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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:936809..939517 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03390.1 vs.
Match: EWM26329.1 (hydroxyacyl-coenzyme a mitochondrial precursor [Nannochloropsis gaditana]) HSP 1 Score: 521.9 bits (1343), Expect = 1.600e-144 Identity = 266/313 (84.98%), Postives = 287/313 (91.69%), Query Frame = 0
Query: 64 QQRRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDKIVKPVM 377
QQRR+ A + + YDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQA ALESGKKR+D SL+K+LSKAVEKGKMT EAAE EK+ VE RITYSLD+ +L+D DLVVEAIVENLDVKIPFYK LGSLVKP AIFGSNTSSLKI DFA PSGRP++FVGLHFFNPVQLMRLVEIV+L +TE VFE V+GYV RIGKTAVTC+DTPGFIVNRLLVPALVQAMLMKERG+ASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYP+EPAF+VPSSLR LV GKLGRKSGEGFY+W+GDK VKP M
Sbjct: 50 QQRRTLAATPH-YDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAPALESGKKRIDKSLSKILSKAVEKGKMTLEAAEKEKEKVERRITYSLDLAALRDADLVVEAIVENLDVKIPFYKQLGSLVKPTAIFGSNTSSLKIGDFAAPSGRPQQFVGLHFFNPVQLMRLVEIVRLHETEPAVFETVRGYVARIGKTAVTCQDTPGFIVNRLLVPALVQAMLMKERGEASVEDIDVAMQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPNEPAFIVPSSLRALVQGGKLGRKSGEGFYVWEGDKKVKPAM 361
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03390.1 ID=NO06G03390.1|Name=NO06G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp
GGGGGGGGGGGAATAGCGTGGGTGAAGGGCGCAGAAATCAGGCACGGCTC
GTAGGCAAGATGGGAGAACTCGCGGATGCGGAGAACAAGTCTTGGCGAGT
TGACAACGGCCCAAGGCAACCGACAAGACAAGGCCAGAACACTCGCCACA
GCGTCTTTATGTCTGTGTGGAAGGGCTGTGTGTAAGGCGTGAAGGGATGA
TGGCGTGAGAGAAATCGGTTGTGATGGGCATGGCTAGGCCCGCACGGAGT
AAAAGGCATGAGGAGAAAGAATCGGGAACTGTGATGATGCGCCGCTTGCG
GCCTCCGTCCTCTCAAGTGCCATGTCTAAGCACACTAAAGCACGCTACGC
CCACTCGTACACAGGAAAGAAATACCACAGCACCATGTTCTTGCGCGCAT
GCCTTTCCTTCGCTTCACCATCCTACTTCTCCCCCGCCGCTGCCCTCCAC
CTGCGGCGTGCCACCGTCGTCTCGGTCTCCTCCTCTTCCCTGCAACCGTC
TCCCAACAAGCAGCAACGTCGGTCCTTTGCCGGTTCGTCGAATAAATACG
ACATCAAGAAGGTGGGCGTTGTGGGCTTGGGACTGATGGGACATGGTATT
GGCCTAGTGAGCGCACAGGCGGGGTATGAAGTGATTGCCGTCGAAGCGCA
AGCTGCGGCGTTGGAGTCGGGCAAGAAGCGGATGGACGCCTCGTTGACCA
AGCTTTTAAGCAAGGCCGTGGAGAAGGGAAAGATGACAAAGGAGGCGGCA
