NO06G02460, NO06G02460 (gene) Nannochloropsis oceanica

Overview
NameNO06G02460
Unique NameNO06G02460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1087
Alignment locationchr6:696763..697849 +

Link to JBrowse

Properties
Property NameValue
DescriptionVesicle transport protein, Got1/SFT2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:696763..697849 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: INTERPRO
TermDefinition
IPR007305Vesicle_transpt_Got1/SFT2
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO06G02460 vs. NCBI_GenBank
Match: EWM26260.1 (Vesicle transport protein, Got1/SFT2 [Nannochloropsis gaditana])

HSP 1 Score: 229.9 bits (585), Expect = 1.100e-56
Identity = 160/240 (66.67%), Postives = 177/240 (73.75%), Query Frame = 0
Query:   50 TLLDSPRRSHLLSLLRYRSSVSLSRGLN-----CLLHLPRGGAFSYNNDQGYGRGGYPPY-DDDYGDDPYDTDAYYQPXXXXXXXXXXXXXXXAPGRASPXXXXXXXXXXXXXXFGSLINEPMPPSLKRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLLK 284
            T   +P  S L  L + RSS +  +  N       L   RGGA+   +DQGYGRGGYPPY                  XXXXXXXXXXXXXXX       XXXXXXXXX     F SL+NEP+PPSLKRLGFTLLGASLVLTAMG+SLFFERNLLRLGNLC+I+GLPLYFGPGR+MRLL A+EKLRAS+CFCLGV LVLRGNSF GMLLE+FGFFNLFANFFPVVLA+LR LP+VGDLLK
Sbjct:   66 TRRQTPSLSRLPRLFQARSSYTAFQHANHPQYLYTLRNVRGGAYPSRDDQGYGRGGYPPYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASASSFRSLVNEPVPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLK 305          
BLAST of NO06G02460 vs. NCBI_GenBank
Match: XP_002176159.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >XP_002185021.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC42866.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC43468.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 111.7 bits (278), Expect = 4.400e-21
Identity = 53/112 (47.32%), Postives = 79/112 (70.54%), Query Frame = 0
Query:  171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL 283
            +++G TLL + +++T +GISLFF + L+RLGNL  I G+P+  GP R M      +K RA++C  LG+ LV  G+  FGM+LE FG  NLF N FP+++AV++ +PIVG+L+
Sbjct:    1 RKVGLTLLASGIMVTMLGISLFFNKTLMRLGNLLFIAGVPVTLGPSRTMGYFLQPQKTRATVCLVLGILLVFFGHPVFGMVLEAFGLLNLFGNMFPLLMAVVKQMPIVGNLM 112          
BLAST of NO06G02460 vs. NCBI_GenBank
Match: GAX24953.1 (hypothetical protein FisN_2Lh229 [Fistulifera solaris])

HSP 1 Score: 109.8 bits (273), Expect = 1.700e-20
Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 0
Query:  171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL 283
            +R+GF LLG+  ++T +GISLFF + L+RLGNL  I G+P+  GP R +      EK RA+ C  LG+FLV  G   FG++LE FG  NLF N FP V AV +N+P +G LL
Sbjct:  123 RRIGFGLLGSGSIITMLGISLFFNKTLMRLGNLLFIAGVPMTLGPSRTLGYFVKPEKFRATGCLALGIFLVFIGMPVFGIILEAFGILNLFGNLFPFVWAVAKNMPGIGPLL 234          
BLAST of NO06G02460 vs. NCBI_GenBank
Match: GAX12398.1 (hypothetical protein FisN_2Hh229 [Fistulifera solaris])

HSP 1 Score: 109.4 bits (272), Expect = 2.200e-20
Identity = 65/153 (42.48%), Postives = 85/153 (55.56%), Query Frame = 0
Query:  171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL----KXXXXXXXXXXXXXXXXWGRGD--YYGGRESGPRSSR 318
            +R+GF LLG+  ++T +GISLFF + L+RLGNL  I G+P+  GP R +      EK RA+ C  LG+FLV  G   FG++LE FG  NLF N FP V AV +N+P +G LL                     +GR +  YYG R    R SR
Sbjct:  121 RRIGFGLLGSGSIITMLGISLFFNKTLMRLGNLLFIAGVPMTLGPSRTLGYFVKPEKFRATGCLALGIFLVFIGMPVFGIILEAFGILNLFGNLFPFVWAVAKNMPGIGPLLSGGNNRKRREPKRDEYSYEDDYGRDEDPYYGDRRPPSRDSR 273          
BLAST of NO06G02460 vs. NCBI_GenBank
Match: EJK77507.1 (hypothetical protein THAOC_00660 [Thalassiosira oceanica])

