NO06G02430.1, NO06G02430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02430.1
Unique NameNO06G02430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1009
Alignment locationchr6:690146..691300 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:690146..691300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02430.1 vs.
Match: EWM26262.1 (dna-directed rna polymerases i and iii subunit rpac2 [Nannochloropsis gaditana])

HSP 1 Score: 207.6 bits (527), Expect = 2.200e-50
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 0
Query:    1 MSVNEHRPPPADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREKDAGAE 118
            MSVNEHRP PA+KKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKET FCGYSVPHPSEPKMN+RLQTS +K A++VLKDGLHE+VEICDLFDFTLD AI+ YE ++ D+  E
Sbjct:   37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTDE 153          
The following BLAST results are available for this feature:
BLAST of NO06G02430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26262.12.200e-5082.91dna-directed rna polymerases i and iii subunit rpa... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02430NO06G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02430.1NO06G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02430.1.cds1NO06G02430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02430.1.cds2NO06G02430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02430.1 ID=NO06G02430.1|Name=NO06G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp
TGGGCCCATATAATAAGACATGTTACCTTCATAAGCACATAAATAGGAAC
ATCTTATGCTACTCTGTTCCTTTATCTCCTCCACTCACACCTGTCGTTTG
CTCACCGACTTTGGTCCTTGTGCAATTGGCAGGAGATGAGGAGGCCATCC
TCATTACCCCCCCATCGCATCGTGCCCGAGTAGTAGGGGAACCCGCGCCC
CATCCGATGACATAGATAATGTGTTGGCGCATGGATCAATGCGGACGCAT
CATGAAACGCGGCCGAATCTAACTCACTCTCTTCCTTTCCTATCCTGCCA
ACTCACACAGGCGGGCGGCTGCACAAGGACGACGAACAAAGCAAGAGGGG
AAGTTAGCATACGAAGATATCTCGTCCATCAATCACAGCCGCCTCTGAAG
CATGTCTGTCAACGAGCATCGCCCACCACCCGCCGACAAGAAGTTCGAAT
CGCTCGAGTACACGGATGAGCACTCTCGGACCTTTGTTTTTGGTGATGAG
GATCACACACTGGGCAATTCCTTACGGCATGTGCTGATGGGACGGAAGGA
GACGACTTTTTGCGGCTACAGTGTGCCCCACCCCTCCGAGCCTAAAATGA
ACGTTCGGCTTCAGACGTCCACGAGCAAAACCGCGGTGGAAGTGCTGAAA
GACGGGCTGCACGAATTGGTGGAGATTTGCGATTTGTTTGATTTCACATT
GGATAGTGCCATTGCAGGGTACGAGGCACGCGAGAAGGATGCGGGGGCGG
AGAGTAAAGGACAGTCCAAATCGGTCTGAGCGACAGAAGAGAAGATAGAG
GCAGGAGGAAAGCCAGGGGAGATGTATAGTAGACCAAAAGAGAGATCTAT
TGAAAGTATGAGTACAGGAAGAAAAGAGAGCAGTCAATTTAATTTGAGAG
CGGTCTATTTATAAGTGTTTCTTGCGTTTTGGGGATTTGATCACCTCACT
ACACTTAGGATTTCATTCTCCCTCTCACTATTTCCGATGTCAATCGAGCA
CGAGTGAAC
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protein sequence of NO06G02430.1

>NO06G02430.1-protein ID=NO06G02430.1-protein|Name=NO06G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MSVNEHRPPPADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKE
TTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTL
DSAIAGYEAREKDAGAESKGQSKSV*
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mRNA from alignment at chr6:690146..691300+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02430.1 ID=NO06G02430.1|Name=NO06G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp|location=Sequence derived from alignment at chr6:690146..691300+ (Nannochloropsis oceanica)
TGGGCCCATATAATAAGACATGTTACCTTCATAAGCACATAAATAGGAAC ATCTTATGCTACTCTGTTCCTTTATCTCCTCCACTCACACCTGTCGTTTG CTCACCGACTTTGGTCCTTGTGCAATTGGCAGGAGATGAGGAGGCCATCC TCATTACCCCCCCATCGCATCGTGCCCGAGTAGTAGGGGAACCCGCGCCC CATCCGATGACATAGATAATGTGTTGGCGCATGGATCAATGCGGACGCAT CATGAAACGCGGCCGAATCTAACTCACTCTCTTCCTTTCCTATCCTGCCA ACTCACACAGGCGGGCGGCTGCACAAGGACGACGAACAAAGCAAGAGGGG AAGTTAGCATACGAAGATATCTCGTCCATCAATCACAGCCGCCTCTGAAG CATGTCTGTCAACGAGCATCGCCCACCACCCGCCGACAAGAAGTTCGAAT CGGTGCGTATTCGAGAGGCTGTAGCTGTCTTATTTATATTGTCGCACGGA AAAATCTCGTGTAATGTTTGAGGCAGCACCTATAGGGCAAGCGCGCTCAC CCTCATTTTTTTTTCCTTTCCCGCACCATCTACCTTTCACCACCGCAGCT CGAGTACACGGATGAGCACTCTCGGACCTTTGTTTTTGGTGATGAGGATC ACACACTGGGCAATTCCTTACGGCATGTGCTGATGGGACGGAAGGAGACG ACTTTTTGCGGCTACAGTGTGCCCCACCCCTCCGAGCCTAAAATGAACGT TCGGCTTCAGACGTCCACGAGCAAAACCGCGGTGGAAGTGCTGAAAGACG GGCTGCACGAATTGGTGGAGATTTGCGATTTGTTTGATTTCACATTGGAT AGTGCCATTGCAGGGTACGAGGCACGCGAGAAGGATGCGGGGGCGGAGAG TAAAGGACAGTCCAAATCGGTCTGAGCGACAGAAGAGAAGATAGAGGCAG GAGGAAAGCCAGGGGAGATGTATAGTAGACCAAAAGAGAGATCTATTGAA AGTATGAGTACAGGAAGAAAAGAGAGCAGTCAATTTAATTTGAGAGCGGT CTATTTATAAGTGTTTCTTGCGTTTTGGGGATTTGATCACCTCACTACAC TTAGGATTTCATTCTCCCTCTCACTATTTCCGATGTCAATCGAGCACGAG TGAAC
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Coding sequence (CDS) from alignment at chr6:690146..691300+

>NO06G02430.1 ID=NO06G02430.1|Name=NO06G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at chr6:690146..691300+ (Nannochloropsis oceanica)
ATGTCTGTCAACGAGCATCGCCCACCACCCGCCGACAAGAAGTTCGAATC
GCTCGAGTACACGGATGAGCACTCTCGGACCTTTGTTTTTGGTGATGAGG
ATCACACACTGGGCAATTCCTTACGGCATGTGCTGATGGGACGGAAGGAG
ACGACTTTTTGCGGCTACAGTGTGCCCCACCCCTCCGAGCCTAAAATGAA
CGTTCGGCTTCAGACGTCCACGAGCAAAACCGCGGTGGAAGTGCTGAAAG
ACGGGCTGCACGAATTGGTGGAGATTTGCGATTTGTTTGATTTCACATTG
GATAGTGCCATTGCAGGGTACGAGGCACGCGAGAAGGATGCGGGGGCGGA
GAGTAAAGGACAGTCCAAATCGGTCTGA
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Synonyms
Publications