NO06G02030, NO06G02030 (gene) Nannochloropsis oceanica

Overview
NameNO06G02030
Unique NameNO06G02030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1076
Alignment locationchr6:598302..599377 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:598302..599377 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G02030 vs. NCBI_GenBank
Match: EWM26252.1 (hypothetical protein Naga_100025g27 [Nannochloropsis gaditana])

HSP 1 Score: 306.6 bits (784), Expect = 6.400e-80
Identity = 165/216 (76.39%), Postives = 180/216 (83.33%), Query Frame = 0
Query:   12 LFLACCFTTFAFVGHSALPSTRISTVLTAIRATRTRGVMTAGLFDGLFLSDTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATASQNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVDESASLGNTLKRLFGFGKESKPTTLPQGPGSDGPGAARGKGKSGYGGGKKK 228
            L L C  T  AFV     P+ ++S      +  R RGVMTAGLFDGLFLSD+EKE+AYQKQQEILRARQNP+KQKAYFQEVNKRRA A++N+KEKFNLSKNG+QDPA+KWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVD+GYVDESASLGNT+KRLFGFGK SKPT LPQG  SDGP +     K G  GG KK
Sbjct:   10 LLLTCASTALAFV---VRPAYQVS------QLRRIRGVMTAGLFDGLFLSDSEKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRAEANKNYKEKFNLSKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASKPTMLPQGLDSDGPNS-----KKGAKGGNKK 211          
BLAST of NO06G02030 vs. NCBI_GenBank
Match: XP_005535702.1 (hypothetical protein CYME_CMF025C [Cyanidioschyzon merolae strain 10D] >BAM79416.1 hypothetical protein CYME_CMF025C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 87.8 bits (216), Expect = 4.700e-14
Identity = 71/190 (37.37%), Postives = 94/190 (49.47%), Query Frame = 0
Query:   42 RATRTRG---VMTAGLFDGL--FLSDTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRR--------ATASQNFKEKFNLSKNGQ--QDPAVKWMELRKKGVIGEREKYEQYG-ETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVDESASLGNTLKRLFGFGKESKPTTLPQGP--GSDGPGAA 214
            RA RTR     + AGLFD       D E + A  KQ E  R R+  E+Q+   +++  RR        A   Q  +E+ N  +  +  +DP + W   R+K       K   YG E  RGII+P   FG  ++D GERFDLRLPYVDEGYVDE A +   +     FG+  KP    + P  G +G  AA
Sbjct:   37 RAPRTRATSRAVIAGLFDAFKPLFGDGENDRAQNKQLESQREREIAEQQRIMREKLEARRAGRHLEGVAERRQAVQEQLNAKEKPKPGEDPLIAWERQREKERTAGTWKEVGYGEEPKRGIILPWPSFGIPRFDYGERFDLRLPYVDEGYVDEDADIMGKV-----FGRRRKPPESQRSPENGDNGTNAA 221          
BLAST of NO06G02030 vs. NCBI_GenBank
Match: XP_005647199.1 (hypothetical protein COCSUDRAFT_63797 [Coccomyxa subellipsoidea C-169] >EIE22655.1 hypothetical protein COCSUDRAFT_63797 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 82.4 bits (202), Expect = 2.000e-12
Identity = 56/142 (39.44%), Postives = 75/142 (52.82%), Query Frame = 0
Query:   64 EKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATASQNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVDESASLGNTLKRLFGFGKESKPTTLPQGP 206
            EKEDAY+ QQ++LR R+    QK    +VN RRA       +K+N     ++    K  E ++   + ER         N  IIIP  PFG  +YD+GERFDL+  Y D G+VDE A  G  +KR FG GK+       +GP
Sbjct:   18 EKEDAYRAQQDVLRRRREGSWQK----DVNARRAKV-----KKYNTDPEYKK----KIDEDKRARALAERPPDPIVNAFN--IIIPLAPFGIPEYDQGERFDLKAKYCDNGWVDEEAEFGKQVKRFFGMGKKKSDDESEEGP 144          
BLAST of NO06G02030 vs. NCBI_GenBank
Match: CEM34457.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 80.5 bits (197), Expect = 7.500e-12
Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 0
Query:   62 DTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATAS--QNFKEKFNLSKNGQ------QDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVD 178
            D  K + ++KQQEIL+ R+NPEK K Y+ ++  RRA AS  +  K++    + G+      Q     W   R++G+IG +     Y E  R I +P  PFG  KYD+GERFDLR P+V+ G+V+
Sbjct:   44 DPVKAERFKKQQEILQRRRNPEKLKEYYSDLADRRAKASKLEILKKQAWAERPGETAAQRKQRIEATWESFREQGLIG-KPGTSTYEEPERSIPLPVAPFGLEKYDQGERFDLRSPWVESGWVN 166          
BLAST of NO06G02030 vs. NCBI_GenBank
Match: OSX78965.1 (hypothetical protein BU14_0093s0008 [Porphyra umbilicalis])

