NO06G02030.1, NO06G02030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02030.1
Unique NameNO06G02030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length981
Alignment locationchr6:598302..599377 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:598302..599377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02030.1 vs.
Match: EWM26252.1 (hypothetical protein Naga_100025g27 [Nannochloropsis gaditana])

HSP 1 Score: 306.2 bits (783), Expect = 8.400e-80
Identity = 165/216 (76.39%), Postives = 180/216 (83.33%), Query Frame = 0
Query:   12 LFLACCFTTFAFVGHSALPSTRISTVLTAIRATRTRGVMTAGLFDGLFLSDTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATASQNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVDESASLGNTLKRLFGFGKESKPTTLPQGPGSDGPGAARGKGKSGYGGGKKK 228
            L L C  T  AFV     P+ ++S +       R RGVMTAGLFDGLFLSD+EKE+AYQKQQEILRARQNP+KQKAYFQEVNKRRA A++N+KEKFNLSKNG+QDPA+KWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVD+GYVDESASLGNT+KRLFGFGK SKPT LPQG  SDGP +     K G  GG KK
Sbjct:   10 LLLTCASTALAFV---VRPAYQVSQL------RRIRGVMTAGLFDGLFLSDSEKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRAEANKNYKEKFNLSKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASKPTMLPQGLDSDGPNS-----KKGAKGGNKK 211          
The following BLAST results are available for this feature:
BLAST of NO06G02030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26252.18.400e-8076.39hypothetical protein Naga_100025g27 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02030NO06G02030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02030.1NO06G02030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02030.1.cds1NO06G02030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02030.1.cds2NO06G02030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02030.1 ID=NO06G02030.1|Name=NO06G02030.1|organism=Nannochloropsis oceanica|type=mRNA|length=981bp
AAAACACACAGAACAGACTCCCCTTTCCTTGCCCCAGCTCCCGCCATGAA
GGCCTCCCTCTATCTCGTCCTCGCGACGCTCTTCCTAGCATGCTGCTTCA
CGACGTTTGCCTTTGTGGGTCACTCCGCCTTGCCATCAACCAGGATCTCC
ACGGTATTAACAGCAATTCGCGCGACGCGCACCCGTGGCGTCATGACCGC
TGGGCTCTTCGATGGCCTCTTTTTGTCGGACACCGAGAAGGAGGATGCGT
ACCAAAAGCAGCAAGAAATTCTGCGCGCCCGTCAAAACCCAGAAAAACAA
AAGGCGTACTTTCAAGAGGTGAACAAGCGCCGAGCGACCGCCAGTCAAAA
TTTCAAGGAGAAATTTAACCTGTCCAAGAACGGGCAACAGGACCCAGCCG
TCAAATGGATGGAGTTGAGGAAGAAAGGCGTGATAGGGGAACGGGAGAAG
TACGAGCAGTACGGGGAGACGAATAGGGGCATCATTATTCCTCAGGTCCC
CTTCGGCAATACTAAGTACGACGAGGGCGAGCGGTTCGACTTGCGTCTGC
CTTATGTGGATGAGGGATACGTAGATGAATCTGCCAGCTTGGGGAATACC
TTGAAACGATTGTTTGGCTTTGGAAAGGAGTCGAAACCCACGACGCTACC
GCAGGGCCCCGGATCGGATGGGCCAGGCGCCGCGAGAGGAAAGGGGAAAA
GTGGGTATGGTGGAGGGAAGAAGAAGTAGATAGCAGCAGGAGGGGCTGCA
AGTACATCTTAGAAATATAGCGAGTCAAAGGAACAGAAGAGAGGTGCCTT
GTGAAGAGAGGTGCCTTGTGAAGGTGTGGGCGGTGTGTTGGCATGCGGGA
GGAGCAGTAGTAGCCAAGGGTTGTTATTTATTGTGTGTTGCGTTTAGTTT
TCATTCTTTTTATTTCATTTTGTTACATATTGCCAGTGGCGGGAAAAGGA
AGGGAAAAGAACAATCGTACCAACCCCGAAT
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protein sequence of NO06G02030.1