HSP 1 Score: 109.0 bits (271), Expect = 2.800e-20
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 0
Query:  169 SLKRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDL 282
            S K++G  LL A    TA+GI+LFF + L+RLGNL  + G+PL  GPGR M      +K RA+ C   G+ LVL G+   G+LLE+FG  NLF N FP+V+ + +NLP+VG L
Sbjct:  191 SNKKVGIILLSAGAAFTALGITLFFNKTLMRLGNLLFVAGVPLMIGPGRTMGYFLQPKKARATGCLACGILLVLVGHPVIGILLEVFGLLNLFGNMFPLVMMMAKNLPVVGSL 303          
BLAST of NO06G02460 vs. NCBI_GenBank
Match: OEU22775.1 (Got1-like protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 108.6 bits (270), Expect = 3.700e-20
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 0
Query:  171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL 283
            +++G  LLG    LT +G+SLFF + L+RLGNL  + G+P+  GPGR     F  +K RA+ C  LG+ LV  G    G+LLE+FGF NLF N FP+  A+++ +P +G LL
Sbjct:    1 RKIGLPLLGIGAALTLLGVSLFFNKMLMRLGNLFFVAGVPMTIGPGRTAGYFFQPKKARATACLSLGIILVFAGRPILGILLEVFGFINLFGNMFPLAFAIMKQMPFIGPLL 112          
BLAST of NO06G02460 vs. NCBI_GenBank
Match: XP_002291182.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED91289.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 105.9 bits (263), Expect = 2.400e-19
Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 0
Query:  169 SLKRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDL 282
            S ++LG   L +    TA+GI+LFF + L+RLGNL  + G+PL  GPGR +      +K RA+ C   G+FLVL G+   G+LLE+FG  NLF N FP+V+ + +NLP+VG L
Sbjct:    4 SNRKLGIIFLSSGAAFTALGITLFFNKTLMRLGNLLFVCGIPLMLGPGRTVGYFLQPKKARATGCLGCGIFLVLVGHPVIGILLEVFGLLNLFGNMFPLVMMMAKNLPVVGGL 116          
BLAST of NO06G02460 vs. NCBI_GenBank
Match: XP_009040386.1 (hypothetical protein AURANDRAFT_8288, partial [Aureococcus anophagefferens] >EGB04828.1 hypothetical protein AURANDRAFT_8288, partial [Aureococcus anophagefferens])

HSP 1 Score: 100.5 bits (249), Expect = 1.000e-17
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 0
Query:  171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIV 279
            ++ G  +  A    T +G+SLFFE+NL+RLGN+ ++ G P+  GP R  R +    KLR S+CF  G  L+L G+   G+++EIFGF NLF N FP+  A+ +NLP V
Sbjct:    1 RKTGLIMCAAGAASTMLGVSLFFEKNLIRLGNVLLVAGAPIVVGPQRASRYVLNPAKLRGSLCFACGFMLILSGHPLLGIVVEIFGFLNLFGNLFPLFTAMFKNLPFV 108          
BLAST of NO06G02460 vs. NCBI_GenBank
Match: XP_004351717.1 (golgi transport protein 1 [Cavenderia fasciculata] >EGG14997.1 golgi transport protein 1 [Cavenderia fasciculata])

