NO06G01560.1, NO06G01560.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G01560.1
Unique Name	NO06G01560.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2754
Alignment location	chr6:489516..492269 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:489516..492269 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO06G01560.1 vs.

BLAST of NO06G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G01560	NO06G01560	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G01560.1	NO06G01560.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G01560.1.cds1	NO06G01560.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:489516..492269-
coding sequence from alignment at chr6:489516..492269-

mRNA sequence

>NO06G01560.1 ID=NO06G01560.1|Name=NO06G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2754bp
ATGAAGAAGCGCCCTAGAGCGATGCTTCTAAACCAGCACCGCTCCGTCCC
TTTCCTGACCCCGCCGGCTCCTCTCTCTGCAATAACTTCCTTCCAAGCCT
CGCCCTCTCCTGCCAGTGCGGCGGCCGCCGTCCTGGTCGATGGCCCTACT
CCAGGCCCTTGGGGATGGACCAGCGTGGCTTCACAGGACGGGCAGGTTCG
TGTGTACGACACTTCATCTTTTTTTGACGCTGAGCCTCAGATGGAAAAGC
CTCTGATGCTCGCACACCTGCTCCAGCCGGGTGAAAGCGGCCCGGGGCAA
CTGATTGCCCATACCTGGGGCAGCAGCAGCAGCAGCAGACAACATGATGT
GTCACAAGAAGCAGGTCGCAAGGAGAAGTGTCACTTTTTGGCCATTTTGC
ACCGAAGTGGGTGCGTCGTCCACCGCTTCCTCTCCACCCCCACCTCCGCC
CCAGTGCCTTGCGCCTTTCTCCGCCCCTGCGCCGACGCCCGCTGCATAGA
CATGCTCCTCTCTTTTCCCTCCTCAATTTCTTCAGCACTCACTGTGGCAT
TGGGCGGTAGTTTTGGATTGGAATTGCACCAAGTACCAGAGGAGGGGGTC
GCTCTCCCAACTCGTCACTTGCCCGGAGCCTCAGTATCTCTCCTTCGTTT
CTCCCCCGATGGCCGGTATTTGGCTGTGGCTTGTTTAGACGGACGGGTTG
GCGTATTAAAAGTAGCACACTTGCTGGAAGAGCAGCAGCAGCAGCAGGAA
GAGCGACAACTCCAAAACGAATGGGCATGTGCGGTCATCAAGGGAGAGCG
TGCGACGTGCCTGGCTTTCTCCTCCTCAAGCGACAGACTGGCAGTGGTAT
GCGCAGACGGGAACACCATTATGCTTCGCCCGCCTTCGTTGTCTTCCTCC
TCTTCATCCAGCTTCCATTCCTTATGGCGATGCTCCCCCGCTTTTCAATC
