NO06G03390, NO06G03390 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G03390
Unique Name	NO06G03390
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2709
Alignment location	chr6:936809..939517 -

Link to JBrowse

Properties


Property Name	Value
Description	Hydroxyacyl-coenzyme a mitochondrial

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:936809..939517 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity
GO:0016491	oxidoreductase activity
GO:0003824	catalytic activity
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006631	fatty acid metabolic process
GO:0055114	oxidation-reduction process
GO:0009987	cellular process
GO:0006629	lipid metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR008927	6-PGluconate_DH_C-like
IPR036291	NAD(P)-bd_dom_sf
IPR006176	3-OHacyl-CoA_DH_NAD-bd
IPR006108	3HC_DH_C

Homology

[Close]

BLAST of NO06G03390 vs. NCBI_GenBank
Match: EWM26329.1 (hydroxyacyl-coenzyme a mitochondrial precursor [Nannochloropsis gaditana])

HSP 1 Score: 521.9 bits (1343), Expect = 1.600e-144
Identity = 266/313 (84.98%), Postives = 287/313 (91.69%), Query Frame = 0

Query:   64 QQRRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDKIVKPVM 377
            QQRR+ A + + YDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQA ALESGKKR+D SL+K+LSKAVEKGKMT EAAE EK+ VE RITYSLD+ +L+D DLVVEAIVENLDVKIPFYK LGSLVKP AIFGSNTSSLKI DFA PSGRP++FVGLHFFNPVQLMRLVEIV+L +TE  VFE V+GYV RIGKTAVTC+DTPGFIVNRLLVPALVQAMLMKERG+ASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYP+EPAF+VPSSLR LV  GKLGRKSGEGFY+W+GDK VKP M
Sbjct:   50 QQRRTLAATPH-YDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAPALESGKKRIDKSLSKILSKAVEKGKMTLEAAEKEKEKVERRITYSLDLAALRDADLVVEAIVENLDVKIPFYKQLGSLVKPTAIFGSNTSSLKIGDFAAPSGRPQQFVGLHFFNPVQLMRLVEIVRLHETEPAVFETVRGYVARIGKTAVTCQDTPGFIVNRLLVPALVQAMLMKERGEASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPNEPAFIVPSSLRALVQGGKLGRKSGEGFYVWEGDKKVKPAM 361

[Close]

BLAST of NO06G03390 vs. NCBI_GenBank
Match: GAY06457.1 (hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Pythium insidiosum])

HSP 1 Score: 392.5 bits (1007), Expect = 1.500e-105
Identity = 197/347 (56.77%), Postives = 262/347 (75.50%), Query Frame = 0

Query:   28 LSFASPS----YFSPAAALHLRRATVVSVSSSSLQPSPNKQQRRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDK 371
            L F+S S    +FS  A   + R ++ S+++++ +P+ +    RSFA S++  + KKVG+VGLGLMGHGI   +AQAG++V+A++     L++G KR+++SL+KL ++ V+KG +T+E A+   +   GRIT +   + L D DLV+EAI+EN+D+K  FY  LG++VKP+A+F SNTSSL ISDFA  SGRPEK VGLHFFNPVQ+M+LVE+V+ D T+  VFEA + +V  IGK  V+CKDTPGFIVNRLLVP L QA+ M ERGDA+ EDIDV+MQ GAGHPMGP+ LADY+GLDTCLFILEGWV+ +P+EPAF VP  LR  V +GKLGRK+GEGF+ W GDK
Sbjct:  178 LGFSSGSQQLRFFSSQATAVMLRTSLRSIAAATRRPASSLLVARSFASSASDIEFKKVGMVGLGLMGHGIAQTAAQAGFQVVALDMNQKGLDAGMKRIESSLSKLQARHVKKGAITEEQAQQAVQETLGRITPTTKTEDLADCDLVIEAIIENVDIKKDFYAKLGAIVKPSAVFASNTSSLAISDFAGSSGRPEKMVGLHFFNPVQIMKLVEVVRTDDTDAAVFEACKNWVHAIGKHPVSCKDTPGFIVNRLLVPYLAQAIAMFERGDATKEDIDVSMQFGAGHPMGPITLADYVGLDTCLFILEGWVRDHPNEPAFFVPDVLRQKVKEGKLGRKTGEGFFKWDGDK 524

[Close]

BLAST of NO06G03390 vs. NCBI_GenBank
Match: GAY04010.1 (hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Pythium insidiosum])