HSP 1 Score: 100.5 bits (249), Expect = 1.000e-17
Identity = 46/112 (41.07%), Postives = 73/112 (65.18%), Query Frame = 0
Query:  171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL 283
            +++G  L G  L  T  G+ +FF+R LL +GNL  + G+ L  G  R     F  +K + ++CF  G+FLV+ G +F G+++E FGF NLF + FP+V+A+LR LP++G++L
Sbjct:    7 QKIGVMLSGMGLFFTFFGVMMFFDRGLLAIGNLLFLSGIALGLGLTRTFNFFFQMKKAKGTVCFFFGIFLVILGRTFIGLIIEAFGFINLFGDAFPIVIAILRKLPVIGNIL 118          
BLAST of NO06G02460 vs. NCBI_GenBank
Match: CBJ26149.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.1 bits (248), Expect = 1.300e-17
Identity = 47/112 (41.96%), Postives = 71/112 (63.39%), Query Frame = 0
Query:  171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL 283
            K+ G   L  S++LT MG+SL FE+NL+RLGNL  + G+ L+ GP  ++R      KLR S+ F +G F V  G+   G+ +E+FGF NLF N  P+V A+  N+P + +++
Sbjct:  219 KKYGIYALAGSVLLTMMGVSLMFEKNLIRLGNLGFVAGMSLFIGPSNVVRYFTQASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFIKEIM 330          
The following BLAST results are available for this feature:
BLAST of NO06G02460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26260.11.100e-5666.67Vesicle transport protein, Got1/SFT2 [Nannochlorop... [more]
XP_002176159.14.400e-2147.32predicted protein, partial [Phaeodactylum tricornu... [more]
GAX24953.11.700e-2050.00hypothetical protein FisN_2Lh229 [Fistulifera sola... [more]
GAX12398.12.200e-2042.48hypothetical protein FisN_2Hh229 [Fistulifera sola... [more]
EJK77507.12.800e-2048.67hypothetical protein THAOC_00660 [Thalassiosira oc... [more]
OEU22775.13.700e-2045.54Got1-like protein, partial [Fragilariopsis cylindr... [more]
XP_002291182.12.400e-1946.90predicted protein, partial [Thalassiosira pseudona... [more]
XP_009040386.11.000e-1744.44hypothetical protein AURANDRAFT_8288, partial [Aur... [more]
XP_004351717.11.000e-1741.07golgi transport protein 1 [Cavenderia fasciculata]... [more]
CBJ26149.11.300e-1741.96conserved unknown protein [Ectocarpus siliculosus][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000214NSK000214Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02460.1NO06G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640858gene_6564Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100145g4gene4264Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02460.1NO06G02460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02460 ID=NO06G02460|Name=NO06G02460|organism=Nannochloropsis oceanica|type=gene|length=1087bp
ATGAGGGCCATCGTCCCTTCACCGCTCCTCCTGGTCGTCCTCTTCTTTTC
CCTTACATTCCTCCTTGCTACCGGTGCCTCCCCATCGGCCTCCTCCGCCT
CCTCCTATGCCTCTTCCTCGCAGCCCGCGCATCAACGTCGTTATCAGACC
CTCCTCGACAGCCCCCGCCGCAGCCACCTCCTGTCCCTCCTCCGCTACCG
CTCCTCCGTTTCTCTTTCCCGCGGGCTCAATTGCCTTCTTCATCTCCCGC
GTGGCGGTGCCTTCTCATACAACAACGACCAAGGATACGGTCGAGGTGGC
TACCCACCCTACGACGACGACTACGGCGACGACCCCTACGACACCGACGC
GTACTACCAACCCCGACCTCCCCCTCCTTCCTCCACCTCCTCTCGTAGCC
GTGGTCGAGCCCCAGGACGTGCCTCACCGTCTGCACGAGGAGGGCCAACC
AGCGGCAATGGTCCTACTAGCTTTGGAAGTCTGATTAATGAGCCTATGCC
TCCATCACTTAAGCGGCTTGGCTTCACTTTACTAGGAGCGAGCTTGGTGT
TAACTGCTATGGGAATATCGCTTTTCTTTGAAAGGAATCTTTTAAGATTG
GGTAATTTGTGCATGATTCTGGGATTGCCTTTGTATTTTGGGCCTGGGCG
TATTATGCGTCTCCTGTTCGCAAAGGAGAAGTTGAGAGCATCCATTTGTT
TTTGTCTGGGGGTGTTTCTGGTGTTGAGAGGCAATTCGTTCTTCGGCATG
TTGTTGGAAATCTTTGGCTTCTTCAACTTGTTTGCAAACTTTTTCCCGGT
CGTGTTGGCGGTGTTGAGGAATCTGCCGATAGTAGGGGACTTGCTGAAGA
AGCCTGAGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGAAATGG
GGTAGGGGCGATTATTATGGAGGGAGGGAGAGTGGCCCGAGGAGCAGCAG
AGGACCTTATTCAAGTGATTATGATGATAGTTGGTGAGGGCAAGAAGAAA
GGTATAAGAAAAATTGCCGGGGGAAAAGTTTCAACACTCGACAAAAGCAC
ACGCACAGAAGAACGAAATCATTTGAGCAGATTTGGA
back to top

protein sequence of NO06G02460.1

>NO06G02460.1-protein ID=NO06G02460.1-protein|Name=NO06G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MRAIVPSPLLLVVLFFSLTFLLATGASPSASSASSYASSSQPAHQRRYQT
LLDSPRRSHLLSLLRYRSSVSLSRGLNCLLHLPRGGAFSYNNDQGYGRGG
YPPYDDDYGDDPYDTDAYYQPRPPPPSSTSSRSRGRAPGRASPSARGGPT
SGNGPTSFGSLINEPMPPSLKRLGFTLLGASLVLTAMGISLFFERNLLRL
GNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGM
LLEIFGFFNLFANFFPVVLAVLRNLPIVGDLLKKPEGGGGGGGGGGGGKW
GRGDYYGGRESGPRSSRGPYSSDYDDSW*
back to top
Synonyms
Publications