NO06G02400, NO06G02400 (gene) Nannochloropsis oceanica

Overview
NameNO06G02400
Unique NameNO06G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length793
Alignment locationchr6:685221..686013 -

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Properties
Property NameValue
DescriptionHolliday junction resolvase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:685221..686013 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
Homology
[Close]
BLAST of NO06G02400 vs. NCBI_GenBank
Match: EWM26249.1 (holliday junction resolvase [Nannochloropsis gaditana])

HSP 1 Score: 202.2 bits (513), Expect = 1.700e-48
Identity = 115/234 (49.15%), Postives = 141/234 (60.26%), Query Frame = 0 
Query:    3 LPHPSSAATRRLIKLLRPEALAKYLHHVRSSNPLPSPQLPHAVTGSNSTVCLLGLDVGGRKIGVSIADWTLSIARPLTRIDRP-----XXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLERHVRPSIA 232
            +P+ SS  + RL+K LRPEALA YL HVRS             T + ++  LLGLDVG  K+GVSIAD TL++A+PL RIDRP                      +FPA  G+ L+ LI+ H AAGLVVGYPLTLWEG+  +RC+EV+ FM  VY+ES +E+ VPF VWDERMTTQ+AREALRG                          +ED VAATI+LQ YLERH+RP IA
Sbjct:   19 MPYLSSPHSTRLVKFLRPEALAAYLRHVRS-------------TSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRG----EEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDIA 235
[Close]
BLAST of NO06G02400 vs. NCBI_GenBank
Match: WP_009828459.1 (Holliday junction resolvase RuvX [Rhodobacteraceae bacterium HTCC2083] >EDZ41591.1 conserved hypothetical protein TIGR00250 [Rhodobacteraceae bacterium HTCC2083])

HSP 1 Score: 71.2 bits (173), Expect = 4.600e-9
Identity = 56/180 (31.11%), Postives = 76/180 (42.22%), Query Frame = 0 
Query:   54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLER--HVRPSIA 232
            L+GLD+G + IGVS++D  LS+A PL  I R                           L ++IE     G+V+G P  + +G EG RCQ    F   + R+S     +P T WDER++T  A  AL                           EV D VAA  +LQ  L+R  H+R   A
Sbjct:   19 LVGLDLGTKTIGVSVSDGLLSVASPLETIKRTKYTAD------------------AARLEQIIEARYIGGIVLGLPFNM-DGSEGPRCQSTRAFARNLARQSE----LPITYWDERLSTVAAERAL----------------LAADASRRRRAEVIDNVAAAYILQGALDRLSHIRREAA 159
[Close]
BLAST of NO06G02400 vs. NCBI_GenBank
Match: CBN78349.1 (Holliday junction resolvase-like protein [Ectocarpus siliculosus])

HSP 1 Score: 70.9 bits (172), Expect = 6.000e-9
Identity = 68/234 (29.06%), Postives = 101/234 (43.16%), Query Frame = 0 
Query:    4 PHPSSAATRRLIKLLRPEALAK---YLHHVRSSNPLP-SPQLPHAVTGS----------NSTVCLLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLE 224
            PH  SAA  R +      A A    Y  H    NP+P    LP  +T +          N    L+GLDV     GV+++D T ++A PLTR+ R                    PA    +L +++E  +A GLVVG+PL+   GR   +C  V+ F+  ++     +V +P T++DERMT+  AR  L+                          E ED  AA ++LQ +L+
Sbjct:   36 PHRPSAAPARRLTTTGGAAGAPPRGYSRHRHPRNPVPGKDDLPTILTAAGMVKLCGLPGNRGSPLVGLDVAPSNFGVAVSDETKTLAFPLTRVPRRQSTKKLD------------PALVIGKLREIVEDCSACGLVVGWPLSK-SGRAEGQCLMVLQFLRQLHLRG--KVDIPVTLFDERMTSVEARGILK-----------------DDGLGRKIAEREDETAAMVILQGFLD 237
[Close]
BLAST of NO06G02400 vs. NCBI_GenBank
Match: OLC02289.1 (hypothetical protein AUH45_09215 [Gemmatimonadetes bacterium 13_1_40CM_69_22] >OLC75324.1 hypothetical protein AUH78_09265 [Gemmatimonadetes bacterium 13_1_40CM_4_69_8])

HSP 1 Score: 68.9 bits (167), Expect = 2.300e-8
Identity = 50/170 (29.41%), Postives = 79/170 (46.47%), Query Frame = 0 
Query:   54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLE 224
            LL +D G R+IG+S++D +  +A+PLT + R                   FP    ++L  L+E+H  AG++VG PL   +G EG   +      + + R++ +    P  +WDERMTT  A +A+R                             DA+AAT++LQ YL+
Sbjct:    7 LLAVDWGERRIGLSLSDESQRLAQPLTTLTR--------------RAGKRFPM---RQLRTLLEQHAVAGVIVGLPLD-EQGEEGAPARAARELAAAIGRQTGR----PVELWDERMTTARALQAVREMGGSARGRKGDV----------------DALAATLLLQHYLD 138
[Close]
BLAST of NO06G02400 vs. NCBI_GenBank
Match: WP_006562377.1 (Holliday junction resolvase RuvX [Oscillochloris trichoides] >EFO80357.1 Holliday junction resolvase YqgF [Oscillochloris trichoides DG-6])

