NO06G01560, NO06G01560 (gene) Nannochloropsis oceanica

Overview
NameNO06G01560
Unique NameNO06G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2754
Alignment locationchr6:489516..492269 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:489516..492269 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
Homology
The following BLAST results are available for this feature:
BLAST of NO06G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000297NSK000297Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01560.1NO06G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01560.1NO06G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01560 ID=NO06G01560|Name=NO06G01560|organism=Nannochloropsis oceanica|type=gene|length=2754bp
ATGAAGAAGCGCCCTAGAGCGATGCTTCTAAACCAGCACCGCTCCGTCCC
TTTCCTGACCCCGCCGGCTCCTCTCTCTGCAATAACTTCCTTCCAAGCCT
CGCCCTCTCCTGCCAGTGCGGCGGCCGCCGTCCTGGTCGATGGCCCTACT
CCAGGCCCTTGGGGATGGACCAGCGTGGCTTCACAGGACGGGCAGGTTCG
TGTGTACGACACTTCATCTTTTTTTGACGCTGAGCCTCAGATGGAAAAGC
CTCTGATGCTCGCACACCTGCTCCAGCCGGGTGAAAGCGGCCCGGGGCAA
CTGATTGCCCATACCTGGGGCAGCAGCAGCAGCAGCAGACAACATGATGT
GTCACAAGAAGCAGGTCGCAAGGAGAAGTGTCACTTTTTGGCCATTTTGC
ACCGAAGTGGGTGCGTCGTCCACCGCTTCCTCTCCACCCCCACCTCCGCC
CCAGTGCCTTGCGCCTTTCTCCGCCCCTGCGCCGACGCCCGCTGCATAGA
CATGCTCCTCTCTTTTCCCTCCTCAATTTCTTCAGCACTCACTGTGGCAT
TGGGCGGTAGTTTTGGATTGGAATTGCACCAAGTACCAGAGGAGGGGGTC
GCTCTCCCAACTCGTCACTTGCCCGGAGCCTCAGTATCTCTCCTTCGTTT
CTCCCCCGATGGCCGGTATTTGGCTGTGGCTTGTTTAGACGGACGGGTTG
GCGTATTAAAAGTAGCACACTTGCTGGAAGAGCAGCAGCAGCAGCAGGAA
GAGCGACAACTCCAAAACGAATGGGCATGTGCGGTCATCAAGGGAGAGCG
TGCGACGTGCCTGGCTTTCTCCTCCTCAAGCGACAGACTGGCAGTGGTAT
GCGCAGACGGGAACACCATTATGCTTCGCCCGCCTTCGTTGTCTTCCTCC
TCTTCATCCAGCTTCCATTCCTTATGGCGATGCTCCCCCGCTTTTCAATC
CTTCCTCCGTGCGCCTCTCCTCATCTCACCCCCTGCCGGCACAAGCTCCT
CCCTCTGTAATGCATGCACTACTTCCCTTCTCACGACCAGCAGCAGCAGC
AGCAACGATAACTGGATCAGTGGTTCACCCCTTCCCTGCCGACCCTACCT
CTCCTGGAGTCCCGACGACAATTTTTTGATGATCACTTTTCCTGGCGTGA
GCAACAACAAAAGCAGCAGCAGCAATAGTAGTAGTAATGATGGAGGGAAT
CCGCCGCGGTTGGTGGTGCTAGAGGCAGACAGTGGAGCGACGCGGCAAGT
ATTGTTATTGCCGCGTCCGTGGCAAGGAATGTGTGGAGGAGGAGGAGGAG
GTGGTGGAGGGAGGGTGCTAGGAGTAGATGACCTGGGGGCGCTGCATGTG
TTGCAGTGGAAAGGAGGAAGGGCGGGAAGGACAAGGGGAGTAAGGCAGGC
GTTATTGGCTTGCACGACGACGGGGGATGTGTATGGCTTGAATAGGGAGG
ACCAGGAAATGGGCGAGAAAGGAGAGGAAGGAGTGTTGGAGGAGAGTCTG
ACGTTAATTTGGACAAAAAGAAGAGGGGATGAGAAGAGGAAGAATGAGGA
GCAGGAAAGGAAAGAGATGAAAGCAACATCAACGATGACGCTTCGCGCTC