GAATTAGAGAAAAAAGCGGTTGAGGGACGGATAACTTATTCCTTGGACGT
GAAGTCGTTGAAAGATGTTGATTTGGTGGTGGAGGCCATCGTGGAGAATT
TGGACGTCAAAATCCCCTTCTACAAGCATCTAGGCAGTCTGGTCAAGCCC
AATGCCATCTTTGGGAGCAATACCTCTTCTTTAAAAATAAGTGATTTTGC
TGATCCTTCCGGTCGACCCGAAAAATTCGTGGGATTACATTTCTTTAACC
CTGTGCAACTGATGCGCTTGGTGGAGATCGTAAAGCTCGACAAGACGGAG
CAGGGAGTGTTTGAAGCCGTGCAGGGGTACGTGAAACGAATTGGCAAGAC
AGCTGTGACATGTAAGGACACTCCGGGATTTATTGTCAACAGATTGTTGG
TGCCGGCCCTGGTGCAAGCAATGCTCATGAAGGAGCGAGGGGACGCAAGC
GTGGAAGACATTGATGTGGCTATGCAGCTGGGCGCGGGTCACCCTATGGG
GCCATTGCATCTGGCGGACTACATCGGCCTCGACACCTGCCTCTTCATTC
TCGAGGGCTGGGTCAAAAAATACCCGGACGAGCCTGCCTTTCTCGTGCCG
TCCTCCCTGCGTACCTTGGTTAGCCAAGGCAAGCTGGGGAGGAAGAGCGG
GGAGGGCTTCTACATGTGGCAGGGGGATAAAATAGTAAAGCCGGTGATGT
AAGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGCG
GAGGTGGTCGCTATTTGTACTATTGGGAAGGCGAACTTCATAAAGAAGGC
TGGGAGTAGAGGTGAGGGGAGATAAGGACGGCTCACGACGAGTAACAGGT
GAAACAATTTTGCAGGAGACTTCTGGATTGGGAGTTGATGATCGAACGGG
TAAGGGAAGCTTGAATGATGTAGAAGACACGGAAGGTAGAGGCCCTAGGT
GTGAAAGAGGAAATTATCAGTTATATTTATTATCAAGACAGTGTGACATT
GGCCTCATGCTTCGTGAGTTTGTATGGAAGGGAAGTGGAGTGTTCTGTTG
AGGGAGGGGGGGGCTGAGCCGGAGCTGAAGCGCTGAGCACGCCTCTTGCC
TGGTTTTGTGGTGGTGATTTTAATGTACCGATGCGTTCATGTGTTTTCAA
CGATTATTTTTGTTGCTCCCTTCGGGGTTGAGGGGTAGTTTAGTAAAACA
GTGCAT back to topprotein sequence of NO06G03390.1 >NO06G03390.1-protein ID=NO06G03390.1-protein|Name=NO06G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MSKHTKARYAHSYTGKKYHSTMFLRACLSFASPSYFSPAAALHLRRATVV
SVSSSSLQPSPNKQQRRSFAGSSNKYDIKKVGVVGLGLMGHGIGLVSAQA
GYEVIAVEAQAAALESGKKRMDASLTKLLSKAVEKGKMTKEAAELEKKAV
EGRITYSLDVKSLKDVDLVVEAIVENLDVKIPFYKHLGSLVKPNAIFGSN
TSSLKISDFADPSGRPEKFVGLHFFNPVQLMRLVEIVKLDKTEQGVFEAV
QGYVKRIGKTAVTCKDTPGFIVNRLLVPALVQAMLMKERGDASVEDIDVA
MQLGAGHPMGPLHLADYIGLDTCLFILEGWVKKYPDEPAFLVPSSLRTLV
SQGKLGRKSGEGFYMWQGDKIVKPVM* back to topmRNA from alignment at chr6:936809..939517- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03390.1 ID=NO06G03390.1|Name=NO06G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2709bp|location=Sequence derived from alignment at chr6:936809..939517- (Nannochloropsis oceanica)