HSP 1 Score: 392.5 bits (1007), Expect = 1.500e-105
Identity = 197/347 (56.77%), Postives = 262/347 (75.50%), Query Frame = 0

Query:   28 LSFASPS----YFSPAAALHLRRATVVSVSSSSLQPSPNKQQRRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDK 371
            L F+S S    +FS  A   + R ++ S+++++ +P+ +    RSFA S++  + KKVG+VGLGLMGHGI   +AQAG++V+A++     L++G KR+++SL+KL ++ V+KG +T+E A+   +   GRIT +   + L D DLV+EAI+EN+D+K  FY  LG++VKP+A+F SNTSSL ISDFA  SGRPEK VGLHFFNPVQ+M+LVE+V+ D T+  VFEA + +V  IGK  V+CKDTPGFIVNRLLVP L QA+ M ERGDA+ EDIDV+MQ GAGHPMGP+ LADY+GLDTCLFILEGWV+ +P+EPAF VP  LR  V +GKLGRK+GEGF+ W GDK
Sbjct:  140 LGFSSGSQQLRFFSSQATAVMLRTSLRSIAAATRRPASSLLVARSFASSASDIEFKKVGMVGLGLMGHGIAQTAAQAGFQVVALDMNQKGLDAGMKRIESSLSKLQARHVKKGAITEEQAQQAVQETLGRITPTTKTEDLADCDLVIEAIIENVDIKKDFYAKLGAIVKPSAVFASNTSSLAISDFAGSSGRPEKMVGLHFFNPVQIMKLVEVVRTDDTDAAVFEACKNWVHAIGKHPVSCKDTPGFIVNRLLVPYLAQAIAMFERGDATKEDIDVSMQFGAGHPMGPITLADYVGLDTCLFILEGWVRDHPNEPAFFVPDVLRQKVKEGKLGRKTGEGFFKWDGDK 486

[Close]

BLAST of NO06G03390 vs. NCBI_GenBank
Match: XP_008864050.1 (hypothetical protein H310_02343 [Aphanomyces invadans] >ETW07957.1 hypothetical protein H310_02343 [Aphanomyces invadans])

HSP 1 Score: 369.4 bits (947), Expect = 1.300e-98
Identity = 182/305 (59.67%), Postives = 237/305 (77.70%), Query Frame = 0

Query:   66 RRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDK 371
            RR+F+ S    +I +VG+VG+GLMGHGI   +A AGY+VIAV++    L++G KR++ SL KL ++ ++KG++T E A+    ++ GRI  ++D K L   DLV+EAI+E+ D+K  FYK LG +V+P+ I  SNTSSL I DFA  SGR +K VGLHFFNPVQLM+LVE+VK D T+  VF+  + +   +GKT V+CKDTPGFIVNRLLVP LVQA+ + ERGDAS+EDID++MQLGAGHPMGP+ LADYIGLDT LFILEGWVKKYP+EP+F+VPS L+ +V+ GKLGRK+G+GFY W GDK
Sbjct:    7 RRAFS-SKMVPEITRVGMVGMGLMGHGIAQTAAMAGYDVIAVDSNQKGLDAGLKRIEGSLEKLHARQIKKGELTDEQAKDSFASIMGRIHGTIDKKELAPCDLVIEAIIEDTDIKKSFYKELGQIVQPSGILASNTSSLPIGDFAGSSGRADKVVGLHFFNPVQLMKLVEVVKTDVTDPNVFDLAKRWTLSVGKTPVSCKDTPGFIVNRLLVPNLVQALQLLERGDASMEDIDISMQLGAGHPMGPITLADYIGLDTILFILEGWVKKYPNEPSFVVPSILKQMVNDGKLGRKTGQGFYKWNGDK 310

[Close]

BLAST of NO06G03390 vs. NCBI_GenBank
Match: OWZ09008.1 (Hydroxyacyl-coenzyme A dehydrogenase [Phytophthora megakarya])

HSP 1 Score: 368.6 bits (945), Expect = 2.300e-98
Identity = 187/317 (58.99%), Postives = 240/317 (75.71%), Query Frame = 0

Query:   54 SSSLQPSPNKQQRRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDK 371
            S SL  S      R+ A S++   I+KVG+VGLGLMGHGI   +A AG++V+A++A    LESG KR++ SL KLLS+ V+KG +T++ A+ +  A  GRIT + +++ L D DLV+EAIVEN++VK  FY +LG + KP+AI  SNTSSL ISDFA  SGR  + VGLHFFNPVQLM+LVE+V+ D T+  +F+A + +V  IGK  V+CKDTPGFIVNRLLVP L QA+ + ERGDA+ EDIDV+MQ GAGHPMGP+ LADY+GLDT LFILEGWV+ +P+EPAF VP  +R  V++GKLGRK+GEGFY W GDK
Sbjct:    5 SRSLPHSTPSLLARALATSASDVKIQKVGMVGLGLMGHGIAQTAATAGFDVVALDANPQGLESGMKRIEGSLQKLLSRGVKKGTLTQQQADDQAAATLGRITPTTELQGLADCDLVIEAIVENVEVKKEFYANLGRVAKPSAILASNTSSLAISDFAGSSGRASQVVGLHFFNPVQLMKLVEVVRTDATDPKIFDACKQWVLDIGKHPVSCKDTPGFIVNRLLVPYLAQAISLYERGDATKEDIDVSMQFGAGHPMGPITLADYVGLDTTLFILEGWVRDHPNEPAFFVPEIVRKKVAEGKLGRKTGEGFYKWDGDK 321

[Close]

BLAST of NO06G03390 vs. NCBI_GenBank
Match: POM68581.1 (Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Phytophthora palmivora var. palmivora])

HSP 1 Score: 368.6 bits (945), Expect = 2.300e-98
Identity = 187/315 (59.37%), Postives = 237/315 (75.24%), Query Frame = 0

Query:   56 SLQPSPNKQQRRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDK 371
            SL  S      R+ A S N   I+KVG+VGLGLMGHGI   +A AG++V+A++A    LESG KR++ SL KLLS+ V+KG +T++ A+ +  A   RIT + D+  L D DLV+EAIVEN++VK  FY +LG + KP+AI  SNTSSL ISDFA  SGR  + VGLHFFNPVQLM+LVE+V+ D T+  +F+A + +V  IGK  V+CKDTPGFIVNRLLVP L QA+ + ERGDA+ EDIDV+MQ GAGHPMGP+ LADY+GLDT LFILEGWV+ +P+EPAF VP  +R  V++GKLGRK+GEGFY W+GDK
Sbjct:    8 SLPRSTPSLLTRALATSVNDIKIQKVGMVGLGLMGHGIAQTAATAGFDVVALDANPKGLESGMKRIEGSLDKLLSRGVKKGTITQQEADEQAAATLARITPTTDLDGLADCDLVIEAIVENVEVKKEFYANLGKVAKPSAILASNTSSLAISDFAGSSGRASQVVGLHFFNPVQLMKLVEVVRTDATDPKIFDACKQWVLDIGKHPVSCKDTPGFIVNRLLVPYLAQAISLYERGDATKEDIDVSMQFGAGHPMGPITLADYVGLDTTLFILEGWVRDHPNEPAFFVPEIVRKKVAEGKLGRKTGEGFYKWEGDK 322

[Close]

BLAST of NO06G03390 vs. NCBI_GenBank
Match: XP_009536913.1 (hypothetical protein PHYSODRAFT_565338 [Phytophthora sojae] >EGZ07347.1 hypothetical protein PHYSODRAFT_565338 [Phytophthora sojae])

HSP 1 Score: 367.9 bits (943), Expect = 3.900e-98
Identity = 184/311 (59.16%), Postives = 236/311 (75.88%), Query Frame = 0

Query:   60 SPNKQQRRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDK 371
            +P+    R+ A S+    I+KVG+VGLGLMGHGI   +A AG++V+A++A    LESG KR++ SL KLLS+ V+KG +T++ A+ +  A   RIT + ++  L D DLV+EAIVEN++VK  FY +LG + KP+AI  SNTSSL ISDFA  SGR  + VGLHFFNPVQLM+LVE+V+ D T+  +F+A + +V  IGK  V+CKDTPGFIVNRLLVP L QA+ + ERGDAS EDIDV+MQ GAGHPMGP+ LADY+GLDT LFILEGWV+ +P+EPAF VP  +R  V++GKLGRK+GEGFY W GDK
Sbjct:   13 APSLLLARALATSAGDVKIQKVGMVGLGLMGHGIAQTAASAGFDVVALDANPKGLESGMKRIEGSLAKLLSRGVKKGTLTQQQADEQAAATLARITPTTELDGLADCDLVIEAIVENVEVKKEFYANLGKVAKPSAILASNTSSLAISDFAGSSGRASQVVGLHFFNPVQLMKLVEVVRTDATDPKIFDACKQWVLDIGKHPVSCKDTPGFIVNRLLVPYLAQAISLYERGDASKEDIDVSMQFGAGHPMGPITLADYVGLDTTLFILEGWVRDHPNEPAFFVPEIVRKKVAEGKLGRKTGEGFYKWDGDK 323

