NO06G02480.1, NO06G02480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02480.1
Unique NameNO06G02480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length638
Alignment locationchr6:700157..700794 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:700157..700794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02480.1 vs.
Match: XP_005855298.1 (hypothetical protein NGA_2102500, partial [Nannochloropsis gaditana CCMP526]; EKU21063.1 hypothetical protein NGA_2102500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 263.5 bits (672), Expect = 3.900e-67
Identity = 123/143 (86.01%), Postives = 133/143 (93.01%), Query Frame = 0
Query:    1 MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKLAGECKRRL 144
            M+DPQARLQAAVT  MDKLDRAYIR+LSK AYSCMA CHD SSYTSQD+QQCVGACS GLQE+NALI NELQYFQNRLQRCQQSCEDEVRD QAK GGGKPDPSQQ KLQG+YDKCVGKC+D+HLPL+NAME+KLAGECK+RL
Sbjct:   16 MTDPQARLQAAVTTCMDKLDRAYIRKLSKNAYSCMAACHDHSSYTSQDVQQCVGACSTGLQEINALISNELQYFQNRLQRCQQSCEDEVRDTQAKAGGGKPDPSQQAKLQGIYDKCVGKCVDTHLPLVNAMEAKLAGECKKRL 158          
The following BLAST results are available for this feature:
BLAST of NO06G02480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855298.13.900e-6786.01hypothetical protein NGA_2102500, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02480NO06G02480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02480.1NO06G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02480.1.cds1NO06G02480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02480.1 ID=NO06G02480.1|Name=NO06G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=638bp
AAGCACAGGCGACCTCCCGTCCTTAATTCCAGGCCAACCATCCACTGCTC
TAGCGCCACACAGTTTCGTAGACTATGAGCGACCCCCAAGCCCGTCTGCA
AGCAGCCGTAACGGCATCAATGGACAAGTTGGACCGGGCCTATATCCGGC
AGCTCAGCAAGAAGGCTTATTCATGCATGGCGACGTGCCACGACCAAAGT
AGTTACACCTCCCAAGACATCCAGCAATGCGTCGGGGCATGTTCTATGGG
CCTGCAAGAAGTCAATGCCCTGATCGGGAACGAGCTCCAATACTTCCAAA
ACCGGTTGCAGCGCTGCCAGCAATCTTGCGAAGACGAGGTGCGGGACGCT
CAGGCCAAGATGGGGGGAGGAAAACCCGACCCGTCACAACAAACAAAGCT
CCAAGGAGTCTACGACAAGTGCGTGGGCAAGTGTATTGACTCTCATTTAC
CCCTGATAAATGCCATGGAGAGCAAATTGGCAGGGGAGTGCAAAAGGCGG
CTATAAATTATGCGGAGATCAGAAAGATTTTGAGGACTTTGTCCGGTGAG
GGGGTAAATTGAAAATCTTCTTGATGCGTACCTGCTCGTAAAAGCTACTT
AATGGGAGCAAAAGCAAAACAACGTCTACTTTCAACCA
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protein sequence of NO06G02480.1

>NO06G02480.1-protein ID=NO06G02480.1-protein|Name=NO06G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQ
QCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGK
PDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKLAGECKRRL*
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mRNA from alignment at chr6:700157..700794+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02480.1 ID=NO06G02480.1|Name=NO06G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=638bp|location=Sequence derived from alignment at chr6:700157..700794+ (Nannochloropsis oceanica)
AAGCACAGGCGACCTCCCGTCCTTAATTCCAGGCCAACCATCCACTGCTC TAGCGCCACACAGTTTCGTAGACTATGAGCGACCCCCAAGCCCGTCTGCA AGCAGCCGTAACGGCATCAATGGACAAGTTGGACCGGGCCTATATCCGGC AGCTCAGCAAGAAGGCTTATTCATGCATGGCGACGTGCCACGACCAAAGT AGTTACACCTCCCAAGACATCCAGCAATGCGTCGGGGCATGTTCTATGGG CCTGCAAGAAGTCAATGCCCTGATCGGGAACGAGCTCCAATACTTCCAAA ACCGGTTGCAGCGCTGCCAGCAATCTTGCGAAGACGAGGTGCGGGACGCT CAGGCCAAGATGGGGGGAGGAAAACCCGACCCGTCACAACAAACAAAGCT CCAAGGAGTCTACGACAAGTGCGTGGGCAAGTGTATTGACTCTCATTTAC CCCTGATAAATGCCATGGAGAGCAAATTGGCAGGGGAGTGCAAAAGGCGG CTATAAATTATGCGGAGATCAGAAAGATTTTGAGGACTTTGTCCGGTGAG GGGGTAAATTGAAAATCTTCTTGATGCGTACCTGCTCGTAAAAGCTACTT AATGGGAGCAAAAGCAAAACAACGTCTACTTTCAACCA
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Coding sequence (CDS) from alignment at chr6:700157..700794+

>NO06G02480.1 ID=NO06G02480.1|Name=NO06G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at chr6:700157..700794+ (Nannochloropsis oceanica)
ATGAGCGACCCCCAAGCCCGTCTGCAAGCAGCCGTAACGGCATCAATGGA
CAAGTTGGACCGGGCCTATATCCGGCAGCTCAGCAAGAAGGCTTATTCAT
GCATGGCGACGTGCCACGACCAAAGTAGTTACACCTCCCAAGACATCCAG
CAATGCGTCGGGGCATGTTCTATGGGCCTGCAAGAAGTCAATGCCCTGAT
CGGGAACGAGCTCCAATACTTCCAAAACCGGTTGCAGCGCTGCCAGCAAT
CTTGCGAAGACGAGGTGCGGGACGCTCAGGCCAAGATGGGGGGAGGAAAA
CCCGACCCGTCACAACAAACAAAGCTCCAAGGAGTCTACGACAAGTGCGT
GGGCAAGTGTATTGACTCTCATTTACCCCTGATAAATGCCATGGAGAGCA
AATTGGCAGGGGAGTGCAAAAGGCGGCTATAA
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Synonyms
Publications