SK AK S+ KK+ K +G+G+ ++ K + TKP A AF+ F++ E ++E K E K +K+ + +KK+WDEMDE + K W AA E K AL A K P +P SPATT + EG ++E G+E+ +DEIEMEEE EG E E+
Sbjct: 55 MWRTMNDQDKEPYAAQAEKDKARFEKEMDAFIKAGGSKKARKGGSGGSKGKTAKPSLPSRTTISDTKKQEKKEGKGE---------EAREKKGNGGQGATKPKALDFAFEHFMEAELKAE--KPELKGKSEKEKQIFLKKKWDEMDESQKKGWTSAAP--GSENKDALVAKGAKGVP---MPASPATTAQP-EGSEEEVEKERGKEDGEDEIEMEEEAGEGAGNETED 265
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03470.2 ID=NO06G03470.2|Name=NO06G03470.2|organism=Nannochloropsis oceanica|type=mRNA|length=4191bp GCAGCTGGAGCAGCTGGAGCAGCTGGAGCAGCTGGAGAAGCTGGAGTAGC TGGAGCAGCTGGAGAAGCTGGAGTAGCAGGCTTACCAGGTACCTCGTCCT TGGACACAGTCTTGCAGGCGATGCGTGTCGTCATGGTGGCCATGGGTATC AGCACGGAGATGAAATTGGGGATGATTTGTGCACGCAAGGAGCCTTCGGC CTTAATTGCAGTGGTCATACCATTAAGAGTGCAGTCATCGGCAATATCGC GGACTTCCGGGAGGTTTGTGTGGATCTCGGCGTGGAGTTGGAACACCTGG GAGGAAGAGAGGGAGGGAGGGAAGAAGGGTCACTACAAAAAAAGGTTGAC GTCCCTTCCTGTCCTTTTCTATTCCTTTTCCTTGTACCTTGGATCCACGG GCGGGAATATTGACGATCCTTTCGTGCATGGCGGTACCGATATTGTGGTC TTGAAAGTCTGGAAAAAAGGGGGGAAGGACGGGGAAAGGAGGGGGGAAGG AGGAGCTGGTCAGAATCATTGGCGTCAGCTGACGGACAAATGAAAACACA CACACACGAGACAGCCTCAAAACATGTGTGCAGGTACGGCAGGTACTAGA AGCCGGGATTTCAGACTCCCTAAAATGCATGAGGCCTAAGATTGTTGTGT GAGCAAAAATAGAAACAGACCACCCCCAACCCCTTTCAGAGACTTTCTTG GCTCTACATCCACCCGACATTGTTTGGTAACGCACCCTTTAATTGCAGAG CCACGTCGCTGAATAATAGGCGATAGTTGTTGGGGTTGACGACCTTCACA CCGATGTCCTGTAGGGAAGAAGGCGAGCGGGAAAAATGGAGAGGGGAGAA TTTATGCCTAGGCTTTGGAGTGCTTGGTAGCATGCAAGCATGCCGCCCCG CCGGCGGACATGGCTTCAATGACATTTTTTCACACCGTTTTGTAAACAAT TATTCACTCTCCTGCGTGATGTAAAGCTTCTGTATTCTACACTTTTAAAC AAAAACAAAAACAAAAAACTGACCCTTCCTGACCTCCCTTCCTACCCCTC CCCTCCCTTCCCTCCTTTCCCTCCTCCAATGACGTACCAAATCAAAATCC GTCGGCACAGACTGACCATCTATGGCGGGTAAACGAAAGGATGATCCACC TTTCTCGTACACCACCGTCGGCATGTCAAACCAAATCACATGCTTGGCGA CCAAAATGCCCACTACAATCAGGGTGACCGCCAGAAGGGCAAGCGTCCAG CCTAAGCACCGGCAACATCGCGACTCACGAAAGGGTGTGACGGGAAACGT