[Close]

BLAST of NO06G03390 vs. NCBI_GenBank
Match: XP_009824310.1 (hypothetical protein H257_02399 [Aphanomyces astaci] >ETV85838.1 hypothetical protein H257_02399 [Aphanomyces astaci])

HSP 1 Score: 367.1 bits (941), Expect = 6.600e-98
Identity = 181/307 (58.96%), Postives = 236/307 (76.87%), Query Frame = 0

Query:   66 RRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDKIV 373
            RR+F+ S    +I +VG+VG+GLMGHGI   +A AGY+VIAV+     L++G KR++ SL K+ ++ ++KG MT++ A+    ++ GRI  ++D K L   DLV+EAI+E++D+K  FYK LG +VKP+ I  SNTSSL I DFA  SGR +K VGLHFFNPVQLM+LVE+VK D T+  VF+  + +   +GKT V+CKDTPGFIVNRLLVP LVQA+ + ERGDAS+EDID++MQLGAGHPMGP+ LADYIGLDT LFILEGWV+KYP EP+F+VP+ L+ +V  GKLGRK+G+GFY W GDK V
Sbjct:    6 RRAFS-SKTIPEITRVGMVGMGLMGHGIAQTAATAGYDVIAVDTNQKGLDAGLKRIEGSLEKIHARQIKKGDMTEDQAKDLFASIMGRIHGTIDKKDLAPCDLVIEAIIEDMDIKKSFYKELGQIVKPSGILASNTSSLPIGDFAGSSGRADKVVGLHFFNPVQLMKLVEVVKTDLTDPNVFDVAKRWAVSVGKTPVSCKDTPGFIVNRLLVPNLVQALQLLERGDASMEDIDISMQLGAGHPMGPITLADYIGLDTILFILEGWVQKYPTEPSFVVPTILKQMVQDGKLGRKAGQGFYKWNGDKRV 311

[Close]

BLAST of NO06G03390 vs. NCBI_GenBank
Match: POM57946.1 (Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Phytophthora palmivora var. palmivora])

HSP 1 Score: 366.7 bits (940), Expect = 8.700e-98
Identity = 186/315 (59.05%), Postives = 237/315 (75.24%), Query Frame = 0

Query:   56 SLQPSPNKQQRRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDK 371
            SL  S      R+ A S +   I+KVG+VGLGLMGHGI   +A AG++V+A++A    LESG KR++ SL KLLS+ V+KG +T++ A+ +  A   RIT + D+  L D DLV+EAIVEN++VK  FY +LG + KP+AI  SNTSSL ISDFA  SGR  + VGLHFFNPVQLM+LVE+V+ D T+  +F+A + +V  IGK  V+CKDTPGFIVNRLLVP L QA+ + ERGDA+ EDIDV+MQ GAGHPMGP+ LADY+GLDT LFILEGWV+ +P+EPAF VP  +R  V++GKLGRK+GEGFY W+GDK
Sbjct:    8 SLPRSTPSLLTRALATSVDDIKIQKVGMVGLGLMGHGIAQTAATAGFDVVALDANPKGLESGMKRIEGSLDKLLSRGVKKGTITQQEADEQAAATLARITPTTDLDGLADCDLVIEAIVENVEVKKEFYANLGKVAKPSAILASNTSSLAISDFAGSSGRASQVVGLHFFNPVQLMKLVEVVRTDATDPKIFDACKQWVLDIGKHPVSCKDTPGFIVNRLLVPYLAQAISLYERGDATKEDIDVSMQFGAGHPMGPITLADYVGLDTTLFILEGWVRDHPNEPAFFVPEIVRKKVAEGKLGRKTGEGFYKWEGDK 322

[Close]

BLAST of NO06G03390 vs. NCBI_GenBank
Match: OQR90401.1 (hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 364.8 bits (935), Expect = 3.300e-97
Identity = 177/294 (60.20%), Postives = 226/294 (76.87%), Query Frame = 0

