NO06G02170.1, NO06G02170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02170.1
Unique NameNO06G02170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length345
Alignment locationchr6:634527..635375 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:634527..635375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G02170.1 vs.
Match: CBJ28645.1 (cytochrome c oxidase subunit VIa [Ectocarpus siliculosus])

HSP 1 Score: 91.3 bits (225), Expect = 2.100e-15
Identity = 48/109 (44.04%), Postives = 65/109 (59.63%), Query Frame = 0 
Query:    1 MSSALTRAF--RRVATTPRNVRRFGSSNGDHGAEEVEKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAERAG 108
            M SAL RA   R  A    + RR  S +  H AEE+ KW+K++ A  G++ L ++  +V     HH    D P+P YM+IR+KP PW C+ C+L D+ CF KCKAER G
Sbjct:    1 MVSALVRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMT-AGMGVLSL-AVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAEREG 107
The following BLAST results are available for this feature:
BLAST of NO06G02170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28645.12.100e-1544.04cytochrome c oxidase subunit VIa [Ectocarpus silic... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02170NO06G02170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02170.1NO06G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02170.1.cds1NO06G02170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02170.1.cds2NO06G02170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02170.1.cds3NO06G02170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02170.1 ID=NO06G02170.1|Name=NO06G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=345bp
ATGTCCTCTGCATTGACTCGCGCCTTCCGCCGCGTGGCGACCACGCCCAG
GAACGTCCGTCGTTTCGGATCCTCTAACGGCGACCATGGTGCAGAGGAGG
TGGAAAAGTGGCGCAAAGTCTCCATCGCCGCTACGGGCATCGTCGTCCTC
TTTTCGCTCAAAGAGATGGTTGACATGGCCGGAGGCCACCACGGGGCGCA
CAGCGACAAGCCTCTGCCGGACTACATGCAGATCCGCTCGAAGCCCTTTC
CCTGGGAGTGCTCCTCGTGCTCCTTGTTTGACACGGATTGCTTCAAGAAG
TGCAAGGCGGAGAGGGCAGGGGATTTGGTGGAGGACGACCACTAG
back to top

protein sequence of NO06G02170.1

>NO06G02170.1-protein ID=NO06G02170.1-protein|Name=NO06G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MSSALTRAFRRVATTPRNVRRFGSSNGDHGAEEVEKWRKVSIAATGIVVL
FSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKK
CKAERAGDLVEDDH*
back to top

mRNA from alignment at chr6:634527..635375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02170.1 ID=NO06G02170.1|Name=NO06G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp|location=Sequence derived from alignment at chr6:634527..635375+ (Nannochloropsis oceanica)
ATGGTAGGTGTCATAGTGTGGTGGACGTCGGCAGGGCCAAACGCCCCTTG
TTTCTCCCCACACCTGTGCATGCCCTCCTCGAGCTCCCTTTGCGCAACAA
ACCTGGCCTCACATTACATACATCTACGTACATATATGCCATGCACAGTC
CTCTGCATTGACTCGCGCCTTCCGCCGCGTGGCGACCACGCCCAGGAACG
TCCGTCGTTTCGGATCCTCTAACGGCGACCATGGTGGTAAGTTTTCTCAT
CAAGAATGGAGAGGGATTTGGAGCGAGGAAGCATGGAATGCTTTTGTTTG
AAATTGCTATGGATTGACTTTAGAATGTTAGGCATCTTTAAGGCTCACGG
GAGGCTTGAGGCAGAGAAATGGTGAGAGGCTCGAGAGAGAAAGAGGAGCC
TCGTCGTCCGTGCTTCTTCTATCAAATGCACGCCTGCTGGCCGTCTAAAG
GCGTCTCCTCGCGGCAGAATGAAGTTATTGGGATTCCGGACTGTCCAAGC
ACAGGTTGCCTGACTCGGTAAGAATGTATAAATACTTATCTCTAACCCCT
CCTCCCCTCCCCTCTCCTCCCCCCCATCCAAACACAAAACAACAGCAGAG
GAGGTGGAAAAGTGGCGCAAAGTCTCCATCGCCGCTACGGGCATCGTCGT
CCTCTTTTCGCTCAAAGAGATGGTTGACATGGCCGGAGGCCACCACGGGG
CGCACAGCGACAAGCCTCTGCCGGACTACATGCAGATCCGCTCGAAGCCC
TTTCCCTGGGAGTGCTCCTCGTGCTCCTTGTTTGACACGGATTGCTTCAA
GAAGTGCAAGGCGGAGAGGGCAGGGGATTTGGTGGAGGACGACCACTAG
back to top

Coding sequence (CDS) from alignment at chr6:634527..635375+

>NO06G02170.1 ID=NO06G02170.1|Name=NO06G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at chr6:634527..635375+ (Nannochloropsis oceanica)
ATGTCCTCTGCATTGACTCGCGCCTTCCGCCGCGTGGCGACCACGCCCAG
GAACGTCCGTCGTTTCGGATCCTCTAACGGCGACCATGGTGCAGAGGAGG
TGGAAAAGTGGCGCAAAGTCTCCATCGCCGCTACGGGCATCGTCGTCCTC
TTTTCGCTCAAAGAGATGGTTGACATGGCCGGAGGCCACCACGGGGCGCA
CAGCGACAAGCCTCTGCCGGACTACATGCAGATCCGCTCGAAGCCCTTTC
CCTGGGAGTGCTCCTCGTGCTCCTTGTTTGACACGGATTGCTTCAAGAAG
TGCAAGGCGGAGAGGGCAGGGGATTTGGTGGAGGACGACCACTAG
back to top
Synonyms
Publications