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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:951147..953846 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03440.1 vs.
Match: EWM26324.1 (hypothetical protein Naga_100078g22 [Nannochloropsis gaditana]) HSP 1 Score: 380.2 bits (975), Expect = 1.500e-101 Identity = 281/701 (40.09%), Postives = 393/701 (56.06%), Query Frame = 0
Query: 30 GDDVQQFST--SNARQNDMLLVDLSLRRGSVLETSKEDFSSTGTTTTTVAVTPSWSTCLPIYAAYTIKNSVHVLILAFVLPLTIKNDATIHRPGLLEGQLHVSDALSSVYLCYLGLVVLLPPTLGAVRDAALASGKHTSLLPALVGVLCMGPVALLALLSSSSSSSSSSSSMAHGGEHVAWTAVVVVMGCTIVSAELTSALLLADLTELQGLGSSSGAIAMMNGKANLVSVGLA-ILVGTAALMVSLTLETGPVAAARYGCIAILLVIFTAALYVVLVHVCLASMMARPPQAQQQQQQQQQQQQQQQRPRGGGDDQSNHPHQLRQQQHQQCQHYQHQRTSTMTAVFNTLIPKALVRVLVLSPPLLVHFLFFRMFYQAGLRCLAYLGSTYIIHNLELDNNVATKAVIIAFGAALIGMGMALAFLSANEKRVQKQREASRFRRASSVSAATAVGAVIAAARVEQNTHLSSSAESGPSSTALDVPEKAPLLIALALMTVLLAVSPTIVAKSSNLSIDASRDFGPLYILASVCGLCFGFVSAYEKGILASMLWPRGAQQQQFYTPSHDPSLAAAGIGVGQVCGLFIAFNALLEWAPTFLFAAFTRYSATSALWALALFFGLSVFVFVVFVILEGARERRESERGGGGEGEGRKGSTDDSLNDIIPQLSRRKSSSLLQPLPSHLSTIAESSYEGTRRVGERSSSTV 728
G+DVQ+ S Q ++ VDL++R+GS LETS+ + + ++ T + PIYAA+T+K++ + ILAF+LPL ++ T+ PGLL+G L V + LS VY+CYL ++ + P GA+ D A K +L+ + C+GPV LLS S ++ +HV+WTAVV V G IV+AE + LLADL+ + S A A++NGKA+LV VGLA +LVG L++S+ L T P RY CI+ +LV TA+L ++ +C S + Q++QQ RPR G H + Q M A F L P AL V+ LSPP +V FLF RMFYQ G+RCL+YL +TYI+ +L+L ++A KAV++AF +L+GM + L +LSA RVQKQ++ SR RRASS S A+A+GA IAAARVEQ+ S + E LD PE PL IALA++ V A +PT VA S++ SRD G LY +A + G C GF+S YEKGILAS +WP +QQQ + +GVG CG+ A + +LEW PT LFA + SA W L+L+ GL + +F + ++ +E+ G GS +S + +S R S LL+ LPSHLSTI ES G +R + + STV
Sbjct: 64 