GGGGGGGGGGGAATAGCGTGGGTGAAGGGCGCAGAAATCAGGCACGGCTC
GTAGGCAAGATGGGAGAACTCGCGGATGCGGAGAACAAGTCTTGGCGAGT
TGACAACGGCCCAAGGCAACCGACAAGACAAGGCCAGAACACTCGCCACA
GCGTCTTTATGTCTGTGTGGAAGGGCTGTGTGTAAGGCGTGAAGGGATGA
TGGCGTGAGAGAAATCGGTTGTGATGGGCATGGCTAGGCCCGCACGGAGT
AAAAGGCATGAGGAGAAAGAATCGGGAACTGTGATGATGCGCCGCTTGCG
GCCTCCGTCCTCTCAAGTGCCATGTCTAAGCACACTAAAGCACGCTACGC
CCACTCGTACACAGGAAAGAAATACCACAGCACCATGTTCTTGCGCGCAT
GCCTTTCCTTCGCTTCACCATCCTACTTCTCCCCCGCCGCTGCCCTCCAC
CTGCGGCGTGCCACCGTCGTCTCGGTCTCCTCCTCTTCCCTGCAACCGTC
TCCCAACAAGCAGCAACGTCGGTCCTTTGCCGGTTCGTCGAATAAATACG
ACATCAAGAAGGTGGGCGTTGTGGGCTTGGGACTGATGGGACATGGTATT
GGCCTAGTGAGCGCACAGGCGGGGTATGAAGTGATTGCCGTCGAAGCGCA
AGCTGCGGCGTTGGAGTCGGGCAAGAAGCGGATGGACGCCTCGTTGACCA
AGCTTTTAAGCAAGGCCGTGGAGAAGGGAAAGATGACAAAGGAGGCGGCA
GAATTAGAGAAAAAAGCGGTTGAGGGACGGATAACTTATTCCTTGGACGT
GAAGTCGTTGAAAGATGTTGATTTGGTGGTGGAGGCCATCGTGGAGAATT
TGGGTGAGGAAACTAACATCATGGTGGGAAGAAAGTTGGATGGAGAGTCC
TGGGATGGCTAAGTGGGGCATTTGCATGCATTTTTCCGGCTGCACCATTC
CATGCTCTTTCTTAAATAACGCAAAATGTGCCGCGCAGTCATTCACTAAC
TCTCTCTTCCCCCCTCCCTCCCCTCCTTCCCTTCCAAGACGTCAAAATCC
CCTTCTACAAGCATCTAGGCAGTCTGGTCAAGCCCAATGCCATCTTTGGG
AGCAATACCTCTTCTTTAAAAATAAGTGATTTTGCTGATCCTTCCGGTCG
ACCCGAAAAATTCGTGGGATTACATTTCTTTAACCCTGTGCAACTGATGC
GCTTGGTGGAGATCGTAAAGCTCGACAAGACGGAGCAGGGAGTGTTTGAA
GCCGTGCAGGGGTACGTGAAACGAATTGGCAAGACAGCTGTGACATGTAA
GGACACTCCGGGATTTATTGTCAACAGGTAAGGAGGGGGAGGGAGGGAGG
GAGGGAGGGAGAACGAGAGCGCAACGAGCACAACAACGCCCTGATATCTT
TCTTCTCGGCACAACACGTAGATTTGTTTCTTGAGTGAAGTTGTTATGGA
AATGTTAAGTGATACATTTTTGCGTGAACTTTTTCTTATTCATCAACCAA
GTCTGAGTCAAAGAAATGTCATCTGGCGGATTCAACCCTCCTCCCTCCCT
CGTTTCCTCTTTCCCTTCCTCCTTTCTAGGTAAATCATCCCTGCCCCAGT
GCAAGCGCTGTTGATGAAGGAGCGAGGAGAAGCAAGCAATCACGCGACTT
AAAGCTTCCTCTGTCCCTCCCTCCTCCCGACCCCCTCTCAATCCCTCCCT
CGGCACAACCTCCTACAAAACAGATTGTTGGTGCCGGCCCTGGTGCAAGC
AATGCTCATGAAGGAGCGAGGGGACGCAAGCGTGGAAGACATTGATGTGG
CTATGCAGCTGGGCGCGGGTCACCCTATGGGGCCATTGCATCTGGTAGGG
AGGGAGGGAGGAGAGGGAGGAATGGGAAGGAGGGAGGGAGGGAAGGAAGG
AAGGTGGTAAGAAGGTATATTTCTCGCGGGAGCACGTCATGTGCAGAGAG
TCGTACGCCGCCCTTTCAACCCTCCCTCCCTCCCTTCCTTCCTTCCTCTC
TCCCTTCCTTTTTCAGGCGGACTACATCGGCCTCGACACCTGCCTCTTCA
