NO06G02200, NO06G02200 (gene) Nannochloropsis oceanica

Overview
NameNO06G02200
Unique NameNO06G02200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1391
Alignment locationchr6:640472..641862 +

Link to JBrowse

Properties
Property NameValue
DescriptionMolecular chaperone
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:640472..641862 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR001623DnaJ_domain
Homology
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BLAST of NO06G02200 vs. NCBI_GenBank
Match: EWM26211.1 (molecular chaperone [Nannochloropsis gaditana])

HSP 1 Score: 114.0 bits (284), Expect = 8.600e-22
Identity = 96/283 (33.92%), Postives = 121/283 (42.76%), Query Frame = 0 
Query:   23 RAPSDSTSSH----HDPHHHQRAHIRRVLQARHAFEVLELPLQTTSPVTVRRAFRKFALQLHPDKNAAPDAQKAFIRLSEAHEVLRDVEEQKHLLGKLRPPKREGFEGSKEDALNDSTTSWKSFSFVRPTCTSTSGSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDVEECQAAERRILLAHLMESVRDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKENSWQAFLNGKKRTRTGNGVKQGGGQK 302
            R+P   T S     H     QR H+RRVLQA++AFEVL+LP+  +S  TVR A+RKFAL LHPDKNAA +AQKAFIRLSEA+E LRD + Q++++ KL   +    EG        S TS         T  ST G +                                                               DVEE QAAERR LLAHL+ +V+DD                                N+WQ FL G+KR R    V++ G +K
Sbjct:   17 RSPPSKTCSQNPELHPSDQQQRMHVRRVLQAQNAFEVLQLPVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRDTKSQQNIIYKLNSDRERQCEGLH----GRSDTSPSRKRKYGSTAASTPGKS-------ASPKSSTTSVRKSSKSFAEVLREWENFEKQYVEELRNKQMSVEAQARKELRRSRREDVEEQQAAERRTLLAHLLANVQDD---SEDDVPTALHTREGQEREIEEGLRTPRPRNTWQTFLRGRKRGRRQERVEENGARK 285
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BLAST of NO06G02200 vs. NCBI_GenBank
Match: XP_009034573.1 (hypothetical protein AURANDRAFT_62223 [Aureococcus anophagefferens] >EGB11013.1 hypothetical protein AURANDRAFT_62223 [Aureococcus anophagefferens])

HSP 1 Score: 69.7 bits (169), Expect = 1.800e-8
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 0 
Query:   43 IRRVLQARHAFEVLELPLQTTSPVTVRRAFRKFALQLHPDKNAAPDAQKAFIRLSEAHEVLRDVEEQK 111
            I R+L+AR+ FEV+++P+   +P  V++ +RK AL++HPDK +  D ++AF RLSEAHE L D   Q+
Sbjct:  864 IERILKARNHFEVMDIPVCPCAPAIVKKLYRKLALKVHPDKCSHADGERAFKRLSEAHEALSDERAQR 931
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BLAST of NO06G02200 vs. NCBI_GenBank
Match: OLP95565.1 (Chaperone protein dnaJ 49 [Symbiodinium microadriaticum])

