NO06G02460.1, NO06G02460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02460.1
Unique NameNO06G02460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1087
Alignment locationchr6:696763..697849 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:696763..697849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02460.1 vs.
Match: EWM26260.1 (Vesicle transport protein, Got1/SFT2 [Nannochloropsis gaditana])

HSP 1 Score: 320.9 bits (821), Expect = 4.800e-84
Identity = 194/305 (63.61%), Postives = 223/305 (73.11%), Query Frame = 0 
Query:   32 SASSYASSSQPAHQRRYQTLLDSPRRSHLLSLLRYRSSVSLSRGLNCLLHL-----PRGGAFSYNNDQGYGRGGYPPYDDDYGDDPYDTDAYYQPRPPPPSSTSSRSRGRAPGRASP---SARGGPTSGNGPTSFGSLINEPMPPSLKRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLLKKPEGGGGGGGGGGGGKWGRGDYYGGRESGPRSSRGPYSSDYDDSW 329
            SASS+ +S  P  ++       +P  S L  L + RSS +  +  N   +L      RGGA+   +DQGYGRGGYPPYDDDYGDD YDTD+YY P PPPPSS  SR+R RA GR S    S RG P S    +SF SL+NEP+PPSLKRLGFTLLGASLVLTAMG+SLFFERNLLRLGNLC+I+GLPLYFGPGR+MRLL A+EKLRAS+CFCLGV LVLRGNSF GMLLE+FGFFNLFANFFPVVLA+LR LP+VGDLLK+PE G G GGG G       +YYG  +SG  + R  Y  DY D W
Sbjct:   55 SASSHPTSLPPTRRQ-------TPSLSRLPRLFQARSSYTAFQHANHPQYLYTLRNVRGGAYPSRDDQGYGRGGYPPYDDDYGDDFYDTDSYYPPPPPPPSS--SRNRNRASGRPSSPPTSPRGRPGSSASASSFRSLVNEPVPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRG------KEYYG--QSGRGTYRDSYQGDYGDRW 342
The following BLAST results are available for this feature:
BLAST of NO06G02460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26260.14.800e-8463.61Vesicle transport protein, Got1/SFT2 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02460NO06G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02460.1NO06G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02460.1.cds1NO06G02460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02460.1 ID=NO06G02460.1|Name=NO06G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp
ATGAGGGCCATCGTCCCTTCACCGCTCCTCCTGGTCGTCCTCTTCTTTTC
CCTTACATTCCTCCTTGCTACCGGTGCCTCCCCATCGGCCTCCTCCGCCT
CCTCCTATGCCTCTTCCTCGCAGCCCGCGCATCAACGTCGTTATCAGACC
CTCCTCGACAGCCCCCGCCGCAGCCACCTCCTGTCCCTCCTCCGCTACCG
CTCCTCCGTTTCTCTTTCCCGCGGGCTCAATTGCCTTCTTCATCTCCCGC
GTGGCGGTGCCTTCTCATACAACAACGACCAAGGATACGGTCGAGGTGGC
TACCCACCCTACGACGACGACTACGGCGACGACCCCTACGACACCGACGC
GTACTACCAACCCCGACCTCCCCCTCCTTCCTCCACCTCCTCTCGTAGCC
GTGGTCGAGCCCCAGGACGTGCCTCACCGTCTGCACGAGGAGGGCCAACC
AGCGGCAATGGTCCTACTAGCTTTGGAAGTCTGATTAATGAGCCTATGCC
TCCATCACTTAAGCGGCTTGGCTTCACTTTACTAGGAGCGAGCTTGGTGT
TAACTGCTATGGGAATATCGCTTTTCTTTGAAAGGAATCTTTTAAGATTG
GGTAATTTGTGCATGATTCTGGGATTGCCTTTGTATTTTGGGCCTGGGCG
TATTATGCGTCTCCTGTTCGCAAAGGAGAAGTTGAGAGCATCCATTTGTT
TTTGTCTGGGGGTGTTTCTGGTGTTGAGAGGCAATTCGTTCTTCGGCATG
TTGTTGGAAATCTTTGGCTTCTTCAACTTGTTTGCAAACTTTTTCCCGGT
CGTGTTGGCGGTGTTGAGGAATCTGCCGATAGTAGGGGACTTGCTGAAGA
AGCCTGAGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGAAATGG
GGTAGGGGCGATTATTATGGAGGGAGGGAGAGTGGCCCGAGGAGCAGCAG
AGGACCTTATTCAAGTGATTATGATGATAGTTGGTGAGGGCAAGAAGAAA
GGTATAAGAAAAATTGCCGGGGGAAAAGTTTCAACACTCGACAAAAGCAC
ACGCACAGAAGAACGAAATCATTTGAGCAGATTTGGA
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protein sequence of NO06G02460.1