TTCTCGAGGGCTGGGTCAAAAAATACCCGGACGAGCCTGCCTTTCTCGTG
CCGTCCTCCCTGCGTACCTTGGTTAGCCAAGGCAAGCTGGGGAGGAAGAG
CGGGGAGGGCTTCTACATGTGGCAGGGGGATAAAATAGTAAAGCCGGTGA
TGTAAGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATG
GCGGAGGTGGTCGCTATTTGTACTATTGGGAAGGCGAACTTCATAAAGAA
GGCTGGGAGTAGAGGTGAGGGGAGATAAGGACGGCTCACGACGAGTAACA
GGTGAAACAATTTTGCAGGAGACTTCTGGATTGGGAGTTGATGATCGAAC
GGGTAAGGGAAGCTTGAATGATGTAGAAGACACGGAAGGTAGAGGCCCTA
GGTGTGAAAGAGGAAATTATCAGTTATATTTATTATCAAGACAGTGTGAC
ATTGGCCTCATGCTTCGTGAGTTTGTATGGAAGGGAAGTGGAGTGTTCTG
TTGAGGGAGGGGGGGGCTGAGCCGGAGCTGAAGCGCTGAGCACGCCTCTT
GCCTGGTTTTGTGGTGGTGATTTTAATGTACCGATGCGTTCATGTGTTTT
CAACGATTATTTTTGTTGCTCCCTTCGGGGTTGAGGGGTAGTTTAGTAAA
ACAGTGCAT back to topCoding sequence (CDS) from alignment at chr6:936809..939517- >NO06G03390.1 ID=NO06G03390.1|Name=NO06G03390.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr6:936809..939517- (Nannochloropsis oceanica)
ATGTCTAAGCACACTAAAGCACGCTACGCCCACTCGTACACAGGAAAGAA
ATACCACAGCACCATGTTCTTGCGCGCATGCCTTTCCTTCGCTTCACCAT
CCTACTTCTCCCCCGCCGCTGCCCTCCACCTGCGGCGTGCCACCGTCGTC
TCGGTCTCCTCCTCTTCCCTGCAACCGTCTCCCAACAAGCAGCAACGTCG
GTCCTTTGCCGGTTCGTCGAATAAATACGACATCAAGAAGGTGGGCGTTG
TGGGCTTGGGACTGATGGGACATGGTATTGGCCTAGTGAGCGCACAGGCG
GGGTATGAAGTGATTGCCGTCGAAGCGCAAGCTGCGGCGTTGGAGTCGGG
CAAGAAGCGGATGGACGCCTCGTTGACCAAGCTTTTAAGCAAGGCCGTGG
AGAAGGGAAAGATGACAAAGGAGGCGGCAGAATTAGAGAAAAAAGCGGTT
GAGGGACGGATAACTTATTCCTTGGACGTGAAGTCGTTGAAAGATGTTGA
TTTGGTGGTGGAGGCCATCGTGGAGAATTTGGACGTCAAAATCCCCTTCT
ACAAGCATCTAGGCAGTCTGGTCAAGCCCAATGCCATCTTTGGGAGCAAT
ACCTCTTCTTTAAAAATAAGTGATTTTGCTGATCCTTCCGGTCGACCCGA
AAAATTCGTGGGATTACATTTCTTTAACCCTGTGCAACTGATGCGCTTGG
TGGAGATCGTAAAGCTCGACAAGACGGAGCAGGGAGTGTTTGAAGCCGTG
CAGGGGTACGTGAAACGAATTGGCAAGACAGCTGTGACATGTAAGGACAC
TCCGGGATTTATTGTCAACAGATTGTTGGTGCCGGCCCTGGTGCAAGCAA
TGCTCATGAAGGAGCGAGGGGACGCAAGCGTGGAAGACATTGATGTGGCT
ATGCAGCTGGGCGCGGGTCACCCTATGGGGCCATTGCATCTGGCGGACTA
CATCGGCCTCGACACCTGCCTCTTCATTCTCGAGGGCTGGGTCAAAAAAT
ACCCGGACGAGCCTGCCTTTCTCGTGCCGTCCTCCCTGCGTACCTTGGTT
AGCCAAGGCAAGCTGGGGAGGAAGAGCGGGGAGGGCTTCTACATGTGGCA
GGGGGATAAAATAGTAAAGCCGGTGATGTAA back to top
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