HSP 1 Score: 65.5 bits (158), Expect = 3.500e-7
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 0 
Query:   34 DPHHHQRAHIRRVLQARHAFEVLELPLQTTSPVTV-RRAFRKFALQLHPDKNAAPDAQKAFIRLSEAHEVLRDVEEQKHL---LGKLRPPKRE 123
            DP +     I RVL++R+ FEVL+LP Q  + +++ ++A+RK +L +HPDKN  P +  AF ++  A E L D  +Q+ L   LGKL P   E
Sbjct:  207 DPQYWYDKAIERVLESRNDFEVLDLPPQLITDLSILKKAYRKISLSVHPDKNKHPQSADAFRKVYGAFETLMDTRQQRRLLWILGKLTPDMEE 299
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BLAST of NO06G02200 vs. NCBI_GenBank
Match: XP_001748552.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ86716.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 64.7 bits (156), Expect = 6.000e-7
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 0 
Query:   39 QRAHIRRVLQARHAFEVLELPLQTTSPVTVRRAFRKFALQLHPDKNAAPDAQKAFIRLSEAHEVLRDVEEQKH--LLGKLRP---PKREG 124
            QR    ++L+A+  +EVL +  +T     ++RA+RK ALQLHPDKN AP A +AF  +S+A++VL D ++++H  L G+  P   P R G
Sbjct:  106 QRDAAAKILRAKTHYEVLSVQ-RTAEATVIKRAYRKLALQLHPDKNQAPGADEAFKAVSKAYDVLSDPQKRRHYELTGEDAPAASPSRPG 194
The following BLAST results are available for this feature:
BLAST of NO06G02200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM26211.18.600e-2233.92molecular chaperone [Nannochloropsis gaditana][more]
XP_009034573.11.800e-847.06hypothetical protein AURANDRAFT_62223 [Aureococcus... [more]
OLP95565.13.500e-740.86Chaperone protein dnaJ 49 [Symbiodinium microadria... [more]
XP_001748552.16.000e-742.22hypothetical protein [Monosiga brevicollis MX1] >E... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL090nonsL090Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR146ngnoR146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000246NSK000246Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02200.1NO06G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530970gene_6534Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g39gene4294Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02200.1NO06G02200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02200 ID=NO06G02200|Name=NO06G02200|organism=Nannochloropsis oceanica|type=gene|length=1391bp
GAAAAGTCAACGGCTCTGCCGAATGACGAACATCAGCAACGGCGGCAGCG
AACAACCGCTCGTCAAAATACATGCCGGTCGCACTACAAACTTTGTGAGA
CGCCCCCGTTATTTTGTCTAACCGTCCCTTGTACAAGACCTTATCACACA
GGGCTGTCGGTATGCACCGGGCCAGTAGCACCGATGCCTCTCCCTCCCTT
GAGGCACTGTCTTGCCTACAACGACCTCGGGCCCCATCTGACTCCACCTC
CTCCCACCACGACCCGCACCATCACCAACGTGCGCATATCCGTCGGGTCC
TCCAAGCGCGACATGCCTTTGAGGTGCTTGAGCTGCCACTGCAGACCACG
AGTCCTGTGACAGTGCGCCGGGCGTTCCGAAAGTTTGCTCTCCAGCTGCA
CCCAGATAAGAACGCCGCGCCAGACGCCCAAAAGGCATTCATTCGACTAT
CGGAAGCCCACGAGGTACTGCGAGACGTTGAGGAGCAGAAACATCTTTTG
GGAAAGCTTCGGCCACCGAAAAGAGAAGGATTCGAAGGAAGCAAGGAAGA
CGCATTGAATGATTCGACAACATCGTGGAAGTCTTTTTCCTTCGTCCGAC
CGACATGTACCAGTACAAGCGGCAGCAACAACAGCAGCACCGACAGCAGC
AGCACCGCGCCTCAATCAAAAGGAACGTCTTTTTCATCGTCCCGAAGCTT
CATAGACTTTCTACGGGAGTGGGAAGACTTTGAAAGAGAGTACATGGACG
AGTTGCGGGGTAAACAAACTTCGCTGGAGGCGCAGGCGCGTAAGGAGAAG
CGTCAGAGCCGTCGGAGGGATGTGGAAGAATGTCAGGCGGCGGAGCGACG
TATTTTACTCGCGCACTTGATGGAAAGCGTGCGGGATGACGAGGATGAGG
AAGAAGGGGAGGATAAAAAGATAGGGAAAGGTGGGGTGAAGGAGGAGGGT
GGGGTGGAGGAGGAGCAGACTCAAAAACGGAAAGAGAACTCTTGGCAGGC
TTTTTTGAATGGGAAGAAACGTACGCGGACAGGTAATGGGGTAAAGCAGG
GAGGTGGTCAGAAGTGCAAGCGAGGAGGTGGAGAGGGTGGGGCGAAGGAA
GGAAAGAGATCTGTGTAGAACACGGTTATGGTAAAAATTGGATTTAGGAT
GGCGTTGCGATGAAGACGAGGAATGGTTTGTCGAGGTGAAAATGGACATC
ATGAACCACACAAAGAAAGGTTGGGGGGTTGGCCCGCCCGCACTTCAACC
TTTCTAGTTCGACCAATGCGTACCAGCTTTTGGACAAACAAGATGTCCCT
GAGTTTCATTCAGGGTTGTGTTTTCCATCGCCAGGAACAATTGCTTATAG
AAAATGAGGGTATGAAATCTTAACGAGGAAGCACCCTTGTG
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protein sequence of NO06G02200.1

>NO06G02200.1-protein ID=NO06G02200.1-protein|Name=NO06G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MHRASSTDASPSLEALSCLQRPRAPSDSTSSHHDPHHHQRAHIRRVLQAR
HAFEVLELPLQTTSPVTVRRAFRKFALQLHPDKNAAPDAQKAFIRLSEAH
EVLRDVEEQKHLLGKLRPPKREGFEGSKEDALNDSTTSWKSFSFVRPTCT
STSGSNNSSTDSSSTAPQSKGTSFSSSRSFIDFLREWEDFEREYMDELRG
KQTSLEAQARKEKRQSRRRDVEECQAAERRILLAHLMESVRDDEDEEEGE
DKKIGKGGVKEEGGVEEEQTQKRKENSWQAFLNGKKRTRTGNGVKQGGGQ
KCKRGGGEGGAKEGKRSV*
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Synonyms
Publications