Query:   77 DIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDK 371
            +I +VG+VGLGLMGHGI   +A AGY+V+A++    +L++G  R++ SL K+ ++ V+KG+ T E A+ E  AV GRI  S+  K L + DLV+EAI+E++D+K  FYK LG +VKP+ I  SNTSSL I DFA  SGRPEK VGLHFFNPVQLM+LVE+++ D T+  VF+  + +   +GKT V+CKDTPGFIVNRLLVP L QA+ M ERG+A++EDID++MQLGAGHPMGPL LADY+GLDT LFIL+GW KKYP+EP F VP  LR  V +GKLGRK+GEGFY W GDK
Sbjct:   16 EITRVGMVGLGLMGHGIAQTAAMAGYDVVALDVTQKSLDAGLARIEGSLEKIGARHVKKGEWTAEQAKDEFAAVMGRINGSIVKKDLAECDLVIEAIIEDVDIKKTFYKELGGIVKPSGILASNTSSLSIGDFAGSSGRPEKVVGLHFFNPVQLMKLVEVIRTDATDAAVFDVSKRWAASLGKTPVSCKDTPGFIVNRLLVPNLAQALFMLERGEATMEDIDISMQLGAGHPMGPLTLADYVGLDTILFILDGWTKKYPNEPVFQVPEILRQKVKEGKLGRKTGEGFYKWNGDK 309

The following BLAST results are available for this feature:

