NO06G02430, NO06G02430 (gene) Nannochloropsis oceanica

Overview
NameNO06G02430
Unique NameNO06G02430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1155
Alignment locationchr6:690146..691300 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna-directed rna polymerases i and iii subunit rpac2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:690146..691300 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR009025RBP11-like_dimer
Homology
BLAST of NO06G02430 vs. NCBI_GenBank
Match: EWM26262.1 (dna-directed rna polymerases i and iii subunit rpac2 [Nannochloropsis gaditana])

HSP 1 Score: 207.6 bits (527), Expect = 2.200e-50
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 0
Query:    1 MSVNEHRPPPADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREKDAGAE 118
            MSVNEHRP PA+KKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKET FCGYSVPHPSEPKMN+RLQTS +K A++VLKDGLHE+VEICDLFDFTLD AI+ YE ++ D+  E
Sbjct:   37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTDE 153          
BLAST of NO06G02430 vs. NCBI_GenBank
Match: CBJ49085.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.3 bits (329), Expect = 2.000e-27
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 0
Query:    1 MSVNEHRPPPADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEARE 112
            M+VNEHRP  AD KF+  E +   S TF+FGDEDHTLGN+LRHVLM  KE  FCGYSVPHPSEPKMN+RLQT T + A+E+LK+GL +L ++C++ +  ++  I   E  E
Sbjct:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQT-TGRPALELLKEGLRDLRDLCNILEERVEREIPDAEDEE 110          
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_024574539.1 (dna-directed rna polymerases i and iii subunit rpac2-like [Plasmopara halstedii] >CEG38170.1 dna-directed rna polymerases i and iii subunit rpac2-like [Plasmopara halstedii])

HSP 1 Score: 99.4 bits (246), Expect = 8.600e-18
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0
Query:   11 ADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEI 93
            A KK +    T E+S+T+VF DEDHTLGN+LR+VLM   +  FCGY++PHPSEPKM++RLQT     A EVL+ GL +L +I
Sbjct:    4 AAKKLDVFSTTSEYSKTYVFHDEDHTLGNALRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGAPADEVLRSGLTDLRKI 85          
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_009041822.1 (hypothetical protein AURANDRAFT_17769, partial [Aureococcus anophagefferens] >EGB03493.1 hypothetical protein AURANDRAFT_17769, partial [Aureococcus anophagefferens])

HSP 1 Score: 98.2 bits (243), Expect = 1.900e-17
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 0
Query:   27 TFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICD 95
            TFVF DEDHTLGN+LRHVLM +++T F GYSVPHPSEP MNVRLQT T + A+ V+ DGL +L  ICD
Sbjct:    1 TFVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQT-TGRPALAVMDDGLAQLSSICD 67          
BLAST of NO06G02430 vs. NCBI_GenBank
Match: EFJ08343.1 (hypothetical protein SELMODRAFT_49918, partial [Selaginella moellendorffii])

HSP 1 Score: 97.8 bits (242), Expect = 2.500e-17
Identity = 49/89 (55.06%), Postives = 60/89 (67.42%), Query Frame = 0
Query:   24 HSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113
            HS TF F  EDHTLGNSLR +L       FCGYSVPHPSE K+NVR+QT T   A EV KD L ++V IC+    T+DSA+  ++A E+
Sbjct:    2 HSSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQT-TGAPAKEVFKDALLDMVAICEHVSTTMDSAVERFKANEQ 89          
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_001008255.1 (DNA-directed RNA polymerase I and III 14 kDa protein [Tetrahymena thermophila SB210] >EAR88010.1 DNA-directed RNA polymerase I and III 14 kDa protein (macronuclear) [Tetrahymena thermophila SB210])

HSP 1 Score: 97.8 bits (242), Expect = 2.500e-17
Identity = 45/91 (49.45%), Postives = 65/91 (71.43%), Query Frame = 0
Query:   22 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113
            D    T+ F DEDHTLGN++R++L+ RK+  FCGY++PHPSE KMN+RLQT   K + EVLK+GL  L  +CD+ +   D+A+  +E ++K
Sbjct:   57 DRTCATYTFYDEDHTLGNTVRYMLVKRKDVEFCGYTIPHPSENKMNLRLQT-IKKNSNEVLKEGLDSLAGLCDVLNDKFDAAMKKFEKQQK 146          
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_002990466.2 (DNA-directed RNA polymerases I and III subunit RPAC2 isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 97.8 bits (242), Expect = 2.500e-17
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 0
Query:   22 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113
            + HS TF F  EDHTLGNSLR +L       FCGYSVPHPSE K+NVR+QT T   A EV KD L ++V IC+    T+DSA+  ++A E+
Sbjct:    7 ESHSSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQT-TGAPAKEVFKDALLDMVAICEHVSTTMDSAVERFKANEQ 96          
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_001456466.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK89069.1 unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 96.7 bits (239), Expect = 5.600e-17
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   11 ADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAI 105
            A K  E  E++D  + TFVF DEDHTLGNSLR++L  +    FCGYS+PHPSE KMN+RLQT  ++T  +++ DGL  L +ICD+ +     A+
Sbjct:   27 ATKGMEIQEHSDPFNGTFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQT-VNETKEKIMNDGLKCLSQICDIIEDKFKKAL 119          
BLAST of NO06G02430 vs. NCBI_GenBank
Match: EFJ15283.1 (hypothetical protein SELMODRAFT_49652, partial [Selaginella moellendorffii])