GNDVQKPSLRPETENQQNLFYVDLTVRKGSRLETSQTNVIDSSSSNRT-------TRHFPIYAAHTLKSTTRIFILAFLLPLVMERGPTLDSPGLLQGHLFVREPLSIVYMCYLVIIAVFTPFWGALYDVLSAGSKSHALVFVFLAASCVGPVVAFVLLSPPSPANR---------QHVSWTAVVAVGGGMIVAAETLTGFLLADLSHMHSRPYSDAA-ALLNGKASLVGVGLATLLVGAPNLILSMALGTNPQTTTRYACISTVLVNLTASLCIMFARLCF-SWDGINMKRTQRRQQVVVSASSSSRPRSGAGTSEGH---------ETPQGDVRTPNFGMAACFRALRPGALACVVSLSPPFIVRFLFVRMFYQGGIRCLSYLATTYILQSLDLKIDIACKAVVVAFATSLLGMSLTLGYLSAQYSRVQKQQDVSRLRRASSASTASALGAAIAAARVEQDLTPSFAEEFRARPDPLDAPELPPLGIALAVLIVACAAAPTDVADSTDPLSAFSRDEGMLYSIAGIVGFCVGFISTYEKGILASTIWPNSSQQQ---------TAMVTQVGVGTFCGILTASSVVLEWLPTVLFAIVPSQALPSATWTLSLYLGLCLLLFALCMVWSHLKEKNRGAARRGRLSFSGAGSEANSRDQTEQTVSERVSGFLLRSLPSHLSTIIES--PGGQRERDSTCSTV 726
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03440.1 ID=NO06G03440.1|Name=NO06G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2557bp ATGACACGGTCCCGTTGCGGGTCAATGGTTTCGTCGGCCTTAGATAGCAG CGCCGTGTGCTTGGACCTGAACGACTCAAACTACGACGGTGACGATGTTC AGCAATTTTCCACTTCCAATGCACGGCAGAATGATATGCTTCTTGTTGAC CTATCCCTTCGGAGAGGTTCTGTGCTCGAGACGTCCAAAGAAGATTTCTC GAGTACTGGGACCACCACCACCACCGTCGCTGTTACGCCATCCTGGAGTA CGTGCTTACCTATCTACGCTGCTTACACTATCAAAAACTCCGTCCACGTC CTCATCTTGGCCTTTGTCTTGCCCCTTACCATAAAAAATGATGCCACTAT CCATCGTCCTGGCTTGTTGGAGGGGCAACTCCACGTCTCGGACGCACTCA GCAGTGTCTATCTTTGCTACTTGGGCCTGGTAGTACTCCTACCTCCCACC CTAGGTGCCGTGCGAGACGCCGCCCTAGCAAGTGGCAAGCATACATCACT TTTACCTGCCCTTGTGGGTGTACTATGCATGGGCCCCGTTGCATTATTGG CGCTCTTGTCGTCGTCTTCCTCCTCTTCGTCCTCCTCCTCGTCGATGGCG CATGGCGGTGAGCATGTAGCGTGGACGGCCGTGGTGGTGGTAATGGGGTG CACAATCGTGTCTGCCGAGCTGACGAGCGCCTTGTTACTGGCCGACTTGA CGGAGCTGCAGGGTTTGGGCTCGAGCAGTGGAGCGATTGCTATGATGAAT GGAAAGGCCAATTTGGTGAGTGTTGGTCTTGCTATCCTCGTGGGGACTGC GGCGTTGATGGTGTCTTTGACGCTGGAGACGGGCCCTGTGGCAGCTGCCC GGTATGGATGCATTGCAATTCTGCTCGTTATTTTTACTGCTGCGCTGTAT GTTGTCCTTGTCCACGTGTGTCTTGCCTCCATGATGGCGAGGCCGCCGCA AGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC GGCCTCGCGGGGGAGGAGACGACCAGAGCAACCACCCACACCAGCTGAGG CAACAGCAGCACCAGCAGTGCCAGCACTACCAGCACCAGCGGACTAGCAC CATGACAGCAGTCTTTAACACACTAATTCCTAAAGCCCTTGTTCGTGTCC TGGTCTTGAGCCCTCCCTTACTAGTCCACTTCTTGTTTTTCCGCATGTTC TACCAGGCCGGCCTTCGGTGCCTGGCCTACCTCGGGAGCACATATATCAT ACACAACCTGGAACTAGACAATAATGTCGCTACAAAAGCTGTCATAATAG CTTTTGGTGCTGCCTTAATAGGAATGGGAATGGCCTTAGCCTTTCTCTCT