NO06G02400.1, NO06G02400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02400.1
Unique NameNO06G02400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length793
Alignment locationchr6:685221..686013 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:685221..686013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02400.1 vs.
Match: EWM26249.1 (holliday junction resolvase [Nannochloropsis gaditana])

HSP 1 Score: 228.0 bits (580), Expect = 3.000e-56
Identity = 133/236 (56.36%), Postives = 162/236 (68.64%), Query Frame = 0 
Query:    3 LPHPSSAATRRLIKLLRPEALAKYLHHVRSSNPLPSPQLPHAVTGSNSTVCLLGLDVGGRKIGVSIADWTLSIARPLTRIDRPPRRRQQQQHA-----QQQREQESFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGEGEGLGEGAGDGVGKRR--RKGEGRRQEVEDAVAATIMLQDYLERHVRPSIA 232
            +P+ SS  + RL+K LRPEALA YL HVRS             T + ++  LLGLDVG  K+GVSIAD TL++A+PL RIDRP RR      A     + +R+ E+FPA  G+ L+ LI+ H AAGLVVGYPLTLWEG+  +RC+EV+ FM  VY+ES +E+ VPF VWDERMTTQ+AREALR      GE   DG G RR  RKGE RRQ +ED VAATI+LQ YLERH+RP IA
Sbjct:   19 MPYLSSPHSTRLVKFLRPEALAAYLRHVRS-------------TSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALR------GEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDIA 235
The following BLAST results are available for this feature:
BLAST of NO06G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26249.13.000e-5656.36holliday junction resolvase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02400NO06G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02400.1NO06G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02400.1.cds1NO06G02400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02400.1 ID=NO06G02400.1|Name=NO06G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=793bp
ATGGCCCTCCCTCACCCCTCCTCCGCCGCGACCCGGCGCCTCATCAAGCT
TCTTCGTCCCGAAGCACTAGCCAAGTACCTCCACCACGTCCGCTCGTCCA
ACCCTCTTCCTTCTCCTCAACTCCCTCATGCCGTGACCGGCTCTAACAGC
ACTGTCTGTCTTCTTGGACTCGATGTGGGGGGTCGGAAGATAGGTGTGTC
TATTGCAGACTGGACGTTAAGTATCGCAAGGCCCTTGACGAGGATCGATC
GCCCTCCCAGACGCCGACAGCAGCAGCAACATGCGCAGCAGCAACGAGAG
CAGGAGAGTTTCCCGGCCTTTTTCGGTAAGGAGTTGAACAAGTTAATAGA
GAGGCATAACGCGGCGGGGTTGGTAGTGGGATACCCCCTCACACTTTGGG
AGGGGAGGGAAGGAGTGAGGTGTCAAGAGGTGGTTAATTTTATGTCGTGC
GTTTATCGAGAATCATCGCAAGAGGTCCTCGTTCCCTTTACGGTATGGGA
TGAAAGGATGACGACGCAGGTGGCGAGGGAGGCATTGAGAGGGGAGGGGG
AGGGTTTAGGGGAAGGGGCGGGGGATGGAGTGGGAAAGAGGAGAAGGAAG
GGGGAGGGGAGACGGCAGGAAGTGGAAGATGCGGTGGCAGCGACGATTAT
GTTGCAGGATTATTTGGAAAGACACGTGCGCCCGAGCATTGCTTGAAAGG
AGGGAGGGAGGGAGGGGAGGGAAAAGGAAGGGGGGGAGAAGAATTGCGAA
GTACCGATACATGTTCCTACTTAAAGAAAGAAGCAACTGATGA
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protein sequence of NO06G02400.1

