NO06G01950.1, NO06G01950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01950.1
Unique NameNO06G01950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length510
Alignment locationchr6:583222..583731 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:583222..583731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G01950.1 vs.
Match: EWM26219.1 (hypothetical protein Naga_100025g21 [Nannochloropsis gaditana])

HSP 1 Score: 142.5 bits (358), Expect = 1.200e-30
Identity = 76/136 (55.88%), Postives = 95/136 (69.85%), Query Frame = 0 
Query:   33 KERAVEAAARYFVDLGVRHVIVTRGALGAYALIEEKEKEGEGSRKRREVWQGCPRKEVVDTTGAGDSFNAGVLFRLIERLMRKKEGGREGGGEKEKDAWNEVLRMGCAMGSHIVTKMGASAPPRDREEILENLREI 169
            ++  +  A RYFV+ GV+HVIVT GA GA+A +    KEGE   +RRE+ Q CP KE+VDTTGAGD+FNAGVL+ L+  L+ K      G G  E   W + LRMGCAMG H VTK GASAPPRD+ EI++NL+EI
Sbjct:  281 RQNGIVDACRYFVESGVKHVIVTLGAEGAFASV----KEGE---RRREMRQTCPLKEIVDTTGAGDAFNAGVLYSLLTDLVGKNAA--PGNGTTESWEWGQALRMGCAMGGHNVTKAGASAPPRDQLEIIDNLKEI 407
The following BLAST results are available for this feature:
BLAST of NO06G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26219.11.200e-3055.88hypothetical protein Naga_100025g21 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01950NO06G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01950.1NO06G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01950.1.cds1NO06G01950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01950.1 ID=NO06G01950.1|Name=NO06G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
ATGGAGGCGTTGGCGATAACGAAGGGGATGATTGGGAGGAAACAAGGGAA
GAAGGACGACAATGTGGAGGAAAGGGAGGGGGAGGAGGAAGAAAAGAAAG
AAAGAGCGGTGGAGGCGGCGGCGAGGTATTTTGTAGATCTGGGGGTGAGG
CACGTGATTGTTACGAGAGGGGCCCTGGGGGCATATGCGTTAATTGAAGA
GAAAGAGAAGGAAGGAGAGGGAAGTCGGAAGAGGAGGGAGGTGTGGCAGG
GGTGTCCGAGGAAGGAGGTGGTGGATACGACAGGGGCAGGTGATTCCTTC
AACGCGGGAGTCTTGTTTAGGCTGATAGAGAGATTAATGAGAAAAAAGGA
GGGAGGGAGAGAAGGAGGAGGGGAAAAAGAGAAGGATGCGTGGAATGAAG
TGTTGAGGATGGGGTGTGCTATGGGAAGTCATATTGTGACAAAAATGGGG
GCGTCGGCGCCGCCGCGTGATAGGGAGGAGATTTTGGAGAATTTGAGGGA
GATTGAATGA
back to top

protein sequence of NO06G01950.1

>NO06G01950.1-protein ID=NO06G01950.1-protein|Name=NO06G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MEALAITKGMIGRKQGKKDDNVEEREGEEEEKKERAVEAAARYFVDLGVR
HVIVTRGALGAYALIEEKEKEGEGSRKRREVWQGCPRKEVVDTTGAGDSF
NAGVLFRLIERLMRKKEGGREGGGEKEKDAWNEVLRMGCAMGSHIVTKMG
ASAPPRDREEILENLREIE*
back to top

mRNA from alignment at chr6:583222..583731+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01950.1 ID=NO06G01950.1|Name=NO06G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=510bp|location=Sequence derived from alignment at chr6:583222..583731+ (Nannochloropsis oceanica)
ATGGAGGCGTTGGCGATAACGAAGGGGATGATTGGGAGGAAACAAGGGAA
GAAGGACGACAATGTGGAGGAAAGGGAGGGGGAGGAGGAAGAAAAGAAAG
AAAGAGCGGTGGAGGCGGCGGCGAGGTATTTTGTAGATCTGGGGGTGAGG
CACGTGATTGTTACGAGAGGGGCCCTGGGGGCATATGCGTTAATTGAAGA
GAAAGAGAAGGAAGGAGAGGGAAGTCGGAAGAGGAGGGAGGTGTGGCAGG
GGTGTCCGAGGAAGGAGGTGGTGGATACGACAGGGGCAGGTGATTCCTTC
AACGCGGGAGTCTTGTTTAGGCTGATAGAGAGATTAATGAGAAAAAAGGA
GGGAGGGAGAGAAGGAGGAGGGGAAAAAGAGAAGGATGCGTGGAATGAAG
TGTTGAGGATGGGGTGTGCTATGGGAAGTCATATTGTGACAAAAATGGGG
GCGTCGGCGCCGCCGCGTGATAGGGAGGAGATTTTGGAGAATTTGAGGGA
GATTGAATGA
back to top

Coding sequence (CDS) from alignment at chr6:583222..583731+

>NO06G01950.1 ID=NO06G01950.1|Name=NO06G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr6:583222..583731+ (Nannochloropsis oceanica)
ATGGAGGCGTTGGCGATAACGAAGGGGATGATTGGGAGGAAACAAGGGAA
GAAGGACGACAATGTGGAGGAAAGGGAGGGGGAGGAGGAAGAAAAGAAAG
AAAGAGCGGTGGAGGCGGCGGCGAGGTATTTTGTAGATCTGGGGGTGAGG
CACGTGATTGTTACGAGAGGGGCCCTGGGGGCATATGCGTTAATTGAAGA
GAAAGAGAAGGAAGGAGAGGGAAGTCGGAAGAGGAGGGAGGTGTGGCAGG
GGTGTCCGAGGAAGGAGGTGGTGGATACGACAGGGGCAGGTGATTCCTTC
AACGCGGGAGTCTTGTTTAGGCTGATAGAGAGATTAATGAGAAAAAAGGA
GGGAGGGAGAGAAGGAGGAGGGGAAAAAGAGAAGGATGCGTGGAATGAAG
TGTTGAGGATGGGGTGTGCTATGGGAAGTCATATTGTGACAAAAATGGGG
GCGTCGGCGCCGCCGCGTGATAGGGAGGAGATTTTGGAGAATTTGAGGGA
GATTGAATGA
back to top
Synonyms
Publications