GCGAACGAAAAAAGGGTTCAAAAACAACGAGAAGCCTCTCGCTTCCGCCG CGCCTCCTCCGTCTCAGCTGCCACGGCTGTTGGCGCGGTCATCGCCGCTG CGCGCGTGGAACAAAATACTCATTTGTCTTCTTCTGCGGAGTCTGGCCCA TCCTCTACCGCGCTTGATGTCCCGGAAAAGGCGCCATTGCTTATCGCCTT GGCACTCATGACGGTGCTCCTTGCTGTTTCTCCGACAATTGTGGCCAAAA GCAGCAACCTGTCCATTGACGCCTCACGGGACTTCGGACCACTCTACATA TTGGCATCCGTCTGTGGTCTCTGCTTTGGCTTTGTCTCCGCCTATGAAAA AGGGATTTTAGCAAGCATGCTTTGGCCGCGAGGCGCGCAGCAGCAGCAAT TCTACACTCCATCCCACGACCCATCACTCGCCGCGGCGGGTATTGGAGTG GGGCAGGTTTGTGGGCTTTTTATAGCGTTCAATGCATTGTTGGAGTGGGC GCCCACTTTTTTATTTGCAGCGTTTACAAGATATTCAGCCACTTCAGCTT TGTGGGCGCTCGCACTCTTTTTTGGCTTAAGTGTTTTCGTTTTTGTAGTA TTTGTCATTCTGGAAGGAGCGCGGGAGCGGCGAGAAAGTGAAAGGGGGGG AGGAGGAGAGGGAGAAGGAAGAAAGGGCTCAACAGATGATTCCTTAAATG ACATAATACCCCAGCTGAGTCGGCGCAAATCCTCCTCGCTCTTGCAGCCT TTGCCCTCTCACCTTTCTACCATTGCGGAGTCTTCCTATGAAGGGACAAG GCGTGTAGGGGAAAGGTCTTCATCCACCGTCTCTTGTTCTTATCTGTCTG ATCTTTCAACCGCAGCCTCGTAAGCTTCCTTAGGCAGGACAATGAAGGCA TAGAGCGGGAAAGGGCGCGGAGGGGAGATAGAAAGAGGATGGGGAGGCGG ACAGACTGTCCAGAGGGGGGAGGCGGTTGTCGCTGTCGAGCATACGATGA TAAGTGAGCGAGTGTAGAGAGTGGAAGGGAGGACAGACCAACAGTATATG TTGAGCGGGTGGAAATAATTGTAAAGTAAGGAAGGAGGGCGGAGGGCAAA TGAGATACATTGATCGAATGCCGATTTCCGATCGAGGTGGCGATACGAAG GCGGGTCTAGCTCTAAGGCTGAAAAATTGAATAAAAATGATTGACCCTAT GAACAGA back to topprotein sequence of NO06G03440.1 >NO06G03440.1-protein ID=NO06G03440.1-protein|Name=NO06G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=741bp MTRSRCGSMVSSALDSSAVCLDLNDSNYDGDDVQQFSTSNARQNDMLLVD LSLRRGSVLETSKEDFSSTGTTTTTVAVTPSWSTCLPIYAAYTIKNSVHV LILAFVLPLTIKNDATIHRPGLLEGQLHVSDALSSVYLCYLGLVVLLPPT LGAVRDAALASGKHTSLLPALVGVLCMGPVALLALLSSSSSSSSSSSSMA HGGEHVAWTAVVVVMGCTIVSAELTSALLLADLTELQGLGSSSGAIAMMN GKANLVSVGLAILVGTAALMVSLTLETGPVAAARYGCIAILLVIFTAALY VVLVHVCLASMMARPPQAQQQQQQQQQQQQQQQRPRGGGDDQSNHPHQLR QQQHQQCQHYQHQRTSTMTAVFNTLIPKALVRVLVLSPPLLVHFLFFRMF YQAGLRCLAYLGSTYIIHNLELDNNVATKAVIIAFGAALIGMGMALAFLS ANEKRVQKQREASRFRRASSVSAATAVGAVIAAARVEQNTHLSSSAESGP SSTALDVPEKAPLLIALALMTVLLAVSPTIVAKSSNLSIDASRDFGPLYI