NO06G02480, NO06G02480 (gene) Nannochloropsis oceanica

Overview
NameNO06G02480
Unique NameNO06G02480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length638
Alignment locationchr6:700157..700794 +

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Properties
Property NameValue
DescriptionProtein FAM136A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:700157..700794 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008560DUF842_euk
Homology
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_005855298.1 (hypothetical protein NGA_2102500, partial [Nannochloropsis gaditana CCMP526] >EKU21063.1 hypothetical protein NGA_2102500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 263.5 bits (672), Expect = 3.900e-67
Identity = 123/143 (86.01%), Postives = 133/143 (93.01%), Query Frame = 0
Query:    1 MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKLAGECKRRL 144
            M+DPQARLQAAVT  MDKLDRAYIR+LSK AYSCMA CHD SSYTSQD+QQCVGACS GLQE+NALI NELQYFQNRLQRCQQSCEDEVRD QAK GGGKPDPSQQ KLQG+YDKCVGKC+D+HLPL+NAME+KLAGECK+RL
Sbjct:   16 MTDPQARLQAAVTTCMDKLDRAYIRKLSKNAYSCMAACHDHSSYTSQDVQQCVGACSTGLQEINALISNELQYFQNRLQRCQQSCEDEVRDTQAKAGGGKPDPSQQAKLQGIYDKCVGKCVDTHLPLVNAMEAKLAGECKKRL 158          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: EWM26263.1 (uncharacterized protein Naga_100145g7 [Nannochloropsis gaditana])

HSP 1 Score: 263.5 bits (672), Expect = 3.900e-67
Identity = 123/143 (86.01%), Postives = 133/143 (93.01%), Query Frame = 0
Query:    1 MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKLAGECKRRL 144
            M+DPQARLQAAVT  MDKLDRAYIR+LSK AYSCMA CHD SSYTSQD+QQCVGACS GLQE+NALI NELQYFQNRLQRCQQSCEDEVRD QAK GGGKPDPSQQ KLQG+YDKCVGKC+D+HLPL+NAME+KLAGECK+RL
Sbjct:    1 MTDPQARLQAAVTTCMDKLDRAYIRKLSKNAYSCMAACHDHSSYTSQDVQQCVGACSTGLQEINALISNELQYFQNRLQRCQQSCEDEVRDTQAKAGGGKPDPSQQAKLQGIYDKCVGKCVDTHLPLVNAMEAKLAGECKKRL 143          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: CCI45809.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 94.7 bits (234), Expect = 2.400e-16
Identity = 47/131 (35.88%), Postives = 73/131 (55.73%), Query Frame = 0
Query:    5 QARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            + ++  AV   M++LD  +IR   K+ Y C A C D  + +S+ IQ CV  C   +Q++  +I  ELQ FQNRLQRC   C+D  RD+       K D   Q+++Q   + CVG+C+D  +  I  ++ +L
Sbjct:    3 EQKINDAVHGMMEQLDVKFIRDFQKRGYLCSAQCFDDKTSSSEQIQNCVERCQFPMQQLQNVIQQELQSFQNRLQRCAMDCQDRARDSIPI--NEKVDHMTQSRMQKEMEACVGQCVDKQIQCIPTLQKRL 131          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_008879143.1 (hypothetical protein H310_13426 [Aphanomyces invadans] >ETV92179.1 hypothetical protein H310_13426 [Aphanomyces invadans])

HSP 1 Score: 94.0 bits (232), Expect = 4.100e-16
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = 0
Query:    5 QARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            +A +  AV   M+ LD+   R L K  Y C   C D    +S+ +Q C+  C   + +V   +  E+Q FQNRLQRC   C+D  +D+ +     +P  SQ    Q   +KCV KC+D H+ L+  ++ ++
Sbjct:    3 EADINQAVNKMMESLDKGTFRPLQKNGYVCSVKCFDNKDISSEQLQHCIERCQQPMAQVQNYLSQEMQSFQNRLQRCAMDCQDRAQDSLS----SQPSESQIATAQAGMEKCVSKCVDGHIKLLPTLKKRI 129          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_009836327.1 (hypothetical protein H257_11172 [Aphanomyces astaci] >ETV74221.1 hypothetical protein H257_11172 [Aphanomyces astaci])