CTTCCTCCGTGCGCCTCTCCTCATCTCACCCCCTGCCGGCACAAGCTCCT
CCCTCTGTAATGCATGCACTACTTCCCTTCTCACGACCAGCAGCAGCAGC
AGCAACGATAACTGGATCAGTGGTTCACCCCTTCCCTGCCGACCCTACCT
CTCCTGGAGTCCCGACGACAATTTTTTGATGATCACTTTTCCTGGCGTGA
GCAACAACAAAAGCAGCAGCAGCAATAGTAGTAGTAATGATGGAGGGAAT
CCGCCGCGGTTGGTGGTGCTAGAGGCAGACAGTGGAGCGACGCGGCAAGT
ATTGTTATTGCCGCGTCCGTGGCAAGGAATGTGTGGAGGAGGAGGAGGAG
GTGGTGGAGGGAGGGTGCTAGGAGTAGATGACCTGGGGGCGCTGCATGTG
TTGCAGTGGAAAGGAGGAAGGGCGGGAAGGACAAGGGGAGTAAGGCAGGC
GTTATTGGCTTGCACGACGACGGGGGATGTGTATGGCTTGAATAGGGAGG
ACCAGGAAATGGGCGAGAAAGGAGAGGAAGGAGTGTTGGAGGAGAGTCTG
ACGTTAATTTGGACAAAAAGAAGAGGGGATGAGAAGAGGAAGAATGAGGA
GCAGGAAAGGAAAGAGATGAAAGCAACATCAACGATGACGCTTCGCGCTC
CTTTTTTCTCCACCCACGCCTGTGCGCTTTGGCAGAAACGAGGCCATGAG
GTGGTGTGCTTTGAAGGGGGAAGGGGAAGAGGATTGGGCTCACGTTGGTG
TCGACAGCCGCAGAGCAAGTGTAAAATCGTGATAGGTGAGAAATGGTTGG
GTGTGAGCTTTCCTGAGGTGCTTTTCCTTCATCCATGGAGGGACGATGCG
GAAAAGGGGGAGGAAAAGAAGGAGGAAGAGGCGGAATGGCAGATGTGGCA
AGGTTGGTGGGGGAGTGGGCAGAATTTGCAGAGTGCCGCGTTTGTGGAGG
GGAAAGCGGAGGGGGAGTTGAAGGTGCTTGCTTTGTTTCTATCTGAGAAT
GACCAGCATGACCACCACCACCACCAGCAGCAGCAGCAACGAATATCACT
GTGGTTGGAATTGCTGTTGGCTTGCGGTGATGACTCTTCCACTCCCTCGT
CCTCTTCCCCCGCCGCTTCTTTGTCTGTCCCACTTGTTCTGCCTCAAGAG
GAGGCGCAGTTCAAGCCTTTCTCCTGGCGTTGGTGTATTCTGACAAGCGA
GACCAAAAGTAAAGACAATAGTAGCGGCAGCAGCAGTAGCAGTAGCAGTA
ACGACATAAAGTTTGTGGTGTTAGGGTGGCAGTTAGGAACAGCAGCTGCG
ACCGTCGCAGCCAACGCCCCCCACTTTCTTCATGTGTGGAGGGGCCAGAT
CCAAAGACCAACACCACCAACTACCACTGCAACTGTTGCTGCTACCACTC
TATCTAGTGCGGAAGCTGCTGCTGCTACCTCCATGATACAGCTTTCGAGC
GAAGCTCCTCTACTCGTGGAATTGCCAACTTCTTCCGCCTTGTGGCCGGT
GGCATTAAAGGTCGGAGGGAAGACAGGATGGGGAGAACGAGGAGAAGGGG
AGGGAGGGGAGCGTGTGGAATTTTGGGAAGTTGATGGTAATGAAGAAGTG
AAGAATGGGAGACGATGCTGGATATTGGAATTGGCTGCATCACCAACAGA
AGAGGACGAGGAAGAAGCGCAGGGGGATGACGAAGAGGACCTTGAACAGG
AGCCTGCGTTTTGGTGGCGGGTGGCTCGTCGCCACTCGACCAGTAGGATG
AGCAGCAGCAGCAATGGCAGCACCAACGACAACAGCAGCATGCCATTACA
CTAG