HSP 1 Score: 74.7 bits (182), Expect = 4.100e-10
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 0
Query:   61 SDTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATASQNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVDESASLGNTLKRLFGFGK---ESKP 199
            S+ +++     Q+ +L  R++ +    Y  EV +RRA    +F+    L     +DP   W     +G+I +   YE   E   GI +P   FG  KYD GERFDLRLP+V+ GY D  A +   + R FGFGK   E KP
Sbjct:    7 SEEQRQAEVDAQRAMLARRRDEKAAAKYMAEVEQRRADTEAHFQSN-KLDIQPGEDPIEAWRRKEARGLI-KPLGYEDVPE--GGIPMPMASFGIPKYDNGERFDLRLPHVEVGYEDPDADIMGKIGRFFGFGKKPQEKKP 143          
BLAST of NO06G02030 vs. NCBI_GenBank
Match: OEU09305.1 (hypothetical protein FRACYDRAFT_195476 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 72.8 bits (177), Expect = 1.600e-9
Identity = 61/169 (36.09%), Postives = 82/169 (48.52%), Query Frame = 0
Query:   43 ATRTRGVM--TAGLFDGLFLSDT----EKEDAYQKQQEILRARQNPEKQK-AYFQEVNKRRATA----SQNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNR--GIIIPQVPFG-------NTKYDEGERFDLRLPYVDEGYVDESASLGNTLKRLFG 192
            +TRT+  M    G+FD      T    E  D Y KQQ IL  R+ P+ Q+  YFQ+V +RR TA    S N+  +    K G +DP  +W + R  G IG+ E  +QYG+  +  GI +P   FG                  LRLPY D+GYVDE + +   L   FG
Sbjct:    3 STRTQHSMELQMGMFDNWRAGGTAGGDELNDEYAKQQRILEERRAPKSQRDKYFQKVEQRRQTADKERSDNWAWQTKTYKKG-EDPIDEWKKRRADGTIGDLE--DQYGDPKKIGGIPLPMASFGVGGXXXXXXXXXXXXXXXLRLPYADQGYVDEDSDVMGKLSGFFG 168          
BLAST of NO06G02030 vs. NCBI_GenBank
Match: XP_002951388.1 (hypothetical protein VOLCADRAFT_120951 [Volvox carteri f. nagariensis] >EFJ47564.1 hypothetical protein VOLCADRAFT_120951 [Volvox carteri f. nagariensis])

HSP 1 Score: 72.4 bits (176), Expect = 2.000e-9
Identity = 52/153 (33.99%), Postives = 76/153 (49.67%), Query Frame = 0
Query:   62 DTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATASQNF--------KEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVDES-----ASLGNTLKRLFGFGKESKPTTL 202
            D+EKE+ ++ QQE+++ R    K     +E N+RR   ++          +EK  L++    D    W    K+  I E+         N GI++P +PFG  KYDEGERFDLR PY D G+VD       A L     ++  F  +S+PT L
Sbjct:   41 DSEKEEQWRLQQELIQKR----KTGQLIKEANERRKKVAEELASRKELRRREKDALARGEMPDTLKSWKPYDKE--IDEK--------ANSGIVVPLLPFGIKKYDEGERFDLRSPYSDAGWVDPEEQDAWAGLKKIGTKILNFSGKSEPTEL 179          
BLAST of NO06G02030 vs. NCBI_GenBank
Match: KXZ47774.1 (hypothetical protein GPECTOR_33g656 [Gonium pectorale])