HSP 1 Score: 93.6 bits (231), Expect = 5.400e-16
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 0
Query:    5 QARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            +A +  AV   M+ LD+   R L + AY C   C D    +++ +Q C+  C   + +V   +  E+Q FQNRLQRC   C+D  +D+ +     +P  SQ +  Q   +KCV KC+D H+ L+  ++ ++
Sbjct:    3 EADINQAVAKMMESLDKGTFRPLQRNAYVCSVKCFDNKDVSAEQLQHCIERCQQPMAQVQNYMSQEMQTFQNRLQRCAMECQDRAKDSLS----SQPSESQISAAQAGMEKCVSKCVDGHIKLLPTLKKRI 129          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: CCI45810.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 92.8 bits (229), Expect = 9.200e-16
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 0
Query:   16 MDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            M++LD  +IR   K+ Y C A C D  + +S+ IQ CV  C   +Q++  +I  ELQ FQNRLQRC   C+D  RD+       K D   Q+++Q   + CVG+C+D  +  I  ++ +L
Sbjct:    2 MEQLDVKFIRDFQKRGYLCSAQCFDDKTSSSEQIQNCVERCQFPMQQLQNVIQQELQSFQNRLQRCAMDCQDRARDSIPI--NEKVDHMTQSRMQKEMEACVGQCVDKQIQCIPTLQKRL 119          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_005094393.1 (PREDICTED: protein FAM136A-like [Aplysia californica])

HSP 1 Score: 92.4 bits (228), Expect = 1.200e-15
Identity = 43/142 (30.28%), Postives = 80/142 (56.34%), Query Frame = 0
Query:    1 MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKLAGECKRR 143
            M   QAR+Q A++  ++ LD   +R++    Y+C A C +   Y+  ++Q+C+  CS+ +    A + NE++ FQNRLQRC  SC+D+++D        +P  +   + +   ++CV +C DSH+ L+  +  K+    K++
Sbjct:    1 MDGAQARVQEAISKMVNTLDTGCLRKMQVDMYNCSAKCCENPKYSLDEVQKCIEDCSLDVNRAQAYLQNEIESFQNRLQRCAMSCQDKLKDQMPV----QPSDADVQRGRSSLEQCVVQCADSHVGLVPDLTKKMLETLKKK 138          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_002601822.1 (hypothetical protein BRAFLDRAFT_121154 [Branchiostoma floridae] >EEN57834.1 hypothetical protein BRAFLDRAFT_121154 [Branchiostoma floridae])

HSP 1 Score: 92.0 bits (227), Expect = 1.600e-15
Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 0
Query:    1 MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVG 119
            M+D QAR++ +V   +  ++R YIR++  K + C ATC D SS +  D+ +C+  CS  L     L+ NEL  FQ+RLQRC ++C+D+V+D   KM  G    + Q +L G+ ++C+G
Sbjct:    1 MADAQARVEESVKTLVTDIERDYIRKMQSKMFKCSATCCDDSSASMDDVGRCIDRCSQPLSRSQQLVTNELNEFQSRLQRCARTCQDQVQD---KMKAGN---TNQAELTGMMEQCIG 112          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_021375503.1 (protein FAM136A-like [Mizuhopecten yessoensis] >OWF55055.1 hypothetical protein KP79_PYT17038 [Mizuhopecten yessoensis])

HSP 1 Score: 92.0 bits (227), Expect = 1.600e-15
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 0
Query:    1 MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            M   QAR+Q AVTA  ++L++  IR +  + Y C   C +  SY+ +D   C+  CS  + ++   + +E++ +QNRLQRC   C+D+ RD         P      K++G  +KC+  C DSH+ L+  M  ++
Sbjct:    1 MEAAQARVQNAVTARSEELEKGQIRSVEAEMYKCNLKCVENQSYSVEDKDHCLERCSSRMMQIQKYVQSEMEAYQNRLQRCAMDCQDKARDKMP----ASPKDGVVDKIRGELEKCMINCADSHVELVGPMFKRM 131          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_009537213.1 (hypothetical protein PHYSODRAFT_431768, partial [Phytophthora sojae] >EGZ07647.1 hypothetical protein PHYSODRAFT_431768, partial [Phytophthora sojae])

