NO06G03440, NO06G03440 (gene) Nannochloropsis oceanica

Overview
NameNO06G03440
Unique NameNO06G03440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2700
Alignment locationchr6:951147..953846 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:951147..953846 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO06G03440 vs. NCBI_GenBank
Match: EWM26324.1 (hypothetical protein Naga_100078g22 [Nannochloropsis gaditana])

HSP 1 Score: 338.2 bits (866), Expect = 6.500e-89
Identity = 260/703 (36.98%), Postives = 354/703 (50.36%), Query Frame = 0 
Query:   30 GDDVQQFS--TSNARQNDMLLVDLSLRRGSVLETSKEDFSSTGTTTTTVAVTPSWSTCLPIYAAYTIKNSVHVLILAFVLPLTIKNDATIHRPGLLEGQLHVSDALSSVYLCYLGLVVLLPPTLGAVRDAALASGKHTSLLPALVGVLCMGPVALXXXXXXXXXXXXXXXXXXXXXEHVAWTAVVVVMGCTIVSAELTSALLLADLTELQGLGSSSGAIAMMNGKANLVSVGLA-ILVGTAALMVSLTLETGPVAAARYGCIAILLVIFTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTST--MTAVFNTLIPKALVRVLVLSPPLLVHFLFFRMFYQAGLRCLAYLGSTYIIHNLELDNNVATKAVIIAFGAALIGMGMALAFLSANEKRVQKQREASRFXXXXXXXXXXXXXXXXAAARVEQNTHLSSSAESGPSSTALDVPEKAPLLIALALMTVLLAVSPTIVAKSSNLSIDASRDFGPLYILASVCGLCFGFVSAYEKGILASMLWPRGAQQQQFYTPSHDPSLAAAGIGVGQVCGLFIAFNALLEWAPTFLFAAFTRYSATSALWALALFFGLSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGSTDDSLNDIIPQLSRRKSSSLLQPLPSHLSTIAESSYEGTRRVGERSSSTV 728
            G+DVQ+ S       Q ++  VDL++R+GS LETS+ +   + ++  T       +   PIYAA+T+K++  + ILAF+LPL ++   T+  PGLL+G L V + LS VY+CYL ++ +  P  GA+ D   A  K  +L+   +   C+GPV                       +HV+WTAVV V G  IV+AE  +  LLADL+ +     S  A A++NGKA+LV VGLA +LVG   L++S+ L T P    RY CI+ +LV  TA                                       XXXXXXX                    RT    M A F  L P AL  V+ LSPP +V FLF RMFYQ G+RCL+YL +TYI+ +L+L  ++A KAV++AF  +L+GM + L +LSA   RVQKQ++ SR                 AAARVEQ+   S + E       LD PE  PL IALA++ V  A +PT VA S++     SRD G LY +A + G C GF+S YEKGILAS +WP  +QQQ         +     +GVG  CG+  A + +LEW PT LFA     +  SA W L+L+ GL +                              GS  +S +     +S R S  LL+ LPSHLSTI ES   G +R  + + STV
Sbjct:   64 GNDVQKPSLRPETENQQNLFYVDLTVRKGSRLETSQTNVIDSSSSNRT-------TRHFPIYAAHTLKSTTRIFILAFLLPLVMERGPTLDSPGLLQGHLFVREPLSIVYMCYLVIIAVFTPFWGALYDVLSAGSKSHALVFVFLAASCVGPVV---------AFVLLSPPSPANRQHVSWTAVVAVGGGMIVAAETLTGFLLADLSHMHSRPYSDAA-ALLNGKASLVGVGLATLLVGAPNLILSMALGTNPQTTTRYACISTVLVNLTA------------SLCIMFARLCFSWDGINMKRTQRRQQVXXXXXXXSRPRSGAGTSEGHETPQGDVRTPNFGMAACFRALRPGALACVVSLSPPFIVRFLFVRMFYQGGIRCLSYLATTYILQSLDLKIDIACKAVVVAFATSLLGMSLTLGYLSAQYSRVQKQQDVSRLRRASSASTASALGAAIAAARVEQDLTPSFAEEFRARPDPLDAPELPPLGIALAVLIVACAAAPTDVADSTDPLSAFSRDEGMLYSIAGIVGFCVGFISTYEKGILASTIWPNSSQQQ---------TAMVTQVGVGTFCGILTASSVVLEWLPTVLFAIVPSQALPSATWTLSLYLGLCLLLFALCMVWSHLKEKNRGAARRGRLSFSGAGSEANSRDQTEQTVSERVSGFLLRSLPSHLSTIIES--PGGQRERDSTCSTV 726