>NO06G02460.1-protein ID=NO06G02460.1-protein|Name=NO06G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MRAIVPSPLLLVVLFFSLTFLLATGASPSASSASSYASSSQPAHQRRYQT
LLDSPRRSHLLSLLRYRSSVSLSRGLNCLLHLPRGGAFSYNNDQGYGRGG
YPPYDDDYGDDPYDTDAYYQPRPPPPSSTSSRSRGRAPGRASPSARGGPT
SGNGPTSFGSLINEPMPPSLKRLGFTLLGASLVLTAMGISLFFERNLLRL
GNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGM
LLEIFGFFNLFANFFPVVLAVLRNLPIVGDLLKKPEGGGGGGGGGGGGKW
GRGDYYGGRESGPRSSRGPYSSDYDDSW*
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mRNA from alignment at chr6:696763..697849+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02460.1 ID=NO06G02460.1|Name=NO06G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp|location=Sequence derived from alignment at chr6:696763..697849+ (Nannochloropsis oceanica)
ATGAGGGCCATCGTCCCTTCACCGCTCCTCCTGGTCGTCCTCTTCTTTTC
CCTTACATTCCTCCTTGCTACCGGTGCCTCCCCATCGGCCTCCTCCGCCT
CCTCCTATGCCTCTTCCTCGCAGCCCGCGCATCAACGTCGTTATCAGACC
CTCCTCGACAGCCCCCGCCGCAGCCACCTCCTGTCCCTCCTCCGCTACCG
CTCCTCCGTTTCTCTTTCCCGCGGGCTCAATTGCCTTCTTCATCTCCCGC
GTGGCGGTGCCTTCTCATACAACAACGACCAAGGATACGGTCGAGGTGGC
TACCCACCCTACGACGACGACTACGGCGACGACCCCTACGACACCGACGC
GTACTACCAACCCCGACCTCCCCCTCCTTCCTCCACCTCCTCTCGTAGCC
GTGGTCGAGCCCCAGGACGTGCCTCACCGTCTGCACGAGGAGGGCCAACC
AGCGGCAATGGTCCTACTAGCTTTGGAAGTCTGATTAATGAGCCTATGCC
TCCATCACTTAAGCGGCTTGGCTTCACTTTACTAGGAGCGAGCTTGGTGT
TAACTGCTATGGGAATATCGCTTTTCTTTGAAAGGAATCTTTTAAGATTG
GGTAATTTGTGCATGATTCTGGGATTGCCTTTGTATTTTGGGCCTGGGCG
TATTATGCGTCTCCTGTTCGCAAAGGAGAAGTTGAGAGCATCCATTTGTT
TTTGTCTGGGGGTGTTTCTGGTGTTGAGAGGCAATTCGTTCTTCGGCATG
TTGTTGGAAATCTTTGGCTTCTTCAACTTGTTTGCAAACTTTTTCCCGGT
CGTGTTGGCGGTGTTGAGGAATCTGCCGATAGTAGGGGACTTGCTGAAGA
AGCCTGAGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGAAATGG
GGTAGGGGCGATTATTATGGAGGGAGGGAGAGTGGCCCGAGGAGCAGCAG
AGGACCTTATTCAAGTGATTATGATGATAGTTGGTGAGGGCAAGAAGAAA
GGTATAAGAAAAATTGCCGGGGGAAAAGTTTCAACACTCGACAAAAGCAC
ACGCACAGAAGAACGAAATCATTTGAGCAGATTTGGA
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Coding sequence (CDS) from alignment at chr6:696763..697849+

>NO06G02460.1 ID=NO06G02460.1|Name=NO06G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=987bp|location=Sequence derived from alignment at chr6:696763..697849+ (Nannochloropsis oceanica)
ATGAGGGCCATCGTCCCTTCACCGCTCCTCCTGGTCGTCCTCTTCTTTTC
CCTTACATTCCTCCTTGCTACCGGTGCCTCCCCATCGGCCTCCTCCGCCT
CCTCCTATGCCTCTTCCTCGCAGCCCGCGCATCAACGTCGTTATCAGACC
CTCCTCGACAGCCCCCGCCGCAGCCACCTCCTGTCCCTCCTCCGCTACCG
CTCCTCCGTTTCTCTTTCCCGCGGGCTCAATTGCCTTCTTCATCTCCCGC
GTGGCGGTGCCTTCTCATACAACAACGACCAAGGATACGGTCGAGGTGGC
TACCCACCCTACGACGACGACTACGGCGACGACCCCTACGACACCGACGC
GTACTACCAACCCCGACCTCCCCCTCCTTCCTCCACCTCCTCTCGTAGCC
GTGGTCGAGCCCCAGGACGTGCCTCACCGTCTGCACGAGGAGGGCCAACC
AGCGGCAATGGTCCTACTAGCTTTGGAAGTCTGATTAATGAGCCTATGCC
TCCATCACTTAAGCGGCTTGGCTTCACTTTACTAGGAGCGAGCTTGGTGT
TAACTGCTATGGGAATATCGCTTTTCTTTGAAAGGAATCTTTTAAGATTG
GGTAATTTGTGCATGATTCTGGGATTGCCTTTGTATTTTGGGCCTGGGCG
TATTATGCGTCTCCTGTTCGCAAAGGAGAAGTTGAGAGCATCCATTTGTT
TTTGTCTGGGGGTGTTTCTGGTGTTGAGAGGCAATTCGTTCTTCGGCATG
TTGTTGGAAATCTTTGGCTTCTTCAACTTGTTTGCAAACTTTTTCCCGGT
CGTGTTGGCGGTGTTGAGGAATCTGCCGATAGTAGGGGACTTGCTGAAGA
AGCCTGAGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGAAATGG
GGTAGGGGCGATTATTATGGAGGGAGGGAGAGTGGCCCGAGGAGCAGCAG
AGGACCTTATTCAAGTGATTATGATGATAGTTGGTGA
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Synonyms
Publications