GGAGATATCGGTATCCCACGATTCTTTGGTGCGGGGCTCTGACTCTGTCG CGTCGTAAGACGAAGACTCGTAGGAAGACGAGTCCTCATCGCTTCCGCTG CTGTCGCCTGAGGAGGAGGAGGAGGACGACGACGACGACGACGAGGACGA GGACGAGGGGGATTCTGGCTGTGCTTGCTCCAAGTCTTGGGGCCTCTCCA AGGGTGAGACCAAGGCGAGTGCCATGGTGCTGTGTCTTTGTTGTGTGGAT GTGGATAGGGAACAAAGTGGGTGACGGGAGTTCCAAATAAATCAGAGTCC CTCTCGCCCCTGGCGGTCGGACAGTGATTGGACAGAGAGTTTGAGACTGG TGCTGCCACTAGGACCAACAGAGACAGCGTGCTCCATCAATTGATGCCTA AAGAATGTCAAGGGTGCCTCTTGTCTCCGCATCCAAGCGAAAACTTCGGA TGCTACCCGTACACGGAAAGCGACGCACGACCTGGGGAAGAAAAGCAAGG CCGACGAGAGGCGGCAGGGATCCCGGCAGGGATGCAGAGTCGATGGGCGG GTTTAGGGTGACATCAAGTATTGACCAAAGGGCGTAGGCATGGCCATTCT CATTTCTGTATTTGTGTGCCACTGTCCCATTGGTTTGTCTTTGAGTGTGG TTCCAAGTAATGTCACGTGAAAAGAAAGCGACGCGTCCGGCGCGCGGCGC GAGAGCACAGCACATAGGAAAAAGGAACTAGAACTAAGTTCCTCAACCTT CTGGTCTGATATGCTATGTTTGATAGAAGCATCAATTTGCAGATCCGCAT GTTTAGAGTTTTTAGACTTACTCCATGCTGCACACGCTCTACCGCTTAGC CATCTCGACGGCCTGCAATGTAAGCACGAGTGTACCTTTTGTGTGGGGGT TGTCGTCGGTTGTTCTCCTGTAACTACGCTCCAATAAGCAAAGCACTGCG CTTCCTTCCCTCTAGGCCAATCCTTCGCTACCCAGACCCAATATACACAT ACTCATGCTCATAAATATGCACATGCACACATGTCTCCTGGCATTTCCCG TGCCCTTCCACACTTCCACAGCACCGGGAGTGTGTCTGCGTTTTCCCCGC CTTGTTCGATTTTCTCAAAACATTAGCAGGATATACGCACCAAGCCTCGT TTGTAACCCTCCTATTCATCTCAACCCCTTTTCTGTCCTTTCCCTCACAT GCATCACCATTACAAAACGGCTCCGCCGCTCCCCGAGTCACCAATCCCAA GCAACAAACATGCCCAAACGCGCTGCTGACGCGGACTTGGTCCAACCCAA GGGCGCCATGAATGCCTACATGCACTTCGCCACAAACCCCACCATTAAGG AGAGAGCCAAAGCAAAGCTTCCTACGGGAGCTTCGGTACGTATACATGGT AGGAATGAAAGGAGATGGCATGGAAGGAAGAGCGATGTGAAGGGAAGGTA CGGCCATGATGGCATTGGAAGACGGGTGACACCACACCCTCCACATGCCC TCTTCTTCCCTTGCCCTTAACCCCCCAAATCCACCCATAGATCAAGGACA TCACCTCCAAATGCGGGCAGATGTGGCGAGAGATGTCGGATGAGGACAAG AAGCCGTGGACCATCCGCGCGGAGGCCGACAAGGCCCGGCACGCCAAGGA GATGGAAGTCTTCGTCAAGGCGGGCGGGATGAAGAAGGAGCGGAAGAGCA AGAAGAGCAAGGCCAACCCTGCCAAGACTTCTATCAAAGGAAACGGTGGG AAGGGAGGGAATAAGAAGGAAGGGAAGGGGAAGGGGAGGGGGAAAGGGAA