LASVCGLCFGFVSAYEKGILASMLWPRGAQQQQFYTPSHDPSLAAAGIGV GQVCGLFIAFNALLEWAPTFLFAAFTRYSATSALWALALFFGLSVFVFVV FVILEGARERRESERGGGGEGEGRKGSTDDSLNDIIPQLSRRKSSSLLQP LPSHLSTIAESSYEGTRRVGERSSSTVSCSYLSDLSTAAS* back to topmRNA from alignment at chr6:951147..953846+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03440.1 ID=NO06G03440.1|Name=NO06G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2700bp|location=Sequence derived from alignment at chr6:951147..953846+ (Nannochloropsis oceanica) ATGACACGGTCCCGTTGCGGGTCAATGGTTTCGTCGGCCTTAGATAGCAG
CGCCGTGTGCTTGGACCTGAACGACTCAAACTACGACGGTGACGATGTTC
AGCAATTTTCCACTTCCAATGCACGGCAGAATGATATGCTTCTTGTTGAC
CTATCCCTTCGGAGAGGTTCTGTGCTCGAGACGTCCAAAGAAGATTTCTC
GAGTACTGGGACCACCACCACCACCGTCGCTGTTACGCCATCCTGGAGTA
CGTGCTTACCTATCTACGCGTAAGAATACTTTAAAATGGAATACATTCTC
TCACGTACTGCTTTACCTCAGCTATCCTATTTAATTCTTGCTGACTGTAC
ATTATATCCCTCACACTCTCTCGCTTTCTCTCCCTCTGTCCATTCCCGCC
CTCCCTCCTTAGTGCTTACACTATCAAAAACTCCGTCCACGTCCTCATCT
TGGCCTTTGTCTTGCCCCTTACCATAAAAAATGATGCCACTATCCATCGT
CCTGGCTTGTTGGAGGGGCAACTCCACGTCTCGGACGCACTCAGCAGTGT
CTATCTTTGCTACTTGGGCCTGGTAGTACTCCTACCTCCCACCCTAGGTG
CCGTGCGAGACGCCGCCCTAGCAAGTGGCAAGCATACATCACTTTTACCT
GCCCTTGTGGGTGTACTATGCATGGGCCCCGTTGCATTATTGGCGCTCTT
GTCGTCGTCTTCCTCCTCTTCGTCCTCCTCCTCGTCGATGGCGCATGGCG
GTGAGCATGTAGCGTGGACGGCCGTGGTGGTGGTAATGGGGTGCACAATC
GTGTCTGCCGAGCTGACGAGCGCCTTGTTACTGGCCGACTTGACGGAGCT
GCAGGGTTTGGGCTCGAGCAGTGGAGCGATTGCTATGATGAATGGAAAGG
CCAATTTGGTGAGTGTTGGTCTTGCTATCCTCGTGGGGACTGCGGCGTTG
ATGGTGTCTTTGACGCTGGAGACGGGCCCTGTGGCAGCTGCCCGGTATGG
ATGCATTGCAATTCTGCTCGTTATTTTTACTGCTGCGCTGTATGTTGTCC
TTGTCCACGTGTGTCTTGCCTCCATGATGGCGAGGCCGCCGCAAGCGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCCTCG
CGGGGGAGGAGACGACCAGAGCAACCACCCACACCAGCTGAGGCAACAGC
AGCACCAGCAGTGCCAGCACTACCAGCACCAGCGGACTAGCACCATGACA
GCAGTCTTTAACACACTAATTCCTAAAGCCCTTGTTCGTGTCCTGGTCTT
GAGCCCTCCCTTACTAGTCCACTTCTTGTTTTTCCGCATGTTCTACCAGG
CCGGCCTTCGGTGCCTGGCCTACCTCGGGAGCACATATATCATACACAAC
CTGGAACTAGACAATAATGTCGCTACAAAAGCTGTCATAATAGCTTTTGG