>NO06G02030.1-protein ID=NO06G02030.1-protein|Name=NO06G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKASLYLVLATLFLACCFTTFAFVGHSALPSTRISTVLTAIRATRTRGVM
TAGLFDGLFLSDTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATAS
QNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQ
VPFGNTKYDEGERFDLRLPYVDEGYVDESASLGNTLKRLFGFGKESKPTT
LPQGPGSDGPGAARGKGKSGYGGGKKK*
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mRNA from alignment at chr6:598302..599377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02030.1 ID=NO06G02030.1|Name=NO06G02030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp|location=Sequence derived from alignment at chr6:598302..599377- (Nannochloropsis oceanica)
AAAACACACAGAACAGACTCCCCTTTCCTTGCCCCAGCTCCCGCCATGAA GGCCTCCCTCTATCTCGTCCTCGCGACGCTCTTCCTAGCATGCTGCTTCA CGACGTTTGCCTTTGTGGGTCACTCCGCCTTGCCATCAACCAGGATCTCC ACGGTATTAACAGCAATTCGCGCGACGCGCACCCGTGGCGTCATGACCGC TGGGCTCTTCGATGGCCTCTTTTTGTCGGACACCGAGAAGGAGGATGCGT ACCAAAAGCAGCAAGAAATTCTGCGCGCCCGTCAAAACCCAGAAAAACAA AAGGCGTACTTTCAAGAGGTGAACAAGCGCCGAGCGACCGCCAGTCAAAA TTTCAAGGAGAAATTTAACCTGTCCAAGAACGGGCAACAGGACCCAGCCG TCAAATGGATGGAGTTGAGGAAGAAAGGCGTGATAGGGGAACGGGAGAAG TACGAGCAGTACGGGGAGACGAATAGGGGCATCATTATTCCTCAGGTACA TTGTTGTACGAAATTTGGACCACCTTCACAGTCCCATGTGCGCATTATCT CCCTTCCTTCTTTCTCCCTCCTCTCTTCCTCCCCTTGCAGGTCCCCTTCG GCAATACTAAGTACGACGAGGGCGAGCGGTTCGACTTGCGTCTGCCTTAT GTGGATGAGGGATACGTAGATGAATCTGCCAGCTTGGGGAATACCTTGAA ACGATTGTTTGGCTTTGGAAAGGAGTCGAAACCCACGACGCTACCGCAGG GCCCCGGATCGGATGGGCCAGGCGCCGCGAGAGGAAAGGGGAAAAGTGGG TATGGTGGAGGGAAGAAGAAGTAGATAGCAGCAGGAGGGGCTGCAAGTAC ATCTTAGAAATATAGCGAGTCAAAGGAACAGAAGAGAGGTGCCTTGTGAA GAGAGGTGCCTTGTGAAGGTGTGGGCGGTGTGTTGGCATGCGGGAGGAGC AGTAGTAGCCAAGGGTTGTTATTTATTGTGTGTTGCGTTTAGTTTTCATT CTTTTTATTTCATTTTGTTACATATTGCCAGTGGCGGGAAAAGGAAGGGA AAAGAACAATCGTACCAACCCCGAAT
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Coding sequence (CDS) from alignment at chr6:598302..599377-

>NO06G02030.1 ID=NO06G02030.1|Name=NO06G02030.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr6:598302..599377- (Nannochloropsis oceanica)
ATGAAGGCCTCCCTCTATCTCGTCCTCGCGACGCTCTTCCTAGCATGCTG
CTTCACGACGTTTGCCTTTGTGGGTCACTCCGCCTTGCCATCAACCAGGA
TCTCCACGGTATTAACAGCAATTCGCGCGACGCGCACCCGTGGCGTCATG
ACCGCTGGGCTCTTCGATGGCCTCTTTTTGTCGGACACCGAGAAGGAGGA
TGCGTACCAAAAGCAGCAAGAAATTCTGCGCGCCCGTCAAAACCCAGAAA
AACAAAAGGCGTACTTTCAAGAGGTGAACAAGCGCCGAGCGACCGCCAGT
CAAAATTTCAAGGAGAAATTTAACCTGTCCAAGAACGGGCAACAGGACCC
AGCCGTCAAATGGATGGAGTTGAGGAAGAAAGGCGTGATAGGGGAACGGG
AGAAGTACGAGCAGTACGGGGAGACGAATAGGGGCATCATTATTCCTCAG
GTCCCCTTCGGCAATACTAAGTACGACGAGGGCGAGCGGTTCGACTTGCG
TCTGCCTTATGTGGATGAGGGATACGTAGATGAATCTGCCAGCTTGGGGA
ATACCTTGAAACGATTGTTTGGCTTTGGAAAGGAGTCGAAACCCACGACG
CTACCGCAGGGCCCCGGATCGGATGGGCCAGGCGCCGCGAGAGGAAAGGG
GAAAAGTGGGTATGGTGGAGGGAAGAAGAAGTAG
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Synonyms
Publications