HSP 1 Score: 68.6 bits (166), Expect = 3.000e-8
Identity = 54/174 (31.03%), Postives = 80/174 (45.98%), Query Frame = 0 
Query:   54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLERHVR 228
            LLGLDVG R+IGV+++D    +A PLT I+                            + +L+  H   G+VVG PLTL  G  G + ++  +F     +E  ++V +P  ++DER TT VA + LR                          +  D VAA+I+LQDYL+ H+R
Sbjct:    6 LLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITM------------------IARLVREHEVQGIVVGLPLTL-RGEIGPQAEQTRSFA----QELERQVGLPVMLFDERYTTTVAEQLLR----------------EMGVKPEKRKQQIDQVAASIILQDYLD-HIR 139
[Close]
BLAST of NO06G02400 vs. NCBI_GenBank
Match: WP_092059682.1 (Holliday junction resolvase RuvX [Poseidonocella pacifica] >SFA69930.1 putative holliday junction resolvase [Poseidonocella pacifica])

HSP 1 Score: 68.6 bits (166), Expect = 3.000e-8
Identity = 57/179 (31.84%), Postives = 78/179 (43.58%), Query Frame = 0 
Query:   54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIE---RHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLE--RHVR 228
            L GLD G + IGV+++D  LS+A PL  I R                       FG +  +L+E   + + AGLV+G P  + +G EG RCQ    F     R  S+   +P T WDER++T  A  AL                           EV D VAA+ +LQ  L+  RH+R
Sbjct:   19 LAGLDFGEKTIGVAVSDRLLSVATPLETIRRKK---------------------FGMDAQRLLELCAKRDIAGLVLGLPRNM-DGSEGARCQSTRAFA----RNLSRVTELPITFWDERLSTVAAERAL----------------LEADTSRKRRAEVIDHVAASYILQGALDRLRHLR 155
[Close]
BLAST of NO06G02400 vs. NCBI_GenBank
Match: PKQ04813.1 (Holliday junction resolvase RuvX [Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11])

HSP 1 Score: 68.2 bits (165), Expect = 3.900e-8
Identity = 44/126 (34.92%), Postives = 60/126 (47.62%), Query Frame = 0 
Query:   54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREAL 180
            L+G+D+G + IG++++D +LSIA PL  I R                     A     L  L   H+A GLVVG PL + +G EG RCQ    F+    R   +   +P   WDERM+TQ     L
Sbjct:   47 LIGVDLGSKTIGLALSDVSLSIASPLETIKRTKF------------------AADADRLLALAAEHDAGGLVVGLPLNM-DGTEGPRCQSTRAFI----RNLEKLTALPIAFWDERMSTQAVTRTL 149
[Close]
BLAST of NO06G02400 vs. NCBI_GenBank
Match: OUT74401.1 (Holliday junction resolvase RuvX [Rhizobiales bacterium TMED25])

HSP 1 Score: 67.8 bits (164), Expect = 5.100e-8
Identity = 49/171 (28.65%), Postives = 76/171 (44.44%), Query Frame = 0 
Query:   54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLER 225
            LLGLD+G + IG+S++D +  IA P   I+R                         +++ K+    N +GL++GYPL +    EG R Q  ++F     +E  ++ LVP  +WDER++T  A + L                           EV D +AAT +LQ  L+R
Sbjct:   18 LLGLDLGTKTIGISLSDSSRLIASPFDTINRKKTTLDI------------------EKITKICTEFNISGLILGYPLNM-NATEGPRAQSTISFA----QELEKKNLVPIILWDERLSTSAAEKIL----------------ITADLTRKKRKEVIDKMAATYILQGALDR 149
[Close]
BLAST of NO06G02400 vs. NCBI_GenBank
Match: WP_008474451.1 (Holliday junction resolvase RuvX [Nitrolancea hollandica] >CCF82333.1 putative Holliday junction resolvase [Nitrolancea hollandica Lb])

HSP 1 Score: 67.0 bits (162), Expect = 8.700e-8
Identity = 50/173 (28.90%), Postives = 73/173 (42.20%), Query Frame = 0 
Query:   55 LGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLERHVR 228
            +GLD+G R++GV+++D    IA P+  +D                            L   IERH+   ++VG P T   GREG + + V  F     ++  + V  P T WDER+TT +A +AL                           E  DAVAA ++LQ YL+   R
Sbjct:    1 MGLDIGERRVGVAVSDELHVIASPVESVDLKRGGV--------------------DALLAAIERHSPERIIVGLP-TSMSGREGPQAKAVREFA----KQLGEAVQTPITFWDERLTTSIAEQAL----------------ITSGRRRRERKERVDAVAAALILQSYLDSRRR 132
[Close]
BLAST of NO06G02400 vs. NCBI_GenBank
Match: PCJ42019.1 (Holliday junction resolvase RuvX [Alphaproteobacteria bacterium])