>NO06G02400.1-protein ID=NO06G02400.1-protein|Name=NO06G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MALPHPSSAATRRLIKLLRPEALAKYLHHVRSSNPLPSPQLPHAVTGSNS
TVCLLGLDVGGRKIGVSIADWTLSIARPLTRIDRPPRRRQQQQHAQQQRE
QESFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSC
VYRESSQEVLVPFTVWDERMTTQVAREALRGEGEGLGEGAGDGVGKRRRK
GEGRRQEVEDAVAATIMLQDYLERHVRPSIA*
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mRNA from alignment at chr6:685221..686013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02400.1 ID=NO06G02400.1|Name=NO06G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=793bp|location=Sequence derived from alignment at chr6:685221..686013- (Nannochloropsis oceanica)
ATGGCCCTCCCTCACCCCTCCTCCGCCGCGACCCGGCGCCTCATCAAGCT
TCTTCGTCCCGAAGCACTAGCCAAGTACCTCCACCACGTCCGCTCGTCCA
ACCCTCTTCCTTCTCCTCAACTCCCTCATGCCGTGACCGGCTCTAACAGC
ACTGTCTGTCTTCTTGGACTCGATGTGGGGGGTCGGAAGATAGGTGTGTC
TATTGCAGACTGGACGTTAAGTATCGCAAGGCCCTTGACGAGGATCGATC
GCCCTCCCAGACGCCGACAGCAGCAGCAACATGCGCAGCAGCAACGAGAG
CAGGAGAGTTTCCCGGCCTTTTTCGGTAAGGAGTTGAACAAGTTAATAGA
GAGGCATAACGCGGCGGGGTTGGTAGTGGGATACCCCCTCACACTTTGGG
AGGGGAGGGAAGGAGTGAGGTGTCAAGAGGTGGTTAATTTTATGTCGTGC
GTTTATCGAGAATCATCGCAAGAGGTCCTCGTTCCCTTTACGGTATGGGA
TGAAAGGATGACGACGCAGGTGGCGAGGGAGGCATTGAGAGGGGAGGGGG
AGGGTTTAGGGGAAGGGGCGGGGGATGGAGTGGGAAAGAGGAGAAGGAAG
GGGGAGGGGAGACGGCAGGAAGTGGAAGATGCGGTGGCAGCGACGATTAT
GTTGCAGGATTATTTGGAAAGACACGTGCGCCCGAGCATTGCTTGAAAGG
AGGGAGGGAGGGAGGGGAGGGAAAAGGAAGGGGGGGAGAAGAATTGCGAA
GTACCGATACATGTTCCTACTTAAAGAAAGAAGCAACTGATGA
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Coding sequence (CDS) from alignment at chr6:685221..686013-

>NO06G02400.1 ID=NO06G02400.1|Name=NO06G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr6:685221..686013- (Nannochloropsis oceanica)
ATGGCCCTCCCTCACCCCTCCTCCGCCGCGACCCGGCGCCTCATCAAGCT
TCTTCGTCCCGAAGCACTAGCCAAGTACCTCCACCACGTCCGCTCGTCCA
ACCCTCTTCCTTCTCCTCAACTCCCTCATGCCGTGACCGGCTCTAACAGC
ACTGTCTGTCTTCTTGGACTCGATGTGGGGGGTCGGAAGATAGGTGTGTC
TATTGCAGACTGGACGTTAAGTATCGCAAGGCCCTTGACGAGGATCGATC
GCCCTCCCAGACGCCGACAGCAGCAGCAACATGCGCAGCAGCAACGAGAG
CAGGAGAGTTTCCCGGCCTTTTTCGGTAAGGAGTTGAACAAGTTAATAGA
GAGGCATAACGCGGCGGGGTTGGTAGTGGGATACCCCCTCACACTTTGGG
AGGGGAGGGAAGGAGTGAGGTGTCAAGAGGTGGTTAATTTTATGTCGTGC
GTTTATCGAGAATCATCGCAAGAGGTCCTCGTTCCCTTTACGGTATGGGA
TGAAAGGATGACGACGCAGGTGGCGAGGGAGGCATTGAGAGGGGAGGGGG
AGGGTTTAGGGGAAGGGGCGGGGGATGGAGTGGGAAAGAGGAGAAGGAAG
GGGGAGGGGAGACGGCAGGAAGTGGAAGATGCGGTGGCAGCGACGATTAT
GTTGCAGGATTATTTGGAAAGACACGTGCGCCCGAGCATTGCTTGA
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Synonyms
Publications