The following BLAST results are available for this feature:
BLAST of NO06G03440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26324.16.500e-8936.98hypothetical protein Naga_100078g22 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000134NSK000134Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03440.1NO06G03440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597662gene_6671Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100078g22gene4191Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03440.1NO06G03440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03440 ID=NO06G03440|Name=NO06G03440|organism=Nannochloropsis oceanica|type=gene|length=2700bp
ATGACACGGTCCCGTTGCGGGTCAATGGTTTCGTCGGCCTTAGATAGCAG
CGCCGTGTGCTTGGACCTGAACGACTCAAACTACGACGGTGACGATGTTC
AGCAATTTTCCACTTCCAATGCACGGCAGAATGATATGCTTCTTGTTGAC
CTATCCCTTCGGAGAGGTTCTGTGCTCGAGACGTCCAAAGAAGATTTCTC
GAGTACTGGGACCACCACCACCACCGTCGCTGTTACGCCATCCTGGAGTA
CGTGCTTACCTATCTACGCgtaagaatactttaaaatggaatacattctc
tcacgtactgctttacctcagctatcctatttaattcttgctgactgtac
attatatccctcacactctctcgctttctctccctctgtccattcccgcc
ctccctccttagTGCTTACACTATCAAAAACTCCGTCCACGTCCTCATCT
TGGCCTTTGTCTTGCCCCTTACCATAAAAAATGATGCCACTATCCATCGT
CCTGGCTTGTTGGAGGGGCAACTCCACGTCTCGGACGCACTCAGCAGTGT
CTATCTTTGCTACTTGGGCCTGGTAGTACTCCTACCTCCCACCCTAGGTG
CCGTGCGAGACGCCGCCCTAGCAAGTGGCAAGCATACATCACTTTTACCT
GCCCTTGTGGGTGTACTATGCATGGGCCCCGTTGCATTATTGGCGCTCTT
GTCGTCGTCTTCCTCCTCTTCGTCCTCCTCCTCGTCGATGGCGCATGGCG
GTGAGCATGTAGCGTGGACGGCCGTGGTGGTGGTAATGGGGTGCACAATC
GTGTCTGCCGAGCTGACGAGCGCCTTGTTACTGGCCGACTTGACGGAGCT
GCAGGGTTTGGGCTCGAGCAGTGGAGCGATTGCTATGATGAATGGAAAGG
CCAATTTGGTGAGTGTTGGTCTTGCTATCCTCGTGGGGACTGCGGCGTTG
ATGGTGTCTTTGACGCTGGAGACGGGCCCTGTGGCAGCTGCCCGGTATGG
ATGCATTGCAATTCTGCTCGTTATTTTTACTGCTGCGCTGTATGTTGTCC
TTGTCCACGTGTGTCTTGCCTCCATGATGGCGAGGCCGCCGCAAGCGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCCTCG
CGGGGGAGGAGACGACCAGAGCAACCACCCACACCAGCTGAGGCAACAGC
AGCACCAGCAGTGCCAGCACTACCAGCACCAGCGGACTAGCACCATGACA
GCAGTCTTTAACACACTAATTCCTAAAGCCCTTGTTCGTGTCCTGGTCTT