BLAST of NO06G03390 vs. NCBI_GenBank

BLAST of NO06G03390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26329.1	1.600e-144	84.98	hydroxyacyl-coenzyme a mitochondrial precursor [Na...	[more]
GAY06457.1	1.500e-105	56.77	hydroxyacyl-coenzyme A dehydrogenase, mitochondria...	[more]
GAY04010.1	1.500e-105	56.77	hydroxyacyl-coenzyme A dehydrogenase, mitochondria...	[more]
XP_008864050.1	1.300e-98	59.67	hypothetical protein H310_02343 [Aphanomyces invad...	[more]
OWZ09008.1	2.300e-98	58.99	Hydroxyacyl-coenzyme A dehydrogenase [Phytophthora...	[more]
POM68581.1	2.300e-98	59.37	Hydroxyacyl-coenzyme A dehydrogenase, mitochondria...	[more]
XP_009536913.1	3.900e-98	59.16	hypothetical protein PHYSODRAFT_565338 [Phytophtho...	[more]
XP_009824310.1	6.600e-98	58.96	hypothetical protein H257_02399 [Aphanomyces astac...	[more]
POM57946.1	8.700e-98	59.05	Hydroxyacyl-coenzyme A dehydrogenase, mitochondria...	[more]
OQR90401.1	3.300e-97	60.20	hydroxyacyl-coenzyme A dehydrogenase, mitochondria...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR029	ncniR029	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR028	ncniR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000139	NSK000139	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G03390.1	NO06G03390.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597644	gene_6663	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100078g17	gene4196	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G03390.1	NO06G03390.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G03390 ID=NO06G03390|Name=NO06G03390|organism=Nannochloropsis oceanica|type=gene|length=2709bp
GGGGGGGGGGGAATAGCGTGGGTGAAGGGCGCAGAAATCAGGCACGGCTC
GTAGGCAAGATGGGAGAACTCGCGGATGCGGAGAACAAGTCTTGGCGAGT
TGACAACGGCCCAAGGCAACCGACAAGACAAGGCCAGAACACTCGCCACA
GCGTCTTTATGTCTGTGTGGAAGGGCTGTGTGTAAGGCGTGAAGGGATGA
TGGCGTGAGAGAAATCGGTTGTGATGGGCATGGCTAGGCCCGCACGGAGT
AAAAGGCATGAGGAGAAAGAATCGGGAACTGTGATGATGCGCCGCTTGCG
GCCTCCGTCCTCTCAAGTGCCATGTCTAAGCACACTAAAGCACGCTACGC
CCACTCGTACACAGGAAAGAAATACCACAGCACCATGTTCTTGCGCGCAT
GCCTTTCCTTCGCTTCACCATCCTACTTCTCCCCCGCCGCTGCCCTCCAC
CTGCGGCGTGCCACCGTCGTCTCGGTCTCCTCCTCTTCCCTGCAACCGTC
TCCCAACAAGCAGCAACGTCGGTCCTTTGCCGGTTCGTCGAATAAATACG
ACATCAAGAAGGTGGGCGTTGTGGGCTTGGGACTGATGGGACATGGTATT
GGCCTAGTGAGCGCACAGGCGGGGTATGAAGTGATTGCCGTCGAAGCGCA
AGCTGCGGCGTTGGAGTCGGGCAAGAAGCGGATGGACGCCTCGTTGACCA
AGCTTTTAAGCAAGGCCGTGGAGAAGGGAAAGATGACAAAGGAGGCGGCA
GAATTAGAGAAAAAAGCGGTTGAGGGACGGATAACTTATTCCTTGGACGT
GAAGTCGTTGAAAGATGTTGATTTGGTGGTGGAGGCCATCGTGGAGAATT
TGGgtgaggaaactaacatcatggtgggaagaaagttggatggagagtcc
tgggatggctaagtggggcatttgcatgcatttttccggctgcaccattc
catgctctttcttaaataacgcaaaatgtgccgcgcagtcattcactaac
tctctcttcccccctccctcccctccttcccttccaagACGTCAAAATCC
CCTTCTACAAGCATCTAGGCAGTCTGGTCAAGCCCAATGCCATCTTTGGG
AGCAATACCTCTTCTTTAAAAATAAGTGATTTTGCTGATCCTTCCGGTCG
ACCCGAAAAATTCGTGGGATTACATTTCTTTAACCCTGTGCAACTGATGC
GCTTGGTGGAGATCGTAAAGCTCGACAAGACGGAGCAGGGAGTGTTTGAA
GCCGTGCAGGGGTACGTGAAACGAATTGGCAAGACAGCTGTGACATGTAA
GGACACTCCGGGATTTATTGTCAACAGgtaaggagggggagggagggagg
gagggagggagaacgagagcgcaacgagcacaacaacgccctgatatctt
tcttctcggcacaacacgtagatttgtttcttgagtgaagttgttatgga
aatgttaagtgatacatttttgcgtgaactttttcttattcatcaaccaa
gtctgagtcaaagaaatgtcatctggcggattcaaccctcctccctccct
cgtttcctctttcccttcctcctttctaggtaaatcatccctgccccagt
gcaagcgctgttgatgaaggagcgaggagaagcaagcaatcacgcgactt
aaagcttcctctgtccctccctcctcccgaccccctctcaatccctccct
cggcacaacctcctacaaaacagATTGTTGGTGCCGGCCCTGGTGCAAGC
AATGCTCATGAAGGAGCGAGGGGACGCAAGCGTGGAAGACATTGATGTGG
CTATGCAGCTGGGCGCGGGTCACCCTATGGGGCCATTGCATCTGgtaggg
agggagggaggagagggaggaatgggaaggagggagggagggaaggaagg
aaggtggtaagaaggtatatttctcgcgggagcacgtcatgtgcagagag
tcgtacgccgccctttcaaccctccctccctcccttccttccttcctctc
tcccttcctttttcagGCGGACTACATCGGCCTCGACACCTGCCTCTTCA
TTCTCGAGGGCTGGGTCAAAAAATACCCGGACGAGCCTGCCTTTCTCGTG
CCGTCCTCCCTGCGTACCTTGGTTAGCCAAGGCAAGCTGGGGAGGAAGAG
CGGGGAGGGCTTCTACATGTGGCAGGGGGATAAAATAGTAAAGCCGGTGA
TGTAAGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATG
GCGGAGGTGGTCGCTATTTGTACTATTGGGAAGGCGAACTTCATAAAGAA
GGCTGGGAGTAGAGGTGAGGGGAGATAAGGACGGCTCACGACGAGTAACA
GGTGAAACAATTTTGCAGGAGACTTCTGGATTGGGAGTTGATGATCGAAC
GGGTAAGGGAAGCTTGAATGATGTAGAAGACACGGAAGGTAGAGGCCCTA
GGTGTGAAAGAGGAAATTATCAGTTATATTTATTATCAAGACAGTGTGAC
ATTGGCCTCATGCTTCGTGAGTTTGTATGGAAGGGAAGTGGAGTGTTCTG
TTGAGGGAGGGGGGGGCTGAGCCGGAGCTGAAGCGCTGAGCACGCCTCTT
GCCTGGTTTTGTGGTGGTGATTTTAATGTACCGATGCGTTCATGTGTTTT
CAACGATTATTTTTGTTGCTCCCTTCGGGGTTGAGGGGTAGTTTAGTAAA
ACAGTGCAT

protein sequence of NO06G03390.1

>NO06G03390.1-protein ID=NO06G03390.1-protein|Name=NO06G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MSKHTKARYAHSYTGKKYHSTMFLRACLSFASPSYFSPAAALHLRRATVV
SVSSSSLQPSPNKQQRRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQA
GYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAV
EGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSN
TSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAV
QGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVA
MQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLV
SQGKLGRKSGEGFYMWQGDKIVKPVM*

Synonyms

Publications