TGCTGCCTTAATAGGAATGGGAATGGCCTTAGCCTTTCTCTCTGCGAACG
AAAAAAGGGTTCAAAAACAACGAGAAGCCTCTCGCTTCCGCCGCGCCTCC
TCCGTCTCAGCTGCCACGGCTGTTGGCGCGGTCATCGCCGCTGCGCGCGT
GGAACAAAATACTCATTTGTCTTCTTCTGCGGAGTCTGGCCCATCCTCTA
CCGCGCTTGATGTCCCGGAAAAGGCGCCATTGCTTATCGCCTTGGCACTC
ATGACGGTGCTCCTTGCTGTTTCTCCGACAATTGTGGCCAAAAGCAGCAA
CCTGTCCATTGACGCCTCACGGGACTTCGGACCACTCTACATATTGGCAT
CCGTCTGTGGTCTCTGCTTTGGCTTTGTCTCCGCCTATGAAAAAGGGATT
TTAGCAAGCATGCTTTGGCCGCGAGGCGCGCAGCAGCAGCAATTCTACAC
TCCATCCCACGACCCATCACTCGCCGCGGCGGGTATTGGAGTGGGGCAGG
TTTGTGGGCTTTTTATAGCGTTCAATGCATTGTTGGAGTGGGCGCCCACT
TTTTTATTTGCAGCGTTTACAAGATATTCAGCCACTTCAGCTTTGTGGGC
GCTCGCACTCTTTTTTGGCTTAAGTGTTTTCGTTTTTGTAGTATTTGTCA
TTCTGGAAGGAGCGCGGGAGCGGCGAGAAAGTGAAAGGGGGGGAGGAGGA
GAGGGAGAAGGAAGAAAGGGCTCAACAGATGATTCCTTAAATGACATAAT
ACCCCAGCTGAGTCGGCGCAAATCCTCCTCGCTCTTGCAGCCTTTGCCCT
CTCACCTTTCTACCATTGCGGAGTCTTCCTATGAAGGGACAAGGCGTGTA
GGGGAAAGGTCTTCATCCACCGTCTCTTGTTCTTATCTGTCTGATCTTTC
AACCGCAGCCTCGTAAGCTTCCTTAGGCAGGACAATGAAGGCATAGAGCG
GGAAAGGGCGCGGAGGGGAGATAGAAAGAGGATGGGGAGGCGGACAGACT
GTCCAGAGGGGGGAGGCGGTTGTCGCTGTCGAGCATACGATGATAAGTGA
GCGAGTGTAGAGAGTGGAAGGGAGGACAGACCAACAGTATATGTTGAGCG
GGTGGAAATAATTGTAAAGTAAGGAAGGAGGGCGGAGGGCAAATGAGATA
CATTGATCGAATGCCGATTTCCGATCGAGGTGGCGATACGAAGGCGGGTC
TAGCTCTAAGGCTGAAAAATTGAATAAAAATGATTGACCCTATGAACAGA
back to topCoding sequence (CDS) from alignment at chr6:951147..953846+ >NO06G03440.1 ID=NO06G03440.1|Name=NO06G03440.1|organism=Nannochloropsis oceanica|type=CDS|length=2223bp|location=Sequence derived from alignment at chr6:951147..953846+ (Nannochloropsis oceanica) ATGACACGGTCCCGTTGCGGGTCAATGGTTTCGTCGGCCTTAGATAGCAG CGCCGTGTGCTTGGACCTGAACGACTCAAACTACGACGGTGACGATGTTC AGCAATTTTCCACTTCCAATGCACGGCAGAATGATATGCTTCTTGTTGAC CTATCCCTTCGGAGAGGTTCTGTGCTCGAGACGTCCAAAGAAGATTTCTC GAGTACTGGGACCACCACCACCACCGTCGCTGTTACGCCATCCTGGAGTA CGTGCTTACCTATCTACGCTGCTTACACTATCAAAAACTCCGTCCACGTC CTCATCTTGGCCTTTGTCTTGCCCCTTACCATAAAAAATGATGCCACTAT CCATCGTCCTGGCTTGTTGGAGGGGCAACTCCACGTCTCGGACGCACTCA