AGTGACTGCGGTGGCGAAATCTTCAAAAAAAAAGATGAAGGAGAGGGCAG CCCGGGACCTGACCAAGCCTGTGGCGCCCGGGAATGCTTTTGATCTCTTC GTGAAAGGCGAGTCCGAATCCGAGAGTCGGAAGGATGAATTTAAGAAGAT GCTGAAGAAGGACGTCCGGGCGATGATGAAGAAGGAGTGGGACGAGATGG ATGAGGAGGAGCATAAAGTGTGGAAGGATGCCGCCAAGACCGCCAACGAA GAGTACAAGATCGCTCTCGAGGCCTGGCAATGCAAGCAAGGTCCTCCTGC CGTCGTTCCTGTTTCCCCCGCAACAACCACTCGTGCGGCAGAGGGAGGCA AGGACGAGGGAGGGGAGGAAGAGGAAGATGATGAAATTGAGATGGAGGAG GAGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGA GGAGGAGGTGGAGGAGGAGGGAGGCAAGGAAAAAGAGGTGGATACGTAAG GGGTGACAGTTGTTAGGCATTTCATGATACGTGTCTGACACCAGCAATAA TAGTTTGGTGTGATGAGAACAGAGGAAAAGAGAGTGCGTGCGCGCCATGC GTGAGTGAGTAGGAAAGAGAGAAGGTAAGAGGAGCTGCGACGAATCAGGA AGAGGGAGGGAGGGGATCTTTGCGCTGGACTTTGAAAGTTTTTCGGAAGA ATCTTCGAAGCGGTCATTACCCCAAGAATACGCAGGAGCAGGATATATAT ATATAGAGAGAGAGAGGCAAGACGAGCGTGAGCCAATGTGAAAGAGAGTG ATCTGTGTGAGAGAGAGGTACAGCAAGAGGCGGGCGGGGAAGGGAGAACC GCATGCCGTCATTTTGTGGTGTCAATTAGTTCATTTGTTCATGGGATTAT ACGTACAGTCACGTGTGACAGCAGCAGCAGCTACTGCTGCAGGAGAAGTG ATTGTAGAAAACGAGAGAGGGGCGAGGGAAAGGTGCTGAAAGCGGCCAGA CTTCGCAAGCACTAGTCTCTCTCAACATCACGATCAGAAACAGAAATGGA GGCAAGAGCTTCTCAGGAAGCCAACTAATCCACAATGGTGA back to topprotein sequence of NO06G03470.2 >NO06G03470.2-protein ID=NO06G03470.2-protein|Name=NO06G03470.2|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp MWREMSDEDKKPWTIRAEADKARHAKEMEVFVKAGGMKKERKSKKSKANP AKTSIKGNGGKGGNKKEGKGKGRGKGKVTAVAKSSKKKMKERAARDLTKP VAPGNAFDLFVKGESESESRKDEFKKMLKKDVRAMMKKEWDEMDEEEHKV WKDAAKTANEEYKIALEAWQCKQGPPAVVPVSPATTTRAAEGGKDEGGEE EEDDEIEMEEEEEGKEEEEEEVEEEEEEEVEEEGGKEKEVDT* back to topmRNA from alignment at chr6:957889..962309- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03470.2 ID=NO06G03470.2|Name=NO06G03470.2|organism=Nannochloropsis oceanica|type=mRNA|length=4421bp|location=Sequence derived from alignment at chr6:957889..962309- (Nannochloropsis oceanica) GCAGCTGGAGCAGCTGGAGCAGCTGGAGCAGCTGGAGAAGCTGGAGTAGC
