NO06G02170, NO06G02170 (gene) Nannochloropsis oceanica

Overview
NameNO06G02170
Unique NameNO06G02170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length849
Alignment locationchr6:634527..635375 +

Link to JBrowse

Properties
Property NameValue
DescriptionCytochrome c oxidase subunit VIa
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:634527..635375 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005751mitochondrial respiratory chain complex IV
GO:0005743mitochondrial inner membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf
IPR001349Cyt_c_oxidase_su6a
Homology
BLAST of NO06G02170 vs. NCBI_GenBank
Match: XP_002288823.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94259.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.0 bits (188), Expect = 4.200e-11
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   32 EEVEKWRKVS-IAATGIVVLFSLKE--MVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAER 106
            +E+ KW K+S + AT + VL  LK+  +VD     HG     PLPDYM I+ K FPWEC +C+LFD +C+KKC+AE+
Sbjct:   67 QEMWKWVKISAVVATPVCVLSVLKDIFLVDHVHRPHG-----PLPDYMNIQVKEFPWECETCALFDLECWKKCRAEQ 138          
BLAST of NO06G02170 vs. NCBI_GenBank
Match: CBJ28645.1 (cytochrome c oxidase subunit VIa [Ectocarpus siliculosus])

HSP 1 Score: 76.6 bits (187), Expect = 5.500e-11
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 0
Query:    1 MSSALTRAFRRVATTPRNVRRFGSSNGD--HGAEEVEKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAERAG 108
            M SAL RA  R                D  H AEE+ KW+K++ A  G++ L ++  +V           D P+P YM+IR+KP PW C+ C+L D+ CF KCKAER G
Sbjct:    1 MVSALVRAAVRXXXXXXXXXXXXXXXXDAAHAAEEMAKWKKMT-AGMGVLSL-AVTTLVLATEXXXXRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAEREG 107          
BLAST of NO06G02170 vs. NCBI_GenBank
Match: OEU07153.1 (hypothetical protein FRACYDRAFT_221304 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 74.3 bits (181), Expect = 2.700e-10
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 0
Query:   33 EVEKWRKVSI--AATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAERA 107
            E+  W K+SI     G V + +     D A   H    D P P+YM IRSK FPWEC SC+LFD DC+KKC+A++A
Sbjct:   69 ELWTWIKISIFVCVPGTVAMLA----KDFAIEEHHHRPDGPQPEYMSIRSKEFPWECDSCALFDLDCWKKCRADKA 140          
BLAST of NO06G02170 vs. NCBI_GenBank
Match: OEU14527.1 (hypothetical protein FRACYDRAFT_218563 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 73.9 bits (180), Expect = 3.500e-10
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 0
Query:   33 EVEKWRKVSI--AATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAERA 107
            E+  W K+SI     G V + +     D A   H    D P P+YM IRSK FPWEC SC+LFD DC+KKC+A++A
Sbjct:   66 ELWTWIKISIFVCIPGTVAMLA----KDFAIEEHHHRPDGPQPEYMSIRSKEFPWECDSCALFDLDCWKKCRADKA 137          
BLAST of NO06G02170 vs. NCBI_GenBank
Match: CCI40553.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 72.0 bits (175), Expect = 1.300e-9
Identity = 31/101 (30.69%), Postives = 55/101 (54.46%), Query Frame = 0
Query:    4 ALTRAFRRVAT--TPRNVRRFGSSNGDHGAEEVEKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCK 103
            +L R   R++T     N R+  S+      E+V +W+++S+       +F++  ++   G HH    +KP   Y+++R+KPFPW+ S C  FD +C +K K
Sbjct:    2 SLLRKLNRISTKSISSNARQMSSATEHEAKEQVARWKQISMGMIAFTSVFTVVTVISHLGEHHXXXXEKPEYAYLKLRNKPFPWKYSDCDFFDLECKRKAK 102          
BLAST of NO06G02170 vs. NCBI_GenBank
Match: XP_002180910.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47562.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 66.2 bits (160), Expect = 7.400e-8
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 0
Query:   35 EKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAER 106
            E WR V+I     + +  L          HG   ++ +P++M IR+K FPWEC  C LFD+ C+KKC+AE+
Sbjct:   68 EMWRWVNITFWVAIPICVLSAAYTFFFEEHGHRIEENVPEFMGIRTKEFPWECGECDLFDSKCWKKCRAEK 138          
BLAST of NO06G02170 vs. NCBI_GenBank
Match: XP_005838826.1 (hypothetical protein GUITHDRAFT_102457 [Guillardia theta CCMP2712] >EKX51846.1 hypothetical protein GUITHDRAFT_102457 [Guillardia theta CCMP2712])