GAGCCCTCCCTTACTAGTCCACTTCTTGTTTTTCCGCATGTTCTACCAGG
CCGGCCTTCGGTGCCTGGCCTACCTCGGGAGCACATATATCATACACAAC
CTGGAACTAGACAATAATGTCGCTACAAAAGCTGTCATAATAGCTTTTGG
TGCTGCCTTAATAGGAATGGGAATGGCCTTAGCCTTTCTCTCTGCGAACG
AAAAAAGGGTTCAAAAACAACGAGAAGCCTCTCGCTTCCGCCGCGCCTCC
TCCGTCTCAGCTGCCACGGCTGTTGGCGCGGTCATCGCCGCTGCGCGCGT
GGAACAAAATACTCATTTGTCTTCTTCTGCGGAGTCTGGCCCATCCTCTA
CCGCGCTTGATGTCCCGGAAAAGGCGCCATTGCTTATCGCCTTGGCACTC
ATGACGGTGCTCCTTGCTGTTTCTCCGACAATTGTGGCCAAAAGCAGCAA
CCTGTCCATTGACGCCTCACGGGACTTCGGACCACTCTACATATTGGCAT
CCGTCTGTGGTCTCTGCTTTGGCTTTGTCTCCGCCTATGAAAAAGGGATT
TTAGCAAGCATGCTTTGGCCGCGAGGCGCGCAGCAGCAGCAATTCTACAC
TCCATCCCACGACCCATCACTCGCCGCGGCGGGTATTGGAGTGGGGCAGG
TTTGTGGGCTTTTTATAGCGTTCAATGCATTGTTGGAGTGGGCGCCCACT
TTTTTATTTGCAGCGTTTACAAGATATTCAGCCACTTCAGCTTTGTGGGC
GCTCGCACTCTTTTTTGGCTTAAGTGTTTTCGTTTTTGTAGTATTTGTCA
TTCTGGAAGGAGCGCGGGAGCGGCGAGAAAGTGAAAGGGGGGGAGGAGGA
GAGGGAGAAGGAAGAAAGGGCTCAACAGATGATTCCTTAAATGACATAAT
ACCCCAGCTGAGTCGGCGCAAATCCTCCTCGCTCTTGCAGCCTTTGCCCT
CTCACCTTTCTACCATTGCGGAGTCTTCCTATGAAGGGACAAGGCGTGTA
GGGGAAAGGTCTTCATCCACCGTCTCTTGTTCTTATCTGTCTGATCTTTC
AACCGCAGCCTCGTAAGCTTCCTTAGGCAGGACAATGAAGGCATAGAGCG
GGAAAGGGCGCGGAGGGGAGATAGAAAGAGGATGGGGAGGCGGACAGACT
GTCCAGAGGGGGGAGGCGGTTGTCGCTGTCGAGCATACGATGATAAGTGA
GCGAGTGTAGAGAGTGGAAGGGAGGACAGACCAACAGTATATGTTGAGCG
GGTGGAAATAATTGTAAAGTAAGGAAGGAGGGCGGAGGGCAAATGAGATA
CATTGATCGAATGCCGATTTCCGATCGAGGTGGCGATACGAAGGCGGGTC
TAGCTCTAAGGCTGAAAAATTGAATAAAAATGATTGACCCTATGAACAGA
back to top

protein sequence of NO06G03440.1

>NO06G03440.1-protein ID=NO06G03440.1-protein|Name=NO06G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=741bp
MTRSRCGSMVSSALDSSAVCLDLNDSNYDGDDVQQFSTSNARQNDMLLVD
LSLRRGSVLETSKEDFSSTGTTTTTVAVTPSWSTCLPIYAAYTIKNSVHV
LILAFVLPLTIKNDATIHRPGLLEGQLHVSDALSSVYLCYLGLVVLLPPT
LGAVRDAALASGKHTSLLPALVGVLCMGPVALLALLSSSSSSSSSSSSMA
HGGEHVAWTAVVVVMGCTIVSAELTSALLLADLTELQGLGSSSGAIAMMN
GKANLVSVGLAILVGTAALMVSLTLETGPVAAARYGCIAILLVIFTAALY
VVLVHVCLASMMARPPQAQQQQQQQQQQQQQQQRPRGGGDDQSNHPHQLR
QQQHQQCQHYQHQRTSTMTAVFNTLIPKALVRVLVLSPPLLVHFLFFRMF
YQAGLRCLAYLGSTYIIHNLELDNNVATKAVIIAFGAALIGMGMALAFLS
ANEKRVQKQREASRFRRASSVSAATAVGAVIAAARVEQNTHLSSSAESGP
SSTALDVPEKAPLLIALALMTVLLAVSPTIVAKSSNLSIDASRDFGPLYI
LASVCGLCFGFVSAYEKGILASMLWPRGAQQQQFYTPSHDPSLAAAGIGV
GQVCGLFIAFNALLEWAPTFLFAAFTRYSATSALWALALFFGLSVFVFVV
FVILEGARERRESERGGGGEGEGRKGSTDDSLNDIIPQLSRRKSSSLLQP
LPSHLSTIAESSYEGTRRVGERSSSTVSCSYLSDLSTAAS*
back to top
Synonyms
Publications