NO06G02200.1, NO06G02200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02200.1
Unique NameNO06G02200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1391
Alignment locationchr6:640472..641862 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:640472..641862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02200.1 vs.
Match: EWM26211.1 (molecular chaperone [Nannochloropsis gaditana])

HSP 1 Score: 193.4 bits (490), Expect = 1.100e-45
Identity = 136/284 (47.89%), Postives = 179/284 (63.03%), Query Frame = 0 
Query:   23 RAPSDSTSSH----HDPHHHQRAHIRRVLQARHAFEVLELPLQTTSPVTVRRAFRKFALQLHPDKNAAPDAQKAFIRLSEAHEVLRDVEEQKHLLGKLRPPKREGFEGSKEDALNDSTTSWKSFSFVRPTCTSTSGSNNSSTDSSSTAPQSKGTSF-SSSRSFIDFLREWEDFEREYMDELRGKQTSLEAQARKEKRQSRRRDVEECQAAERRILLAHLMESVRDDEDEEEGEDKKIGKGGVKEEGGVEEEQTQKRKENSWQAFLNGKKRTRTGNGVKQGGGQK 302
            R+P   T S     H     QR H+RRVLQA++AFEVL+LP+  +S  TVR A+RKFAL LHPDKNAA +AQKAFIRLSEA+E LRD + Q++++ KL   +    EG        S TS        P+     GS  +ST   S +P+S  TS   SS+SF + LREWE+FE++Y++ELR KQ S+EAQARKE R+SRR DVEE QAAERR LLAHL+ +V+DD +++        +G  +E   +EE     R  N+WQ FL G+KR R    V++ G +K
Sbjct:   17 RSPPSKTCSQNPELHPSDQQQRMHVRRVLQAQNAFEVLQLPVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRDTKSQQNIIYKLNSDRERQCEGLH----GRSDTS--------PSRKRKYGSTAASTPGKSASPKSSTTSVRKSSKSFAEVLREWENFEKQYVEELRNKQMSVEAQARKELRRSRREDVEEQQAAERRTLLAHLLANVQDDSEDDVPTALHTREGQERE---IEEGLRTPRPRNTWQTFLRGRKRGRRQERVEENGARK 285
The following BLAST results are available for this feature:
BLAST of NO06G02200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26211.11.100e-4547.89molecular chaperone [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02200NO06G02200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02200.1NO06G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02200.1.cds1NO06G02200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02200.1 ID=NO06G02200.1|Name=NO06G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp
GAAAAGTCAACGGCTCTGCCGAATGACGAACATCAGCAACGGCGGCAGCG
AACAACCGCTCGTCAAAATACATGCCGGTCGCACTACAAACTTTGTGAGA
CGCCCCCGTTATTTTGTCTAACCGTCCCTTGTACAAGACCTTATCACACA
GGGCTGTCGGTATGCACCGGGCCAGTAGCACCGATGCCTCTCCCTCCCTT
GAGGCACTGTCTTGCCTACAACGACCTCGGGCCCCATCTGACTCCACCTC
CTCCCACCACGACCCGCACCATCACCAACGTGCGCATATCCGTCGGGTCC
TCCAAGCGCGACATGCCTTTGAGGTGCTTGAGCTGCCACTGCAGACCACG