HSP 1 Score: 64.7 bits (156), Expect = 2.100e-7
Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 0
Query:    1 MSSALTRAFRRVATTPRNVRRFGSSNGDHGAEEVEKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSD--KPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCK 103
            ++S  ++A R   T P+  R F       GA+E + W+ VS+    +V +    E       H+  H D  K    Y+ IR+K +PW C  C+LFD++C+K+CK
Sbjct:    9 LASVASKALRIPRTAPKASRSFAHG----GADESDFWKNVSLGGLVLVGVVGAWEYKVHMDHHNDPHMDPAKNTFPYIHIRNKQYPWSCGDCNLFDSECWKECK 108          
BLAST of NO06G02170 vs. NCBI_GenBank
Match: GAX24994.1 (hypothetical protein FisN_2Lh277 [Fistulifera solaris] >GAX12443.1 hypothetical protein FisN_2Hh277 [Fistulifera solaris])

HSP 1 Score: 63.2 bits (152), Expect = 6.200e-7
Identity = 28/80 (35.00%), Postives = 42/80 (52.50%), Query Frame = 0
Query:   28 DHGAEE--VEKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAER 106
            +H  EE   E WR V++     + +  L          H    +  LP+YM +RSK +PWEC  C+LFD  C++KC+A +
Sbjct:   61 EHPIEEEVAEMWRWVNLTFVVGIPIVLLSAFYSAFFDEHPHRFEGELPEYMNVRSKEYPWECGECNLFDMPCWQKCRAAK 140          
The following BLAST results are available for this feature:
BLAST of NO06G02170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
XP_002288823.14.200e-1149.35predicted protein [Thalassiosira pseudonana CCMP13... [more]
CBJ28645.15.500e-1139.45cytochrome c oxidase subunit VIa [Ectocarpus silic... [more]
OEU07153.12.700e-1047.37hypothetical protein FRACYDRAFT_221304 [Fragilario... [more]
OEU14527.13.500e-1047.37hypothetical protein FRACYDRAFT_218563 [Fragilario... [more]
CCI40553.11.300e-930.69unnamed protein product [Albugo candida][more]
XP_002180910.17.400e-839.44predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_005838826.12.100e-732.69hypothetical protein GUITHDRAFT_102457 [Guillardia... [more]
GAX24994.16.200e-735.00hypothetical protein FisN_2Lh277 [Fistulifera sola... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL090nonsL090Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR146ngnoR146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000243NSK000243Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02170.1NO06G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597268gene_6531Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02170.1NO06G02170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02170 ID=NO06G02170|Name=NO06G02170|organism=Nannochloropsis oceanica|type=gene|length=849bp
ATGgtaggtgtcatagtgtggtggacgtcggcagggccaaacgccccttg
tttctccccacacctgtgcatgccctcctcgagctccctttgcgcaacaa
acctggcctcacattacatacatctacgtacatatatgccatgcacagTC
CTCTGCATTGACTCGCGCCTTCCGCCGCGTGGCGACCACGCCCAGGAACG
TCCGTCGTTTCGGATCCTCTAACGGCGACCATGGTGgtaagttttctcat
caagaatggagagggatttggagcgaggaagcatggaatgcttttgtttg
aaattgctatggattgactttagaatgttaggcatctttaaggctcacgg
gaggcttgaggcagagaaatggtgagaggctcgagagagaaagaggagcc
tcgtcgtccgtgcttcttctatcaaatgcacgcctgctggccgtctaaag
gcgtctcctcgcggcagaatgaagttattgggattccggactgtccaagc
acaggttgcctgactcggtaagaatgtataaatacttatctctaacccct
cctcccctcccctctcctcccccccatccaaacacaaaacaacagCAGAG
GAGGTGGAAAAGTGGCGCAAAGTCTCCATCGCCGCTACGGGCATCGTCGT
CCTCTTTTCGCTCAAAGAGATGGTTGACATGGCCGGAGGCCACCACGGGG
CGCACAGCGACAAGCCTCTGCCGGACTACATGCAGATCCGCTCGAAGCCC
TTTCCCTGGGAGTGCTCCTCGTGCTCCTTGTTTGACACGGATTGCTTCAA
GAAGTGCAAGGCGGAGAGGGCAGGGGATTTGGTGGAGGACGACCACTAG
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protein sequence of NO06G02170.1

>NO06G02170.1-protein ID=NO06G02170.1-protein|Name=NO06G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MSSALTRAFRRVATTPRNVRRFGSSNGDHGAEEVEKWRKVSIAATGIVVL
FSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKK
CKAERAGDLVEDDH*
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Synonyms
Publications