TGGAGCAGCTGGAGAAGCTGGAGTAGCAGGCTTACCAGGTACCTCGTCCT
TGGACACAGTCTTGCAGGCGATGCGTGTCGTCATGGTGGCCATGGGTATC
AGCACGGAGATGAAATTGGGGATGATTTGTGCACGCAAGGAGCCTTCGGC
CTTAATTGCAGTGGTCATACCATTAAGAGTGCAGTCATCGGCAATATCGC
GGACTTCCGGGAGGTTTGTGTGGATCTCGGCGTGGAGTTGGAACACCTGG
GAGGAAGAGAGGGAGGGAGGGAAGAAGGGTCACTACAAAAAAAGGTTGAC
GTCCCTTCCTGTCCTTTTCTATTCCTTTTCCTTGTACCTTGGATCCACGG
GCGGGAATATTGACGATCCTTTCGTGCATGGCGGTACCGATATTGTGGTC
TTGAAAGTCTGGAAAAAAGGGGGGAAGGACGGGGAAAGGAGGGGGGAAGG
AGGAGCTGGTCAGAATCATTGGCGTCAGCTGACGGACAAATGAAAACACA
CACACACGAGACAGCCTCAAAACATGTGTGCAGGTACGGCAGGTACTAGA
AGCCGGGATTTCAGACTCCCTAAAATGCATGAGGCCTAAGATTGTTGTGT
GAGCAAAAATAGAAACAGACCACCCCCAACCCCTTTCAGAGACTTTCTTG
GCTCTACATCCACCCGACATTGTTTGGTAACGCACCCTTTAATTGCAGAG
CCACGTCGCTGAATAATAGGCGATAGTTGTTGGGGTTGACGACCTTCACA
CCGATGTCCTGTAGGGAAGAAGGCGAGCGGGAAAAATGGAGAGGGGAGAA
TTTATGCCTAGGCTTTGGAGTGCTTGGTAGCATGCAAGCATGCCGCCCCG
CCGGCGGACATGGCTTCAATGACATTTTTTCACACCGTTTTGTAAACAAT
TATTCACTCTCCTGCGTGATGTAAAGCTTCTGTATTCTACACTTTTAAAC
AAAAACAAAAACAAAAAACTGACCCTTCCTGACCTCCCTTCCTACCCCTC
CCCTCCCTTCCCTCCTTTCCCTCCTCCAATGACGTACCAAATCAAAATCC
GTCGGCACAGACTGACCATCTATGGCGGGTAAACGAAAGGATGATCCACC
TTTCTCGTACACCACCGTCGGCATGTCAAACCAAATCACATGCTTGGCGA
CCAAAATGCCCACTACAATCAGGGTGACCGCCAGAAGGGCAAGCGTCCAG
CCTAAGCACCGGCAACATCGCGACTCACGAAAGGGTGTGACGGGAAACGT
GGAGATATCGGTATCCCACGATTCTTTGGTGCGGGGCTCTGACTCTGTCG
CGTCGTAAGACGAAGACTCGTAGGAAGACGAGTCCTCATCGCTTCCGCTG
CTGTCGCCTGAGGAGGAGGAGGAGGACGACGACGACGACGACGAGGACGA
GGACGAGGGGGATTCTGGCTGTGCTTGCTCCAAGTCTTGGGGCCTCTCCA
AGGGTGAGACCAAGGCGAGTGCCATGGTGCTGTGTCTTTGTTGTGTGGAT
GTGGATAGGGAACAAAGTGGGTGACGGGAGTTCCAAATAAATCAGAGTCC
CTCTCGCCCCTGGCGGTCGGACAGTGATTGGACAGAGAGTTTGAGACTGG
TGCTGCCACTAGGACCAACAGAGACAGCGTGCTCCATCAATTGATGCCTA
AAGAATGTCAAGGGTGCCTCTTGTCTCCGCATCCAAGCGAAAACTTCGGA
TGCTACCCGTACACGGAAAGCGACGCACGACCTGGGGAAGAAAAGCAAGG
CCGACGAGAGGCGGCAGGGATCCCGGCAGGGATGCAGAGTCGATGGGCGG
