NO06G01950, NO06G01950 (gene) Nannochloropsis oceanica

Overview
NameNO06G01950
Unique NameNO06G01950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length510
Alignment locationchr6:583222..583731 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:583222..583731 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029056Ribokinase-like
IPR011611PfkB_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016773phosphotransferase activity, alcohol group as acceptor
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO06G01950 vs. NCBI_GenBank
Match: EWM26219.1 (hypothetical protein Naga_100025g21 [Nannochloropsis gaditana])

HSP 1 Score: 142.1 bits (357), Expect = 1.600e-30
Identity = 76/129 (58.91%), Postives = 92/129 (71.32%), Query Frame = 0 
Query:   40 AARYFVDLGVRHVIVTRGALGAYALIEEKEKEGEGSRKRREVWQGCPRKEVVDTTGAGDSFNAGVLFRLIERLMRKKEGGREGGGEKEKDAWNEVLRMGCAMGSHIVTKMGASAPPRDREEILENLREI 169
            A RYFV+ GV+HVIVT GA GA+A +    KEGE   +RRE+ Q CP KE+VDTTGAGD+FNAGVL+ L+  L+ K      G G  E   W + LRMGCAMG H VTK GASAPPRD+ EI++NL+EI
Sbjct:  288 ACRYFVESGVKHVIVTLGAEGAFASV----KEGE---RRREMRQTCPLKEIVDTTGAGDAFNAGVLYSLLTDLVGK--NAAPGNGTTESWEWGQALRMGCAMGGHNVTKAGASAPPRDQLEIIDNLKEI 407
The following BLAST results are available for this feature:
BLAST of NO06G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26219.11.600e-3058.91hypothetical protein Naga_100025g21 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01950.1NO06G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01950.1NO06G01950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01950 ID=NO06G01950|Name=NO06G01950|organism=Nannochloropsis oceanica|type=gene|length=510bp
ATGGAGGCGTTGGCGATAACGAAGGGGATGATTGGGAGGAAACAAGGGAA
GAAGGACGACAATGTGGAGGAAAGGGAGGGGGAGGAGGAAGAAAAGAAAG
AAAGAGCGGTGGAGGCGGCGGCGAGGTATTTTGTAGATCTGGGGGTGAGG
CACGTGATTGTTACGAGAGGGGCCCTGGGGGCATATGCGTTAATTGAAGA
GAAAGAGAAGGAAGGAGAGGGAAGTCGGAAGAGGAGGGAGGTGTGGCAGG
GGTGTCCGAGGAAGGAGGTGGTGGATACGACAGGGGCAGGTGATTCCTTC
AACGCGGGAGTCTTGTTTAGGCTGATAGAGAGATTAATGAGAAAAAAGGA
GGGAGGGAGAGAAGGAGGAGGGGAAAAAGAGAAGGATGCGTGGAATGAAG
TGTTGAGGATGGGGTGTGCTATGGGAAGTCATATTGTGACAAAAATGGGG
GCGTCGGCGCCGCCGCGTGATAGGGAGGAGATTTTGGAGAATTTGAGGGA
GATTGAATGA
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protein sequence of NO06G01950.1

>NO06G01950.1-protein ID=NO06G01950.1-protein|Name=NO06G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MEALAITKGMIGRKQGKKDDNVEEREGEEEEKKERAVEAAARYFVDLGVR
HVIVTRGALGAYALIEEKEKEGEGSRKRREVWQGCPRKEVVDTTGAGDSF
NAGVLFRLIERLMRKKEGGREGGGEKEKDAWNEVLRMGCAMGSHIVTKMG
ASAPPRDREEILENLREIE*
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Synonyms
Publications