CTTTTTTCTCCACCCACGCCTGTGCGCTTTGGCAGAAACGAGGCCATGAG
GTGGTGTGCTTTGAAGGGGGAAGGGGAAGAGGATTGGGCTCACGTTGGTG
TCGACAGCCGCAGAGCAAGTGTAAAATCGTGATAGGTGAGAAATGGTTGG
GTGTGAGCTTTCCTGAGGTGCTTTTCCTTCATCCATGGAGGGACGATGCG
GAAAAGGGGGAGGAAAAGAAGGAGGAAGAGGCGGAATGGCAGATGTGGCA
AGGTTGGTGGGGGAGTGGGCAGAATTTGCAGAGTGCCGCGTTTGTGGAGG
GGAAAGCGGAGGGGGAGTTGAAGGTGCTTGCTTTGTTTCTATCTGAGAAT
GACCAGCATGACCACCACCACCACCAGCAGCAGCAGCAACGAATATCACT
GTGGTTGGAATTGCTGTTGGCTTGCGGTGATGACTCTTCCACTCCCTCGT
CCTCTTCCCCCGCCGCTTCTTTGTCTGTCCCACTTGTTCTGCCTCAAGAG
GAGGCGCAGTTCAAGCCTTTCTCCTGGCGTTGGTGTATTCTGACAAGCGA
GACCAAAAGTAAAGACAATAGTAGCGGCAGCAGCAGTAGCAGTAGCAGTA
ACGACATAAAGTTTGTGGTGTTAGGGTGGCAGTTAGGAACAGCAGCTGCG
ACCGTCGCAGCCAACGCCCCCCACTTTCTTCATGTGTGGAGGGGCCAGAT
CCAAAGACCAACACCACCAACTACCACTGCAACTGTTGCTGCTACCACTC
TATCTAGTGCGGAAGCTGCTGCTGCTACCTCCATGATACAGCTTTCGAGC
GAAGCTCCTCTACTCGTGGAATTGCCAACTTCTTCCGCCTTGTGGCCGGT
GGCATTAAAGGTCGGAGGGAAGACAGGATGGGGAGAACGAGGAGAAGGGG
AGGGAGGGGAGCGTGTGGAATTTTGGGAAGTTGATGGTAATGAAGAAGTG
AAGAATGGGAGACGATGCTGGATATTGGAATTGGCTGCATCACCAACAGA
AGAGGACGAGGAAGAAGCGCAGGGGGATGACGAAGAGGACCTTGAACAGG
AGCCTGCGTTTTGGTGGCGGGTGGCTCGTCGCCACTCGACCAGTAGGATG
AGCAGCAGCAGCAATGGCAGCACCAACGACAACAGCAGCATGCCATTACA
CTAG
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protein sequence of NO06G01560.1

>NO06G01560.1-protein ID=NO06G01560.1-protein|Name=NO06G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=918bp
MKKRPRAMLLNQHRSVPFLTPPAPLSAITSFQASPSPASAAAAVLVDGPT
PGPWGWTSVASQDGQVRVYDTSSFFDAEPQMEKPLMLAHLLQPGESGPGQ
LIAHTWGSSSSSRQHDVSQEAGRKEKCHFLAILHRSGCVVHRFLSTPTSA
PVPCAFLRPCADARCIDMLLSFPSSISSALTVALGGSFGLELHQVPEEGV
ALPTRHLPGASVSLLRFSPDGRYLAVACLDGRVGVLKVAHLLEEQQQQQE
ERQLQNEWACAVIKGERATCLAFSSSSDRLAVVCADGNTIMLRPPSLSSS
SSSSFHSLWRCSPAFQSFLRAPLLISPPAGTSSSLCNACTTSLLTTSSSS
SNDNWISGSPLPCRPYLSWSPDDNFLMITFPGVSNNKSSSSNSSSNDGGN
PPRLVVLEADSGATRQVLLLPRPWQGMCGGGGGGGGGRVLGVDDLGALHV
LQWKGGRAGRTRGVRQALLACTTTGDVYGLNREDQEMGEKGEEGVLEESL
TLIWTKRRGDEKRKNEEQERKEMKATSTMTLRAPFFSTHACALWQKRGHE
VVCFEGGRGRGLGSRWCRQPQSKCKIVIGEKWLGVSFPEVLFLHPWRDDA
EKGEEKKEEEAEWQMWQGWWGSGQNLQSAAFVEGKAEGELKVLALFLSEN
DQHDHHHHQQQQQRISLWLELLLACGDDSSTPSSSSPAASLSVPLVLPQE
EAQFKPFSWRWCILTSETKSKDNSSGSSSSSSSNDIKFVVLGWQLGTAAA
TVAANAPHFLHVWRGQIQRPTPPTTTATVAATTLSSAEAAAATSMIQLSS
EAPLLVELPTSSALWPVALKVGGKTGWGERGEGEGGERVEFWEVDGNEEV
KNGRRCWILELAASPTEEDEEEAQGDDEEDLEQEPAFWWRVARRHSTSRM
SSSSNGSTNDNSSMPLH*
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Synonyms
Publications