HSP 1 Score: 90.5 bits (223), Expect = 4.600e-15
Identity = 47/140 (33.57%), Postives = 78/140 (55.71%), Query Frame = 0
Query:    6 ARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSH---LPLINAMESKLAGECKRR 143
            ++LQ AV   +D+LDR+ +R + +  Y C A   +  S++S  +   V  C M  Q++N  +  E+Q FQ+R+QR  Q C+D  +D+     GG P+ +Q  + Q   +KCV  C+D+H   LP INA   +   + K++
Sbjct:    4 SKLQDAVNKMVDRLDRSVLRGMQRDGYLCAAKVFENKSWSSDQLAAAVERCQMPTQQINQFMQQEMQNFQHRIQRGVQDCQDRAQDSLP--AGGAPNEAQIARAQKEMEKCVSSCVDAHIKLLPNINARIEQAVAQVKQQ 141          
The following BLAST results are available for this feature:
BLAST of NO06G02480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855298.13.900e-6786.01hypothetical protein NGA_2102500, partial [Nannoch... [more]
EWM26263.13.900e-6786.01uncharacterized protein Naga_100145g7 [Nannochloro... [more]
CCI45809.12.400e-1635.88unnamed protein product [Albugo candida][more]
XP_008879143.14.100e-1632.82hypothetical protein H310_13426 [Aphanomyces invad... [more]
XP_009836327.15.400e-1632.06hypothetical protein H257_11172 [Aphanomyces astac... [more]
CCI45810.19.200e-1637.50unnamed protein product [Albugo candida][more]
XP_005094393.11.200e-1530.28PREDICTED: protein FAM136A-like [Aplysia californi... [more]
XP_002601822.11.600e-1538.98hypothetical protein BRAFLDRAFT_121154 [Branchiost... [more]
XP_021375503.11.600e-1532.59protein FAM136A-like [Mizuhopecten yessoensis] >OW... [more]
XP_009537213.14.600e-1533.57hypothetical protein PHYSODRAFT_431768, partial [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000212NSK000212Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02480.1NO06G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597361gene_6566Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100145g7gene4262Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02480.1NO06G02480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02480 ID=NO06G02480|Name=NO06G02480|organism=Nannochloropsis oceanica|type=gene|length=638bp
AAGCACAGGCGACCTCCCGTCCTTAATTCCAGGCCAACCATCCACTGCTC
TAGCGCCACACAGTTTCGTAGACTATGAGCGACCCCCAAGCCCGTCTGCA
AGCAGCCGTAACGGCATCAATGGACAAGTTGGACCGGGCCTATATCCGGC
AGCTCAGCAAGAAGGCTTATTCATGCATGGCGACGTGCCACGACCAAAGT
AGTTACACCTCCCAAGACATCCAGCAATGCGTCGGGGCATGTTCTATGGG
CCTGCAAGAAGTCAATGCCCTGATCGGGAACGAGCTCCAATACTTCCAAA
ACCGGTTGCAGCGCTGCCAGCAATCTTGCGAAGACGAGGTGCGGGACGCT
CAGGCCAAGATGGGGGGAGGAAAACCCGACCCGTCACAACAAACAAAGCT
CCAAGGAGTCTACGACAAGTGCGTGGGCAAGTGTATTGACTCTCATTTAC
CCCTGATAAATGCCATGGAGAGCAAATTGGCAGGGGAGTGCAAAAGGCGG
CTATAAATTATGCGGAGATCAGAAAGATTTTGAGGACTTTGTCCGGTGAG
GGGGTAAATTGAAAATCTTCTTGATGCGTACCTGCTCGTAAAAGCTACTT
AATGGGAGCAAAAGCAAAACAACGTCTACTTTCAACCA
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protein sequence of NO06G02480.1

>NO06G02480.1-protein ID=NO06G02480.1-protein|Name=NO06G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQ
QCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGK
PDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKLAGECKRRL*
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Synonyms
Publications