protein sequence of NO06G01560.1

>NO06G01560.1-protein ID=NO06G01560.1-protein|Name=NO06G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=918bp
MKKRPRAMLLNQHRSVPFLTPPAPLSAITSFQASPSPASAAAAVLVDGPT
PGPWGWTSVASQDGQVRVYDTSSFFDAEPQMEKPLMLAHLLQPGESGPGQ
LIAHTWGSSSSSRQHDVSQEAGRKEKCHFLAILHRSGCVVHRFLSTPTSA
PVPCAFLRPCADARCIDMLLSFPSSISSALTVALGGSFGLELHQVPEEGV
ALPTRHLPGASVSLLRFSPDGRYLAVACLDGRVGVLKVAHLLEEQQQQQE
ERQLQNEWACAVIKGERATCLAFSSSSDRLAVVCADGNTIMLRPPSLSSS
SSSSFHSLWRCSPAFQSFLRAPLLISPPAGTSSSLCNACTTSLLTTSSSS
SNDNWISGSPLPCRPYLSWSPDDNFLMITFPGVSNNKSSSSNSSSNDGGN
PPRLVVLEADSGATRQVLLLPRPWQGMCGGGGGGGGGRVLGVDDLGALHV
LQWKGGRAGRTRGVRQALLACTTTGDVYGLNREDQEMGEKGEEGVLEESL
TLIWTKRRGDEKRKNEEQERKEMKATSTMTLRAPFFSTHACALWQKRGHE
VVCFEGGRGRGLGSRWCRQPQSKCKIVIGEKWLGVSFPEVLFLHPWRDDA
EKGEEKKEEEAEWQMWQGWWGSGQNLQSAAFVEGKAEGELKVLALFLSEN
DQHDHHHHQQQQQRISLWLELLLACGDDSSTPSSSSPAASLSVPLVLPQE
EAQFKPFSWRWCILTSETKSKDNSSGSSSSSSSNDIKFVVLGWQLGTAAA
TVAANAPHFLHVWRGQIQRPTPPTTTATVAATTLSSAEAAAATSMIQLSS
EAPLLVELPTSSALWPVALKVGGKTGWGERGEGEGGERVEFWEVDGNEEV
KNGRRCWILELAASPTEEDEEEAQGDDEEDLEQEPAFWWRVARRHSTSRM
SSSSNGSTNDNSSMPLH*