HSP 1 Score: 68.6 bits (166), Expect = 2.900e-8
Identity = 49/153 (32.03%), Postives = 75/153 (49.02%), Query Frame = 0
Query:   62 DTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATASQNF--------KEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVDES-----ASLGNTLKRLFGFGKESKPTTL 202
            D EKE+ ++ QQE++  R++ +      +E N+RR   ++          +EK  L++    D    W    K+  I E+         N GI++P +PFG  KYDEGERFDLR PY D G+VD       + L     ++  F  +S+P  L
Sbjct:   23 DDEKEEQWRVQQELMEKRRSGQ----LIKEANERRKKVAETVESRKELRRREKEALARGEMPDTLQNWKPYDKE--IDEK--------ANSGIVVPLLPFGIKKYDEGERFDLRSPYSDAGWVDPDEQDAWSGLKKIGTKILNFSGKSEPAEL 161          
BLAST of NO06G02030 vs. NCBI_GenBank
Match: GAX84385.1 (hypothetical protein CEUSTIGMA_g11807.t1 [Chlamydomonas eustigma])

HSP 1 Score: 67.0 bits (162), Expect = 8.600e-8
Identity = 59/178 (33.15%), Postives = 84/178 (47.19%), Query Frame = 0
Query:   21 FAFVGHSALPSTRISTVLTAIRATRTRGVMTAGLFDGLFLSDTEKEDAYQKQQEILRARQ--------NPEKQKAYFQEVNKRRATASQNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVD-ESASLGNTLKRL 190
            F    HS++ ST     L+     RT  +   G         T+K+D ++ QQE+L AR+        N  ++K   QE    R  A Q  +EK +L+K    D    W          +  K     +   GI+IP +PFG  +YDEGERFDLR PY DEG+VD E   + + LK++
Sbjct:    3 FQIKSHSSINST---DRLSRHPRVRTNALFGWGKDKESTQKSTDKDDQFRIQQELLAARRTGSLIKEANDRRRKV--QETVAERKAARQ--QEKDSLAKGIIPDSLKDW----------KNYKTRDAEQGTSGIVIPLLPFGKKEYDEGERFDLRSPYADEGWVDPEETDMWSGLKKI 163          
BLAST of NO06G02030 vs. NCBI_GenBank
Match: XP_001696005.1 (predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 65.5 bits (158), Expect = 2.500e-7
Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 0
Query:   68 AYQKQQEILRARQNPEKQKAYFQEVNKRRATASQNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVD-ESASLGNTLK----RLFGFGKESKPTTL 202
            A Q+ +E+++ R    K     +E N RR   ++  +E+ NL    ++  A   M    +G     ++ +Q G  + GI++P +PFG  KYDEGERFDLR PY D G+VD E     + LK    ++  F  +S+PT L
Sbjct:   19 AAQRTRELIQKR----KSGVLIKEANDRRRKVAETLQERKNLRAAEKEALARGEMPETLQGWKPYEKEIDQKG-ISGGIVVPLLPFGIKKYDEGERFDLRSPYSDAGWVDPEEQDAWSGLKKIGTKILNFSGKSEPTEL 152          
The following BLAST results are available for this feature:
BLAST of NO06G02030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
EWM26252.16.400e-8076.39hypothetical protein Naga_100025g27 [Nannochlorops... [more]
XP_005535702.14.700e-1437.37hypothetical protein CYME_CMF025C [Cyanidioschyzon... [more]
XP_005647199.12.000e-1239.44hypothetical protein COCSUDRAFT_63797 [Coccomyxa s... [more]
CEM34457.17.500e-1240.32unnamed protein product [Vitrella brassicaformis C... [more]