HSP 1 Score: 96.7 bits (239), Expect = 5.600e-17
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 0
Query:   24 HSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113
            HS TF F  EDHTLGNSLR +L       FCGYSVPHPSE K+NVR+QT T     EV KD L ++V IC+    T+DSA+  ++A E+
Sbjct:    2 HSSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQT-TGAPGKEVFKDALLDMVAICEHVSTTMDSAVGRFKANEQ 89          
BLAST of NO06G02430 vs. NCBI_GenBank
Match: CCI42655.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 96.7 bits (239), Expect = 5.600e-17
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = 0
Query:   11 ADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEI 93
            A KK +    T E S+T+VF DEDHTLGN+LR++LM   +  FCGY++PHPSEPKM++RLQT    ++ E+L++GL +L ++
Sbjct:    4 APKKLDVYSTTSEASKTYVFHDEDHTLGNALRYILMRNPQVEFCGYTIPHPSEPKMHLRLQTQKDVSSDEMLREGLQDLYKL 85          
The following BLAST results are available for this feature:
BLAST of NO06G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26262.12.200e-5082.91dna-directed rna polymerases i and iii subunit rpa... [more]
CBJ49085.12.000e-2757.66conserved unknown protein [Ectocarpus siliculosus][more]
XP_024574539.18.600e-1856.10dna-directed rna polymerases i and iii subunit rpa... [more]
XP_009041822.11.900e-1769.12hypothetical protein AURANDRAFT_17769, partial [Au... [more]
EFJ08343.12.500e-1755.06hypothetical protein SELMODRAFT_49918, partial [Se... [more]
XP_001008255.12.500e-1749.45DNA-directed RNA polymerase I and III 14 kDa prote... [more]
XP_002990466.22.500e-1753.85DNA-directed RNA polymerases I and III subunit RPA... [more]
XP_001456466.15.600e-1750.00hypothetical protein [Paramecium tetraurelia strai... [more]
EFJ15283.15.600e-1753.93hypothetical protein SELMODRAFT_49652, partial [Se... [more]
CCI42655.15.600e-1751.22unnamed protein product [Albugo candida][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000218NSK000218Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02430.1NO06G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100145g2gene4267Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02430.1NO06G02430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02430 ID=NO06G02430|Name=NO06G02430|organism=Nannochloropsis oceanica|type=gene|length=1155bp
TGGGCCCATATAATAAGACATGTTACCTTCATAAGCACATAAATAGGAAC
ATCTTATGCTACTCTGTTCCTTTATCTCCTCCACTCACACCTGTCGTTTG
CTCACCGACTTTGGTCCTTGTGCAATTGGCAGGAGATGAGGAGGCCATCC
TCATTACCCCCCCATCGCATCGTGCCCGAGTAGTAGGGGAACCCGCGCCC
CATCCGATGACATAGATAATGTGTTGGCGCATGGATCAATGCGGACGCAT
CATGAAACGCGGCCGAATCTAACTCACTCTCTTCCTTTCCTATCCTGCCA
ACTCACACAGGCGGGCGGCTGCACAAGGACGACGAACAAAGCAAGAGGGG
AAGTTAGCATACGAAGATATCTCGTCCATCAATCACAGCCGCCTCTGAAG
CATGTCTGTCAACGAGCATCGCCCACCACCCGCCGACAAGAAGTTCGAAT
CGgtgcgtattcgagaggctgtagctgtcttatttatattgtcgcacgga
aaaatctcgtgtaatgtttgaggcagcacctatagggcaagcgcgctcac
cctcatttttttttcctttcccgcaccatctacctttcaccaccgcagCT
CGAGTACACGGATGAGCACTCTCGGACCTTTGTTTTTGGTGATGAGGATC
ACACACTGGGCAATTCCTTACGGCATGTGCTGATGGGACGGAAGGAGACG
ACTTTTTGCGGCTACAGTGTGCCCCACCCCTCCGAGCCTAAAATGAACGT
TCGGCTTCAGACGTCCACGAGCAAAACCGCGGTGGAAGTGCTGAAAGACG
GGCTGCACGAATTGGTGGAGATTTGCGATTTGTTTGATTTCACATTGGAT
AGTGCCATTGCAGGGTACGAGGCACGCGAGAAGGATGCGGGGGCGGAGAG
TAAAGGACAGTCCAAATCGGTCTGAGCGACAGAAGAGAAGATAGAGGCAG
GAGGAAAGCCAGGGGAGATGTATAGTAGACCAAAAGAGAGATCTATTGAA
AGTATGAGTACAGGAAGAAAAGAGAGCAGTCAATTTAATTTGAGAGCGGT
CTATTTATAAGTGTTTCTTGCGTTTTGGGGATTTGATCACCTCACTACAC
TTAGGATTTCATTCTCCCTCTCACTATTTCCGATGTCAATCGAGCACGAG
TGAAC
back to top

protein sequence of NO06G02430.1

>NO06G02430.1-protein ID=NO06G02430.1-protein|Name=NO06G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MSVNEHRPPPADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKE
TTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTL
DSAIAGYEAREKDAGAESKGQSKSV*
back to top
Synonyms
Publications