GTTTAGGGTGACATCAAGTATTGACCAAAGGGCGTAGGCATGGCCATTCT
CATTTCTGTATTTGTGTGCCACTGTCCCATTGGTTTGTCTTTGAGTGTGG
TTCCAAGTAATGTCACGTGAAAAGAAAGCGACGCGTCCGGCGCGCGGCGC
GAGAGCACAGCACATAGGAAAAAGGAACTAGAACTAAGTTCCTCAACCTT
CTGGTCTGATATGCTATGTTTGATAGAAGCATCAATTTGCAGATCCGCAT
GTTTAGAGTTTTTAGACTTACTCCATGCTGCACACGCTCTACCGCTTAGC
CATCTCGACGGCCTGCAATGTAAGCACGAGTGTACCTTTTGTGTGGGGGT
TGTCGTCGGTTGTTCTCCTGTAACTACGCTCCAATAAGCAAAGCACTGCG
CTTCCTTCCCTCTAGGCCAATCCTTCGCTACCCAGACCCAATATACACAT
ACTCATGCTCATAAATATGCACATGCACACATGTCTCCTGGCATTTCCCG
TGCCCTTCCACACTTCCACAGCACCGGGAGTGTGTCTGCGTTTTCCCCGC
CTTGTTCGATTTTCTCAAAACATTAGCAGGATATACGCACCAAGCCTCGT
TTGTAACCCTCCTATTCATCTCAACCCCTTTTCTGTCCTTTCCCTCACAT
GCATCACCATTACAAAACGGCTCCGCCGCTCCCCGAGTCACCAATCCCAA
GCAACAAACATGCCCAAACGCGCTGCTGACGCGGACTTGGTCCAACCCAA
GGGCGCCATGAATGCCTACATGCACTTCGCCACAAACCCCACCATTAAGG
AGAGAGCCAAAGCAAAGCTTCCTACGGGAGCTTCGGTACGTATACATGGT
AGGAATGAAAGGAGATGGCATGGAAGGAAGAGCGATGTGAAGGGAAGGTA
CGGCCATGATGGCATTGGAAGACGGGTGACACCACACCCTCCACATGCCC
TCTTCTTCCCTTGCCCTTAACCCCCCAAATCCACCCATAGATCAAGGACA
TCACCTCCAAATGCGGGCAGATGTGGCGAGAGATGTCGGATGAGGACAAG
AAGGTACGCGCTCGTGCCTGACCTTCTTTTCTCTCATCCTCCTTTGTATT
GCCAAACCCGCCCACCTCGTCTTCCCTCCCTCTCCCGCATTTCTAACAAT
TGTTTGGCATGAACCTCATATTCTGTGTCTCCTCTTCGCTCCAGCCGTGG
ACCATCCGCGCGGAGGCCGACAAGGCCCGGCACGCCAAGGAGATGGAAGT
CTTCGTCAAGGCGGGCGGGATGAAGAAGGAGCGGAAGAGCAAGAAGAGCA
AGGCCAACCCTGCCAAGACTTCTATCAAAGGAAACGGTGGGAAGGGAGGG
AATAAGAAGGAAGGGAAGGGGAAGGGGAGGGGGAAAGGGAAAGTGACTGC
GGTGGCGAAATCTTCAAAAAAAAAGATGAAGGAGAGGGCAGCCCGGGACC
TGACCAAGCCTGTGGCGCCCGGGAATGCTTTTGATCTCTTCGTGAAAGGC
GAGTCCGAATCCGAGAGTCGGAAGGATGAATTTAAGAAGATGCTGAAGAA
GGACGTCCGGGCGATGATGAAGAAGGAGTGGGACGAGATGGATGAGGAGG
AGCATAAAGGTAATTAGGGGGGGAGGAGAGGATCCACACCCTTACCCACT
CAATCATCCCCATTCTATCCATTTACCCCCTCCTTTCCACTTCATCAGTG
TGGAAGGATGCCGCCAAGACCGCCAACGAAGAGTACAAGATCGCTCTCGA
GGCCTGGCAATGCAAGCAAGGTCCTCCTGCCGTCGTTCCTGTTTCCCCCG