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-7
Identity = 41/126 (32.54%), Postives = 61/126 (48.41%), Query Frame = 0 
Query:   54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREAL 180
            LLGLD+G + IGV+++D   +IA P+  I R    X                      L  +IE  N  GL++G+PL + +G EG RCQ    F     R  S+++ +P  +WDER++T      L
Sbjct:   18 LLGLDLGSKTIGVALSDVMRNIATPMETIKRTKFTXD------------------AARLFTIIEEQNVGGLILGFPLNM-DGSEGPRCQSTRQFA----RNISEKIDLPIALWDERLSTVAVTRTL 120
The following BLAST results are available for this feature:
BLAST of NO06G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26249.11.700e-4849.15holliday junction resolvase [Nannochloropsis gadit... [more]
WP_009828459.14.600e-931.11Holliday junction resolvase RuvX [Rhodobacteraceae... [more]
CBN78349.16.000e-929.06Holliday junction resolvase-like protein [Ectocarp... [more]
OLC02289.12.300e-829.41hypothetical protein AUH45_09215 [Gemmatimonadetes... [more]
WP_006562377.13.000e-831.03Holliday junction resolvase RuvX [Oscillochloris t... [more]
WP_092059682.13.000e-831.84Holliday junction resolvase RuvX [Poseidonocella p... [more]
PKQ04813.13.900e-834.92Holliday junction resolvase RuvX [Alphaproteobacte... [more]
OUT74401.15.100e-828.65Holliday junction resolvase RuvX [Rhizobiales bact... [more]
WP_008474451.18.700e-828.90Holliday junction resolvase RuvX [Nitrolancea holl... [more]
PCJ42019.11.100e-732.54Holliday junction resolvase RuvX [Alphaproteobacte... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000221NSK000221Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02400.1NO06G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651512gene_6558Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g67gene4271Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02400.1NO06G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02400 ID=NO06G02400|Name=NO06G02400|organism=Nannochloropsis oceanica|type=gene|length=793bp
ATGGCCCTCCCTCACCCCTCCTCCGCCGCGACCCGGCGCCTCATCAAGCT
TCTTCGTCCCGAAGCACTAGCCAAGTACCTCCACCACGTCCGCTCGTCCA
ACCCTCTTCCTTCTCCTCAACTCCCTCATGCCGTGACCGGCTCTAACAGC
ACTGTCTGTCTTCTTGGACTCGATGTGGGGGGTCGGAAGATAGGTGTGTC
TATTGCAGACTGGACGTTAAGTATCGCAAGGCCCTTGACGAGGATCGATC
GCCCTCCCAGACGCCGACAGCAGCAGCAACATGCGCAGCAGCAACGAGAG
CAGGAGAGTTTCCCGGCCTTTTTCGGTAAGGAGTTGAACAAGTTAATAGA
GAGGCATAACGCGGCGGGGTTGGTAGTGGGATACCCCCTCACACTTTGGG
AGGGGAGGGAAGGAGTGAGGTGTCAAGAGGTGGTTAATTTTATGTCGTGC
GTTTATCGAGAATCATCGCAAGAGGTCCTCGTTCCCTTTACGGTATGGGA
TGAAAGGATGACGACGCAGGTGGCGAGGGAGGCATTGAGAGGGGAGGGGG
AGGGTTTAGGGGAAGGGGCGGGGGATGGAGTGGGAAAGAGGAGAAGGAAG
GGGGAGGGGAGACGGCAGGAAGTGGAAGATGCGGTGGCAGCGACGATTAT
GTTGCAGGATTATTTGGAAAGACACGTGCGCCCGAGCATTGCTTGAAAGG
AGGGAGGGAGGGAGGGGAGGGAAAAGGAAGGGGGGGAGAAGAATTGCGAA
GTACCGATACATGTTCCTACTTAAAGAAAGAAGCAACTGATGA
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protein sequence of NO06G02400.1

>NO06G02400.1-protein ID=NO06G02400.1-protein|Name=NO06G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MALPHPSSAATRRLIKLLRPEALAKYLHHVRSSNPLPSPQLPHAVTGSNS
TVCLLGLDVGGRKIGVSIADWTLSIARPLTRIDRPPRRRQQQQHAQQQRE
QESFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSC
VYRESSQEVLVPFTVWDERMTTQVAREALRGEGEGLGEGAGDGVGKRRRK
GEGRRQEVEDAVAATIMLQDYLERHVRPSIA*
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Synonyms
Publications