AGTCCTGTGACAGTGCGCCGGGCGTTCCGAAAGTTTGCTCTCCAGCTGCA
CCCAGATAAGAACGCCGCGCCAGACGCCCAAAAGGCATTCATTCGACTAT
CGGAAGCCCACGAGGTACTGCGAGACGTTGAGGAGCAGAAACATCTTTTG
GGAAAGCTTCGGCCACCGAAAAGAGAAGGATTCGAAGGAAGCAAGGAAGA
CGCATTGAATGATTCGACAACATCGTGGAAGTCTTTTTCCTTCGTCCGAC
CGACATGTACCAGTACAAGCGGCAGCAACAACAGCAGCACCGACAGCAGC
AGCACCGCGCCTCAATCAAAAGGAACGTCTTTTTCATCGTCCCGAAGCTT
CATAGACTTTCTACGGGAGTGGGAAGACTTTGAAAGAGAGTACATGGACG
AGTTGCGGGGTAAACAAACTTCGCTGGAGGCGCAGGCGCGTAAGGAGAAG
CGTCAGAGCCGTCGGAGGGATGTGGAAGAATGTCAGGCGGCGGAGCGACG
TATTTTACTCGCGCACTTGATGGAAAGCGTGCGGGATGACGAGGATGAGG
AAGAAGGGGAGGATAAAAAGATAGGGAAAGGTGGGGTGAAGGAGGAGGGT
GGGGTGGAGGAGGAGCAGACTCAAAAACGGAAAGAGAACTCTTGGCAGGC
TTTTTTGAATGGGAAGAAACGTACGCGGACAGGTAATGGGGTAAAGCAGG
GAGGTGGTCAGAAGTGCAAGCGAGGAGGTGGAGAGGGTGGGGCGAAGGAA
GGAAAGAGATCTGTGTAGAACACGGTTATGGTAAAAATTGGATTTAGGAT
GGCGTTGCGATGAAGACGAGGAATGGTTTGTCGAGGTGAAAATGGACATC
ATGAACCACACAAAGAAAGGTTGGGGGGTTGGCCCGCCCGCACTTCAACC
TTTCTAGTTCGACCAATGCGTACCAGCTTTTGGACAAACAAGATGTCCCT
GAGTTTCATTCAGGGTTGTGTTTTCCATCGCCAGGAACAATTGCTTATAG
AAAATGAGGGTATGAAATCTTAACGAGGAAGCACCCTTGTG
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protein sequence of NO06G02200.1

>NO06G02200.1-protein ID=NO06G02200.1-protein|Name=NO06G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MHRASSTDASPSLEALSCLQRPRAPSDSTSSHHDPHHHQRAHIRRVLQAR
HAFEVLELPLQTTSPVTVRRAFRKFALQLHPDKNAAPDAQKAFIRLSEAH
EVLRDVEEQKHLLGKLRPPKREGFEGSKEDALNDSTTSWKSFSFVRPTCT
STSGSNNSSTDSSSTAPQSKGTSFSSSRSFIDFLREWEDFEREYMDELRG
KQTSLEAQARKEKRQSRRRDVEECQAAERRILLAHLMESVRDDEDEEEGE
DKKIGKGGVKEEGGVEEEQTQKRKENSWQAFLNGKKRTRTGNGVKQGGGQ
KCKRGGGEGGAKEGKRSV*
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mRNA from alignment at chr6:640472..641862+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02200.1 ID=NO06G02200.1|Name=NO06G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp|location=Sequence derived from alignment at chr6:640472..641862+ (Nannochloropsis oceanica)
GAAAAGTCAACGGCTCTGCCGAATGACGAACATCAGCAACGGCGGCAGCG
AACAACCGCTCGTCAAAATACATGCCGGTCGCACTACAAACTTTGTGAGA
CGCCCCCGTTATTTTGTCTAACCGTCCCTTGTACAAGACCTTATCACACA
GGGCTGTCGGTATGCACCGGGCCAGTAGCACCGATGCCTCTCCCTCCCTT
GAGGCACTGTCTTGCCTACAACGACCTCGGGCCCCATCTGACTCCACCTC
CTCCCACCACGACCCGCACCATCACCAACGTGCGCATATCCGTCGGGTCC
TCCAAGCGCGACATGCCTTTGAGGTGCTTGAGCTGCCACTGCAGACCACG
AGTCCTGTGACAGTGCGCCGGGCGTTCCGAAAGTTTGCTCTCCAGCTGCA