mRNA from alignment at chr6:489516..492269-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G01560.1 ID=NO06G01560.1|Name=NO06G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2754bp|location=Sequence derived from alignment at chr6:489516..492269- (Nannochloropsis oceanica)
ATGAAGAAGCGCCCTAGAGCGATGCTTCTAAACCAGCACCGCTCCGTCCC
TTTCCTGACCCCGCCGGCTCCTCTCTCTGCAATAACTTCCTTCCAAGCCT
CGCCCTCTCCTGCCAGTGCGGCGGCCGCCGTCCTGGTCGATGGCCCTACT
CCAGGCCCTTGGGGATGGACCAGCGTGGCTTCACAGGACGGGCAGGTTCG
TGTGTACGACACTTCATCTTTTTTTGACGCTGAGCCTCAGATGGAAAAGC
CTCTGATGCTCGCACACCTGCTCCAGCCGGGTGAAAGCGGCCCGGGGCAA
CTGATTGCCCATACCTGGGGCAGCAGCAGCAGCAGCAGACAACATGATGT
GTCACAAGAAGCAGGTCGCAAGGAGAAGTGTCACTTTTTGGCCATTTTGC
ACCGAAGTGGGTGCGTCGTCCACCGCTTCCTCTCCACCCCCACCTCCGCC
CCAGTGCCTTGCGCCTTTCTCCGCCCCTGCGCCGACGCCCGCTGCATAGA
CATGCTCCTCTCTTTTCCCTCCTCAATTTCTTCAGCACTCACTGTGGCAT
TGGGCGGTAGTTTTGGATTGGAATTGCACCAAGTACCAGAGGAGGGGGTC
GCTCTCCCAACTCGTCACTTGCCCGGAGCCTCAGTATCTCTCCTTCGTTT
CTCCCCCGATGGCCGGTATTTGGCTGTGGCTTGTTTAGACGGACGGGTTG
GCGTATTAAAAGTAGCACACTTGCTGGAAGAGCAGCAGCAGCAGCAGGAA
GAGCGACAACTCCAAAACGAATGGGCATGTGCGGTCATCAAGGGAGAGCG
TGCGACGTGCCTGGCTTTCTCCTCCTCAAGCGACAGACTGGCAGTGGTAT
GCGCAGACGGGAACACCATTATGCTTCGCCCGCCTTCGTTGTCTTCCTCC
TCTTCATCCAGCTTCCATTCCTTATGGCGATGCTCCCCCGCTTTTCAATC
CTTCCTCCGTGCGCCTCTCCTCATCTCACCCCCTGCCGGCACAAGCTCCT
CCCTCTGTAATGCATGCACTACTTCCCTTCTCACGACCAGCAGCAGCAGC
AGCAACGATAACTGGATCAGTGGTTCACCCCTTCCCTGCCGACCCTACCT
CTCCTGGAGTCCCGACGACAATTTTTTGATGATCACTTTTCCTGGCGTGA
GCAACAACAAAAGCAGCAGCAGCAATAGTAGTAGTAATGATGGAGGGAAT
CCGCCGCGGTTGGTGGTGCTAGAGGCAGACAGTGGAGCGACGCGGCAAGT
ATTGTTATTGCCGCGTCCGTGGCAAGGAATGTGTGGAGGAGGAGGAGGAG
GTGGTGGAGGGAGGGTGCTAGGAGTAGATGACCTGGGGGCGCTGCATGTG
TTGCAGTGGAAAGGAGGAAGGGCGGGAAGGACAAGGGGAGTAAGGCAGGC
GTTATTGGCTTGCACGACGACGGGGGATGTGTATGGCTTGAATAGGGAGG
ACCAGGAAATGGGCGAGAAAGGAGAGGAAGGAGTGTTGGAGGAGAGTCTG
ACGTTAATTTGGACAAAAAGAAGAGGGGATGAGAAGAGGAAGAATGAGGA
GCAGGAAAGGAAAGAGATGAAAGCAACATCAACGATGACGCTTCGCGCTC
CTTTTTTCTCCACCCACGCCTGTGCGCTTTGGCAGAAACGAGGCCATGAG
GTGGTGTGCTTTGAAGGGGGAAGGGGAAGAGGATTGGGCTCACGTTGGTG
TCGACAGCCGCAGAGCAAGTGTAAAATCGTGATAGGTGAGAAATGGTTGG
GTGTGAGCTTTCCTGAGGTGCTTTTCCTTCATCCATGGAGGGACGATGCG
GAAAAGGGGGAGGAAAAGAAGGAGGAAGAGGCGGAATGGCAGATGTGGCA
AGGTTGGTGGGGGAGTGGGCAGAATTTGCAGAGTGCCGCGTTTGTGGAGG
GGAAAGCGGAGGGGGAGTTGAAGGTGCTTGCTTTGTTTCTATCTGAGAAT
GACCAGCATGACCACCACCACCACCAGCAGCAGCAGCAACGAATATCACT
GTGGTTGGAATTGCTGTTGGCTTGCGGTGATGACTCTTCCACTCCCTCGT
CCTCTTCCCCCGCCGCTTCTTTGTCTGTCCCACTTGTTCTGCCTCAAGAG
GAGGCGCAGTTCAAGCCTTTCTCCTGGCGTTGGTGTATTCTGACAAGCGA
GACCAAAAGTAAAGACAATAGTAGCGGCAGCAGCAGTAGCAGTAGCAGTA
ACGACATAAAGTTTGTGGTGTTAGGGTGGCAGTTAGGAACAGCAGCTGCG
ACCGTCGCAGCCAACGCCCCCCACTTTCTTCATGTGTGGAGGGGCCAGAT
CCAAAGACCAACACCACCAACTACCACTGCAACTGTTGCTGCTACCACTC
TATCTAGTGCGGAAGCTGCTGCTGCTACCTCCATGATACAGCTTTCGAGC
GAAGCTCCTCTACTCGTGGAATTGCCAACTTCTTCCGCCTTGTGGCCGGT
GGCATTAAAGGTCGGAGGGAAGACAGGATGGGGAGAACGAGGAGAAGGGG
AGGGAGGGGAGCGTGTGGAATTTTGGGAAGTTGATGGTAATGAAGAAGTG
AAGAATGGGAGACGATGCTGGATATTGGAATTGGCTGCATCACCAACAGA
AGAGGACGAGGAAGAAGCGCAGGGGGATGACGAAGAGGACCTTGAACAGG
AGCCTGCGTTTTGGTGGCGGGTGGCTCGTCGCCACTCGACCAGTAGGATG
AGCAGCAGCAGCAATGGCAGCACCAACGACAACAGCAGCATGCCATTACA
CTAG