CAACAACCACTCGTGCGGCAGAGGGAGGCAAGGACGAGGGAGGGGAGGAA
GAGGAAGATGATGAAATTGAGATGGAGGAGGAGGAGGAGGGGAAGGAGGA
GGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGG
GAGGCAAGGAAAAAGAGGTGGATACGTAAGGGGTGACAGTTGTTAGGCAT
TTCATGATACGTGTCTGACACCAGCAATAATAGTTTGGTGTGATGAGAAC
AGAGGAAAAGAGAGTGCGTGCGCGCCATGCGTGAGTGAGTAGGAAAGAGA
GAAGGTAAGAGGAGCTGCGACGAATCAGGAAGAGGGAGGGAGGGGATCTT
TGCGCTGGACTTTGAAAGTTTTTCGGAAGAATCTTCGAAGCGGTCATTAC
CCCAAGAATACGCAGGAGCAGGATATATATATATAGAGAGAGAGAGGCAA
GACGAGCGTGAGCCAATGTGAAAGAGAGTGATCTGTGTGAGAGAGAGGTA
CAGCAAGAGGCGGGCGGGGAAGGGAGAACCGCATGCCGTCATTTTGTGGT
GTCAATTAGTTCATTTGTTCATGGGATTATACGTACAGTCACGTGTGACA
GCAGCAGCAGCTACTGCTGCAGGAGAAGTGATTGTAGAAAACGAGAGAGG
GGCGAGGGAAAGGTGCTGAAAGCGGCCAGACTTCGCAAGCACTAGTCTCT
CTCAACATCACGATCAGAAACAGAAATGGAGGCAAGAGCTTCTCAGGAAG
CCAACTAATCCACAATGGTGA back to topCoding sequence (CDS) from alignment at chr6:957889..962309- >NO06G03470.2 ID=NO06G03470.2|Name=NO06G03470.2|organism=Nannochloropsis oceanica|type=CDS|length=729bp|location=Sequence derived from alignment at chr6:957889..962309- (Nannochloropsis oceanica) ATGTGGCGAGAGATGTCGGATGAGGACAAGAAGCCGTGGACCATCCGCGC GGAGGCCGACAAGGCCCGGCACGCCAAGGAGATGGAAGTCTTCGTCAAGG CGGGCGGGATGAAGAAGGAGCGGAAGAGCAAGAAGAGCAAGGCCAACCCT GCCAAGACTTCTATCAAAGGAAACGGTGGGAAGGGAGGGAATAAGAAGGA AGGGAAGGGGAAGGGGAGGGGGAAAGGGAAAGTGACTGCGGTGGCGAAAT CTTCAAAAAAAAAGATGAAGGAGAGGGCAGCCCGGGACCTGACCAAGCCT GTGGCGCCCGGGAATGCTTTTGATCTCTTCGTGAAAGGCGAGTCCGAATC CGAGAGTCGGAAGGATGAATTTAAGAAGATGCTGAAGAAGGACGTCCGGG CGATGATGAAGAAGGAGTGGGACGAGATGGATGAGGAGGAGCATAAAGTG TGGAAGGATGCCGCCAAGACCGCCAACGAAGAGTACAAGATCGCTCTCGA GGCCTGGCAATGCAAGCAAGGTCCTCCTGCCGTCGTTCCTGTTTCCCCCG CAACAACCACTCGTGCGGCAGAGGGAGGCAAGGACGAGGGAGGGGAGGAA GAGGAAGATGATGAAATTGAGATGGAGGAGGAGGAGGAGGGGAAGGAGGA GGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGG GAGGCAAGGAAAAAGAGGTGGATACGTAA back to top
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