NO06G02190, NO06G02190 (gene) Nannochloropsis oceanica

Overview
NameNO06G02190
Unique NameNO06G02190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1675
Alignment locationchr6:638733..640407 -

Link to JBrowse

Properties
Property NameValue
DescriptionMeiosis-specific nuclear structural protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:638733..640407 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026504MNS1
Homology
The following BLAST results are available for this feature:
BLAST of NO06G02190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL090nonsL090Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR146ngnoR146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000245NSK000245Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02190.1NO06G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651490gene_6533Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02190.1NO06G02190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02190 ID=NO06G02190|Name=NO06G02190|organism=Nannochloropsis oceanica|type=gene|length=1675bp
ATGAGATCTACATCTCGTAGAAATCATGGCGGCGCTGTCCGTATGACAGC
TCATCGCTTGGAGCAGCGAGTCGTGCAGCAACGATTTCAAGAAACAAAAA
TTCAGgttcattggctttgaagggagaatgggaagacgcgagtcgcaaag
catacatttgtcacgcgggggtgcaattttcgataatcaaacgaactgct
cttcttctgcctcgtattttagaccctattaaaaattgtcctctccggct
cttgtccttgtcagctacctcacaccctcccctctcacctctcaataact
ccctccaacccatcacctccagAATATTCTTGCCTCGACAGCAGGAGATC
GCATATTGAATTACACGGCGGCATCCGAGGCCCGGATCATCAAACAGCGG
GAGCACCAGGATGCCAAGCGCGCGGCGGCGGCACGTGCCCTGGAGGAGGA
AGCTCGTGCGATGGAGGCAGAAAAGGAGGCCCAGCGACGGCAACAAGCCG
AAAGTGAAGCCCGTATTGCTGCGAAAGATGCTGAACGCAAACAGCGGGAG
CAGAAGGAATGTGAGCTCCAACGAATTTGCGAGACAAGCGACGAATTGCG
GGAGTTGGAAAAAGCATTAGCCATTGCGTACATGAACAAGGAGCGTGCCG
CTCAACACGAAGAGCGACAGCTGCTAGATCACTTGGACAAGGAATGGGCC
ATCCGCATCGATGAAGATATGGAAACACGTCGCCGGCTAGCGGTTCAGAC
GGATCGAGGTCGGGGAGCCGACCCACGCTTTGATCGACAGATGTTGAAGG
CAGACATCCAAAAGCAGTTGGTGGAGCAAGAACGACGCCGTCAGGAGCTG
GAGAGTGCCACCGCGGCCCAAGACAAAGCATTGGTCCAAGCTGCAGTGAA
ACGCGCGCAGCAAGAAGAAGCAGATCGGCATCGAGCATTGGCAAGGAAGA
GGGAAGAGGTCCAGCAGATGCACCGCAAGCACGAGGAGGCGCGGGAGCGC
ATTCAGCGCGAGCAGCAGCAGCGGGATGCAGAGGAGGAAGTACGTATTCA
ACACTACCAGGCCATGCAAATTGCTCGCAAGAGCCACATTCGGCAACGGC
AGGACGAACGCCGAGCGAGGCAGGAAGCGGTAGTTGCCAAGATTGTTGCG
GAGGCGAAGCAGAAGCAAGCGGACGAGGAGGAATTGGAGACGTTGCGGAC
ATTGCTGCACGCTGAGAAAGCAGAAGCCTCACGCCTGGCAAGGGAGGAGG
CGAAATGGATTAAAAAACAAAAAGATCGAGATGACCTCCGTCGCGCCCAG
GAGGAGCAACTTAGGCTCAAAGCCCGGCAAGTCGCCTGGGAGCGGGTGAG
GGAGGAGAAGATGGTGGCGGAGATGCAGGCCAAGTTCGAGGCCGAGAGTC
GACGTGAGGCAGATATCACAGCACATCGAAGGCAGGCAGACGCCACGCAT
CAGATGCGATTGCGGGAGCAGCTTGAAGACGGGCGGAGACGGGTGCAAGC
GGAACACGCTTCTGAGCATGGGCCGAGCCGGGAGGAAGCTGCGAAGGAGG
CGTACAAGCAACAAGTGGTGACTGAAGCTCGTAGACGGCTATTGAAGGAG
CATGCCTCATTATTAGGAGAATTTTTACCGAAAAACTTGGCCAAGGAAGT
CGAGGAAGGGAAGCGTTGTGATTGA
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protein sequence of NO06G02190.1

>NO06G02190.1-protein ID=NO06G02190.1-protein|Name=NO06G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MRSTSRRNHGGAVRMTAHRLEQRVVQQRFQETKIQNILASTAGDRILNYT
AASEARIIKQREHQDAKRAAAARALEEEARAMEAEKEAQRRQQAESEARI
AAKDAERKQREQKECELQRICETSDELRELEKALAIAYMNKERAAQHEER
QLLDHLDKEWAIRIDEDMETRRRLAVQTDRGRGADPRFDRQMLKADIQKQ
LVEQERRRQELESATAAQDKALVQAAVKRAQQEEADRHRALARKREEVQQ
MHRKHEEARERIQREQQQRDAEEEVRIQHYQAMQIARKSHIRQRQDERRA
RQEAVVAKIVAEAKQKQADEEELETLRTLLHAEKAEASRLAREEAKWIKK
QKDRDDLRRAQEEQLRLKARQVAWERVREEKMVAEMQAKFEAESRREADI
TAHRRQADATHQMRLREQLEDGRRRVQAEHASEHGPSREEAAKEAYKQQV
VTEARRRLLKEHASLLGEFLPKNLAKEVEEGKRCD*
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Synonyms
Publications