NO06G00790, NO06G00790 (gene) Nannochloropsis oceanica

Overview
NameNO06G00790
Unique NameNO06G00790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length828
Alignment locationchr6:276345..277172 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:276345..277172 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G00790 vs. NCBI_GenBank
Match: EWM26106.1 (hypothetical protein Naga_100014g45 [Nannochloropsis gaditana])

HSP 1 Score: 116.3 bits (290), Expect = 1.500e-22
Identity = 105/257 (40.86%), Postives = 126/257 (49.03%), Query Frame = 0 
Query:   18 PGSPTSPSQKRYIFHEDRDMHEIKRRMGGLRFGEESAVGSPAAKSMPATATPPPILGSTTSGVTPAVDAAAFPSPFSDSNSTIFRPHATPGGVGITLHIPPTVRIPDSAATSNSTSWSAVSAIPSTVSTNEVKAVAIDSDDNGGPGEEEGRNCPQSGSISRTSS----------TSSTDSVSRID-DDIHAVMPCLLYKRPPPRDKVEARIENLIRYSLLGANPEVTRPPTEQPLYLCDKPWPVVEETRNNDQRMDG 264
            P S  SPS+KR I HEDRD+ EIKRRMGGLRFGEE                  P LGS+   + P +D     +P   S  ++F     PG       +PP V  P+ A  S     +A    P T S +E  A  +DS+++ G  E  G    +S + SR S              T  VSRID DD  A M  +LYKR PPRDKVE +IENLIR S+L A P     P   PL  CD PWPV E      QRMDG
Sbjct:   12 PYSFPSPSRKRQIPHEDRDILEIKRRMGGLRFGEEL-----------------PDLGSS---LQPPIDVNL--TPLHGSPDSVFGSSGGPG-------VPPPVPGPNCAGKS-----TAPHGFPQTPSIDE-GATEMDSEESEGDDEVAGVLNGRSDTRSRFSGHEKDLAKDAFRRGTQDVSRIDEDDPRATMLNILYKRRPPRDKVEEKIENLIRRSMLRATP---GGPAAPPLSQCDAPWPVTE-----SQRMDG 225
The following BLAST results are available for this feature:
BLAST of NO06G00790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26106.11.500e-2240.86hypothetical protein Naga_100014g45 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000372NSK000372Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00790.1NO06G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g45gene4406Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00790.1NO06G00790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00790 ID=NO06G00790|Name=NO06G00790|organism=Nannochloropsis oceanica|type=gene|length=828bp
ATGTTTCCTTCACAGGACACGAATCAGCAGCCACCGTTCTTCCCCTCCGC
TCCCGGTTCTCCCACCTCGCCTTCCCAGAAACGTTACATTTTTCACGAAG
ACCGGGACATGCACGAGATTAAGCGTCGGATGGGGGGGCTGCGATTCGGG
GAGGAATCGGCCGTGGGCTCACCAGCAGCCAAGAGTATGCCAGCTACAGC
AACGCCACCGCCCATACTTGGATCCACCACCAGTGGCGTTACCCCCGCGG
TGGATGCGGCAGCTTTCCCAAGCCCGTTCTCAGATTCTAATAGCACCATT
TTCCGTCCTCATGCCACTCCGGGCGGCGTAGGCATAACTTTACACATTCC
TCCGACCGTACGCATTCCCGACAGTGCCGCCACTAGCAATAGCACTTCCT
GGAGCGCGGTGTCGGCGATTCCATCAACTGTTTCCACCAACGAAGTGAAA
GCTGTGGCCATAGATAGTGATGATAATGGGGGTCCGGGAGAGGAAGAGGG
AAGGAATTGCCCGCAGAGTGGCAGCATCAGTCGAACCAGCAGCACCAGCA
GCACCGACAGCGTTTCACGTATTGACGACGACATCCATGCTGTCATGCCG
TGTTTGCTTTACAAGCGCCCCCCCCCCCGCGATAAGGTGGAGGCCAGGAT
TGAAAACCTTATCCGTTACTCCTTGCTGGGCGCAAATCCCGAAGTCACCC
GGCCTCCAACGGAGCAACCGCTATATCTGTGTGACAAACCCTGGCCAGTC
GTGGAGGAAACACGAAACAACGATCAGAGGATGGACGGCCTGCCAGTCCT
CAGGGATGAGGGAGATATGGAATTTTGA
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protein sequence of NO06G00790.1

>NO06G00790.1-protein ID=NO06G00790.1-protein|Name=NO06G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MFPSQDTNQQPPFFPSAPGSPTSPSQKRYIFHEDRDMHEIKRRMGGLRFG
EESAVGSPAAKSMPATATPPPILGSTTSGVTPAVDAAAFPSPFSDSNSTI
FRPHATPGGVGITLHIPPTVRIPDSAATSNSTSWSAVSAIPSTVSTNEVK
AVAIDSDDNGGPGEEEGRNCPQSGSISRTSSTSSTDSVSRIDDDIHAVMP
CLLYKRPPPRDKVEARIENLIRYSLLGANPEVTRPPTEQPLYLCDKPWPV
VEETRNNDQRMDGLPVLRDEGDMEF*
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Synonyms
Publications