Coding sequence (CDS) from alignment at chr6:489516..492269-

>NO06G01560.1 ID=NO06G01560.1|Name=NO06G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=2754bp|location=Sequence derived from alignment at chr6:489516..492269- (Nannochloropsis oceanica)
ATGAAGAAGCGCCCTAGAGCGATGCTTCTAAACCAGCACCGCTCCGTCCC
TTTCCTGACCCCGCCGGCTCCTCTCTCTGCAATAACTTCCTTCCAAGCCT
CGCCCTCTCCTGCCAGTGCGGCGGCCGCCGTCCTGGTCGATGGCCCTACT
CCAGGCCCTTGGGGATGGACCAGCGTGGCTTCACAGGACGGGCAGGTTCG
TGTGTACGACACTTCATCTTTTTTTGACGCTGAGCCTCAGATGGAAAAGC
CTCTGATGCTCGCACACCTGCTCCAGCCGGGTGAAAGCGGCCCGGGGCAA
CTGATTGCCCATACCTGGGGCAGCAGCAGCAGCAGCAGACAACATGATGT
GTCACAAGAAGCAGGTCGCAAGGAGAAGTGTCACTTTTTGGCCATTTTGC
ACCGAAGTGGGTGCGTCGTCCACCGCTTCCTCTCCACCCCCACCTCCGCC
CCAGTGCCTTGCGCCTTTCTCCGCCCCTGCGCCGACGCCCGCTGCATAGA
CATGCTCCTCTCTTTTCCCTCCTCAATTTCTTCAGCACTCACTGTGGCAT
TGGGCGGTAGTTTTGGATTGGAATTGCACCAAGTACCAGAGGAGGGGGTC
GCTCTCCCAACTCGTCACTTGCCCGGAGCCTCAGTATCTCTCCTTCGTTT
CTCCCCCGATGGCCGGTATTTGGCTGTGGCTTGTTTAGACGGACGGGTTG
GCGTATTAAAAGTAGCACACTTGCTGGAAGAGCAGCAGCAGCAGCAGGAA
GAGCGACAACTCCAAAACGAATGGGCATGTGCGGTCATCAAGGGAGAGCG
TGCGACGTGCCTGGCTTTCTCCTCCTCAAGCGACAGACTGGCAGTGGTAT
GCGCAGACGGGAACACCATTATGCTTCGCCCGCCTTCGTTGTCTTCCTCC
TCTTCATCCAGCTTCCATTCCTTATGGCGATGCTCCCCCGCTTTTCAATC
CTTCCTCCGTGCGCCTCTCCTCATCTCACCCCCTGCCGGCACAAGCTCCT
CCCTCTGTAATGCATGCACTACTTCCCTTCTCACGACCAGCAGCAGCAGC
AGCAACGATAACTGGATCAGTGGTTCACCCCTTCCCTGCCGACCCTACCT
CTCCTGGAGTCCCGACGACAATTTTTTGATGATCACTTTTCCTGGCGTGA
GCAACAACAAAAGCAGCAGCAGCAATAGTAGTAGTAATGATGGAGGGAAT
CCGCCGCGGTTGGTGGTGCTAGAGGCAGACAGTGGAGCGACGCGGCAAGT
ATTGTTATTGCCGCGTCCGTGGCAAGGAATGTGTGGAGGAGGAGGAGGAG
GTGGTGGAGGGAGGGTGCTAGGAGTAGATGACCTGGGGGCGCTGCATGTG
TTGCAGTGGAAAGGAGGAAGGGCGGGAAGGACAAGGGGAGTAAGGCAGGC
GTTATTGGCTTGCACGACGACGGGGGATGTGTATGGCTTGAATAGGGAGG
ACCAGGAAATGGGCGAGAAAGGAGAGGAAGGAGTGTTGGAGGAGAGTCTG
ACGTTAATTTGGACAAAAAGAAGAGGGGATGAGAAGAGGAAGAATGAGGA
GCAGGAAAGGAAAGAGATGAAAGCAACATCAACGATGACGCTTCGCGCTC
CTTTTTTCTCCACCCACGCCTGTGCGCTTTGGCAGAAACGAGGCCATGAG
GTGGTGTGCTTTGAAGGGGGAAGGGGAAGAGGATTGGGCTCACGTTGGTG
TCGACAGCCGCAGAGCAAGTGTAAAATCGTGATAGGTGAGAAATGGTTGG
GTGTGAGCTTTCCTGAGGTGCTTTTCCTTCATCCATGGAGGGACGATGCG
GAAAAGGGGGAGGAAAAGAAGGAGGAAGAGGCGGAATGGCAGATGTGGCA
AGGTTGGTGGGGGAGTGGGCAGAATTTGCAGAGTGCCGCGTTTGTGGAGG
GGAAAGCGGAGGGGGAGTTGAAGGTGCTTGCTTTGTTTCTATCTGAGAAT
GACCAGCATGACCACCACCACCACCAGCAGCAGCAGCAACGAATATCACT
GTGGTTGGAATTGCTGTTGGCTTGCGGTGATGACTCTTCCACTCCCTCGT
CCTCTTCCCCCGCCGCTTCTTTGTCTGTCCCACTTGTTCTGCCTCAAGAG
GAGGCGCAGTTCAAGCCTTTCTCCTGGCGTTGGTGTATTCTGACAAGCGA
GACCAAAAGTAAAGACAATAGTAGCGGCAGCAGCAGTAGCAGTAGCAGTA
ACGACATAAAGTTTGTGGTGTTAGGGTGGCAGTTAGGAACAGCAGCTGCG
ACCGTCGCAGCCAACGCCCCCCACTTTCTTCATGTGTGGAGGGGCCAGAT
CCAAAGACCAACACCACCAACTACCACTGCAACTGTTGCTGCTACCACTC
TATCTAGTGCGGAAGCTGCTGCTGCTACCTCCATGATACAGCTTTCGAGC
GAAGCTCCTCTACTCGTGGAATTGCCAACTTCTTCCGCCTTGTGGCCGGT
GGCATTAAAGGTCGGAGGGAAGACAGGATGGGGAGAACGAGGAGAAGGGG
AGGGAGGGGAGCGTGTGGAATTTTGGGAAGTTGATGGTAATGAAGAAGTG
AAGAATGGGAGACGATGCTGGATATTGGAATTGGCTGCATCACCAACAGA
AGAGGACGAGGAAGAAGCGCAGGGGGATGACGAAGAGGACCTTGAACAGG
AGCCTGCGTTTTGGTGGCGGGTGGCTCGTCGCCACTCGACCAGTAGGATG
AGCAGCAGCAGCAATGGCAGCACCAACGACAACAGCAGCATGCCATTACA
CTAG

Synonyms

Publications