OSX78965.14.100e-1036.17hypothetical protein BU14_0093s0008 [Porphyra umbi... [more]
OEU09305.11.600e-936.09hypothetical protein FRACYDRAFT_195476 [Fragilario... [more]
XP_002951388.12.000e-933.99hypothetical protein VOLCADRAFT_120951 [Volvox car... [more]
KXZ47774.12.900e-832.03hypothetical protein GPECTOR_33g656 [Gonium pector... [more]
GAX84385.18.600e-833.15hypothetical protein CEUSTIGMA_g11807.t1 [Chlamydo... [more]
XP_001696005.12.500e-734.53predicted protein [Chlamydomonas reinhardtii][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000258NSK000258Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02030.1NO06G02030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597214gene_6513Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g27gene4304Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02030.1NO06G02030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02030 ID=NO06G02030|Name=NO06G02030|organism=Nannochloropsis oceanica|type=gene|length=1076bp
AAAACACACAGAACAGACTCCCCTTTCCTTGCCCCAGCTCCCGCCATGAA
GGCCTCCCTCTATCTCGTCCTCGCGACGCTCTTCCTAGCATGCTGCTTCA
CGACGTTTGCCTTTGTGGGTCACTCCGCCTTGCCATCAACCAGGATCTCC
ACGGTATTAACAGCAATTCGCGCGACGCGCACCCGTGGCGTCATGACCGC
TGGGCTCTTCGATGGCCTCTTTTTGTCGGACACCGAGAAGGAGGATGCGT
ACCAAAAGCAGCAAGAAATTCTGCGCGCCCGTCAAAACCCAGAAAAACAA
AAGGCGTACTTTCAAGAGGTGAACAAGCGCCGAGCGACCGCCAGTCAAAA
TTTCAAGGAGAAATTTAACCTGTCCAAGAACGGGCAACAGGACCCAGCCG
TCAAATGGATGGAGTTGAGGAAGAAAGGCGTGATAGGGGAACGGGAGAAG
TACGAGCAGTACGGGGAGACGAATAGGGGCATCATTATTCCTCAGgtaca
ttgttgtacgaaatttggaccaccttcacagtcccatgtgcgcattatct
cccttccttctttctccctcctctcttcctccccttgcagGTCCCCTTCG
GCAATACTAAGTACGACGAGGGCGAGCGGTTCGACTTGCGTCTGCCTTAT
GTGGATGAGGGATACGTAGATGAATCTGCCAGCTTGGGGAATACCTTGAA
ACGATTGTTTGGCTTTGGAAAGGAGTCGAAACCCACGACGCTACCGCAGG
GCCCCGGATCGGATGGGCCAGGCGCCGCGAGAGGAAAGGGGAAAAGTGGG
TATGGTGGAGGGAAGAAGAAGTAGATAGCAGCAGGAGGGGCTGCAAGTAC
ATCTTAGAAATATAGCGAGTCAAAGGAACAGAAGAGAGGTGCCTTGTGAA
GAGAGGTGCCTTGTGAAGGTGTGGGCGGTGTGTTGGCATGCGGGAGGAGC
AGTAGTAGCCAAGGGTTGTTATTTATTGTGTGTTGCGTTTAGTTTTCATT
CTTTTTATTTCATTTTGTTACATATTGCCAGTGGCGGGAAAAGGAAGGGA
AAAGAACAATCGTACCAACCCCGAAT
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protein sequence of NO06G02030.1

>NO06G02030.1-protein ID=NO06G02030.1-protein|Name=NO06G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKASLYLVLATLFLACCFTTFAFVGHSALPSTRISTVLTAIRATRTRGVM
TAGLFDGLFLSDTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATAS
QNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQ
VPFGNTKYDEGERFDLRLPYVDEGYVDESASLGNTLKRLFGFGKESKPTT
LPQGPGSDGPGAARGKGKSGYGGGKKK*
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Synonyms
Publications