GCAGTGTCTATCTTTGCTACTTGGGCCTGGTAGTACTCCTACCTCCCACC CTAGGTGCCGTGCGAGACGCCGCCCTAGCAAGTGGCAAGCATACATCACT TTTACCTGCCCTTGTGGGTGTACTATGCATGGGCCCCGTTGCATTATTGG CGCTCTTGTCGTCGTCTTCCTCCTCTTCGTCCTCCTCCTCGTCGATGGCG CATGGCGGTGAGCATGTAGCGTGGACGGCCGTGGTGGTGGTAATGGGGTG CACAATCGTGTCTGCCGAGCTGACGAGCGCCTTGTTACTGGCCGACTTGA CGGAGCTGCAGGGTTTGGGCTCGAGCAGTGGAGCGATTGCTATGATGAAT GGAAAGGCCAATTTGGTGAGTGTTGGTCTTGCTATCCTCGTGGGGACTGC GGCGTTGATGGTGTCTTTGACGCTGGAGACGGGCCCTGTGGCAGCTGCCC GGTATGGATGCATTGCAATTCTGCTCGTTATTTTTACTGCTGCGCTGTAT GTTGTCCTTGTCCACGTGTGTCTTGCCTCCATGATGGCGAGGCCGCCGCA AGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC GGCCTCGCGGGGGAGGAGACGACCAGAGCAACCACCCACACCAGCTGAGG CAACAGCAGCACCAGCAGTGCCAGCACTACCAGCACCAGCGGACTAGCAC CATGACAGCAGTCTTTAACACACTAATTCCTAAAGCCCTTGTTCGTGTCC TGGTCTTGAGCCCTCCCTTACTAGTCCACTTCTTGTTTTTCCGCATGTTC TACCAGGCCGGCCTTCGGTGCCTGGCCTACCTCGGGAGCACATATATCAT ACACAACCTGGAACTAGACAATAATGTCGCTACAAAAGCTGTCATAATAG CTTTTGGTGCTGCCTTAATAGGAATGGGAATGGCCTTAGCCTTTCTCTCT GCGAACGAAAAAAGGGTTCAAAAACAACGAGAAGCCTCTCGCTTCCGCCG CGCCTCCTCCGTCTCAGCTGCCACGGCTGTTGGCGCGGTCATCGCCGCTG CGCGCGTGGAACAAAATACTCATTTGTCTTCTTCTGCGGAGTCTGGCCCA TCCTCTACCGCGCTTGATGTCCCGGAAAAGGCGCCATTGCTTATCGCCTT GGCACTCATGACGGTGCTCCTTGCTGTTTCTCCGACAATTGTGGCCAAAA GCAGCAACCTGTCCATTGACGCCTCACGGGACTTCGGACCACTCTACATA TTGGCATCCGTCTGTGGTCTCTGCTTTGGCTTTGTCTCCGCCTATGAAAA AGGGATTTTAGCAAGCATGCTTTGGCCGCGAGGCGCGCAGCAGCAGCAAT TCTACACTCCATCCCACGACCCATCACTCGCCGCGGCGGGTATTGGAGTG GGGCAGGTTTGTGGGCTTTTTATAGCGTTCAATGCATTGTTGGAGTGGGC GCCCACTTTTTTATTTGCAGCGTTTACAAGATATTCAGCCACTTCAGCTT TGTGGGCGCTCGCACTCTTTTTTGGCTTAAGTGTTTTCGTTTTTGTAGTA TTTGTCATTCTGGAAGGAGCGCGGGAGCGGCGAGAAAGTGAAAGGGGGGG AGGAGGAGAGGGAGAAGGAAGAAAGGGCTCAACAGATGATTCCTTAAATG ACATAATACCCCAGCTGAGTCGGCGCAAATCCTCCTCGCTCTTGCAGCCT TTGCCCTCTCACCTTTCTACCATTGCGGAGTCTTCCTATGAAGGGACAAG GCGTGTAGGGGAAAGGTCTTCATCCACCGTCTCTTGTTCTTATCTGTCTG ATCTTTCAACCGCAGCCTCGTAA back to top
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