CCCAGATAAGAACGCCGCGCCAGACGCCCAAAAGGCATTCATTCGACTAT
CGGAAGCCCACGAGGTACTGCGAGACGTTGAGGAGCAGAAACATCTTTTG
GGAAAGCTTCGGCCACCGAAAAGAGAAGGATTCGAAGGAAGCAAGGAAGA
CGCATTGAATGATTCGACAACATCGTGGAAGTCTTTTTCCTTCGTCCGAC
CGACATGTACCAGTACAAGCGGCAGCAACAACAGCAGCACCGACAGCAGC
AGCACCGCGCCTCAATCAAAAGGAACGTCTTTTTCATCGTCCCGAAGCTT
CATAGACTTTCTACGGGAGTGGGAAGACTTTGAAAGAGAGTACATGGACG
AGTTGCGGGGTAAACAAACTTCGCTGGAGGCGCAGGCGCGTAAGGAGAAG
CGTCAGAGCCGTCGGAGGGATGTGGAAGAATGTCAGGCGGCGGAGCGACG
TATTTTACTCGCGCACTTGATGGAAAGCGTGCGGGATGACGAGGATGAGG
AAGAAGGGGAGGATAAAAAGATAGGGAAAGGTGGGGTGAAGGAGGAGGGT
GGGGTGGAGGAGGAGCAGACTCAAAAACGGAAAGAGAACTCTTGGCAGGC
TTTTTTGAATGGGAAGAAACGTACGCGGACAGGTAATGGGGTAAAGCAGG
GAGGTGGTCAGAAGTGCAAGCGAGGAGGTGGAGAGGGTGGGGCGAAGGAA
GGAAAGAGATCTGTGTAGAACACGGTTATGGTAAAAATTGGATTTAGGAT
GGCGTTGCGATGAAGACGAGGAATGGTTTGTCGAGGTGAAAATGGACATC
ATGAACCACACAAAGAAAGGTTGGGGGGTTGGCCCGCCCGCACTTCAACC
TTTCTAGTTCGACCAATGCGTACCAGCTTTTGGACAAACAAGATGTCCCT
GAGTTTCATTCAGGGTTGTGTTTTCCATCGCCAGGAACAATTGCTTATAG
AAAATGAGGGTATGAAATCTTAACGAGGAAGCACCCTTGTG
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Coding sequence (CDS) from alignment at chr6:640472..641862+

>NO06G02200.1 ID=NO06G02200.1|Name=NO06G02200.1|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr6:640472..641862+ (Nannochloropsis oceanica)
ATGCACCGGGCCAGTAGCACCGATGCCTCTCCCTCCCTTGAGGCACTGTC
TTGCCTACAACGACCTCGGGCCCCATCTGACTCCACCTCCTCCCACCACG
ACCCGCACCATCACCAACGTGCGCATATCCGTCGGGTCCTCCAAGCGCGA
CATGCCTTTGAGGTGCTTGAGCTGCCACTGCAGACCACGAGTCCTGTGAC
AGTGCGCCGGGCGTTCCGAAAGTTTGCTCTCCAGCTGCACCCAGATAAGA
ACGCCGCGCCAGACGCCCAAAAGGCATTCATTCGACTATCGGAAGCCCAC
GAGGTACTGCGAGACGTTGAGGAGCAGAAACATCTTTTGGGAAAGCTTCG
GCCACCGAAAAGAGAAGGATTCGAAGGAAGCAAGGAAGACGCATTGAATG
ATTCGACAACATCGTGGAAGTCTTTTTCCTTCGTCCGACCGACATGTACC
AGTACAAGCGGCAGCAACAACAGCAGCACCGACAGCAGCAGCACCGCGCC
TCAATCAAAAGGAACGTCTTTTTCATCGTCCCGAAGCTTCATAGACTTTC
TACGGGAGTGGGAAGACTTTGAAAGAGAGTACATGGACGAGTTGCGGGGT
AAACAAACTTCGCTGGAGGCGCAGGCGCGTAAGGAGAAGCGTCAGAGCCG
TCGGAGGGATGTGGAAGAATGTCAGGCGGCGGAGCGACGTATTTTACTCG
CGCACTTGATGGAAAGCGTGCGGGATGACGAGGATGAGGAAGAAGGGGAG
GATAAAAAGATAGGGAAAGGTGGGGTGAAGGAGGAGGGTGGGGTGGAGGA
GGAGCAGACTCAAAAACGGAAAGAGAACTCTTGGCAGGCTTTTTTGAATG
GGAAGAAACGTACGCGGACAGGTAATGGGGTAAAGCAGGGAGGTGGTCAG
AAGTGCAAGCGAGGAGGTGGAGAGGGTGGGGCGAAGGAAGGAAAGAGATC
TGTGTAG
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Synonyms
Publications