NO06G00790.1, NO06G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00790.1
Unique NameNO06G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length828
Alignment locationchr6:276345..277172 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:276345..277172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00790.1 vs.
Match: EWM26106.1 (hypothetical protein Naga_100014g45 [Nannochloropsis gaditana])

HSP 1 Score: 116.3 bits (290), Expect = 1.500e-22
Identity = 105/257 (40.86%), Postives = 126/257 (49.03%), Query Frame = 0 
Query:   18 PGSPTSPSQKRYIFHEDRDMHEIKRRMGGLRFGEESAVGSPAAKSMPATATPPPILGSTTSGVTPAVDAAAFPSPFSDSNSTIFRPHATPGGVGITLHIPPTVRIPDSAATSNSTSWSAVSAIPSTVSTNEVKAVAIDSDDNGGPGEEEGRNCPQSGSISRTSSTSS----------TDSVSRID-DDIHAVMPCLLYKRPPPRDKVEARIENLIRYSLLGANPEVTRPPTEQPLYLCDKPWPVVEETRNNDQRMDG 264
            P S  SPS+KR I HEDRD+ EIKRRMGGLRFGEE                  P LGS+   + P +D     +P   S  ++F     PG       +PP V  P+ A  S     +A    P T S +E  A  +DS+++ G  E  G    +S + SR S              T  VSRID DD  A M  +LYKR PPRDKVE +IENLIR S+L A P     P   PL  CD PWPV E      QRMDG
Sbjct:   12 PYSFPSPSRKRQIPHEDRDILEIKRRMGGLRFGEEL-----------------PDLGSS---LQPPIDVNL--TPLHGSPDSVFGSSGGPG-------VPPPVPGPNCAGKS-----TAPHGFPQTPSIDE-GATEMDSEESEGDDEVAGVLNGRSDTRSRFSGHEKDLAKDAFRRGTQDVSRIDEDDPRATMLNILYKRRPPRDKVEEKIENLIRRSMLRATP---GGPAAPPLSQCDAPWPVTE-----SQRMDG 225
The following BLAST results are available for this feature:
BLAST of NO06G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26106.11.500e-2240.86hypothetical protein Naga_100014g45 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00790NO06G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00790.1NO06G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00790.1.cds1NO06G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00790.1 ID=NO06G00790.1|Name=NO06G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
ATGTTTCCTTCACAGGACACGAATCAGCAGCCACCGTTCTTCCCCTCCGC
TCCCGGTTCTCCCACCTCGCCTTCCCAGAAACGTTACATTTTTCACGAAG
ACCGGGACATGCACGAGATTAAGCGTCGGATGGGGGGGCTGCGATTCGGG
GAGGAATCGGCCGTGGGCTCACCAGCAGCCAAGAGTATGCCAGCTACAGC
AACGCCACCGCCCATACTTGGATCCACCACCAGTGGCGTTACCCCCGCGG
TGGATGCGGCAGCTTTCCCAAGCCCGTTCTCAGATTCTAATAGCACCATT
TTCCGTCCTCATGCCACTCCGGGCGGCGTAGGCATAACTTTACACATTCC
TCCGACCGTACGCATTCCCGACAGTGCCGCCACTAGCAATAGCACTTCCT
GGAGCGCGGTGTCGGCGATTCCATCAACTGTTTCCACCAACGAAGTGAAA
GCTGTGGCCATAGATAGTGATGATAATGGGGGTCCGGGAGAGGAAGAGGG
AAGGAATTGCCCGCAGAGTGGCAGCATCAGTCGAACCAGCAGCACCAGCA
GCACCGACAGCGTTTCACGTATTGACGACGACATCCATGCTGTCATGCCG
TGTTTGCTTTACAAGCGCCCCCCCCCCCGCGATAAGGTGGAGGCCAGGAT
TGAAAACCTTATCCGTTACTCCTTGCTGGGCGCAAATCCCGAAGTCACCC
GGCCTCCAACGGAGCAACCGCTATATCTGTGTGACAAACCCTGGCCAGTC
GTGGAGGAAACACGAAACAACGATCAGAGGATGGACGGCCTGCCAGTCCT
CAGGGATGAGGGAGATATGGAATTTTGA
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protein sequence of NO06G00790.1

>NO06G00790.1-protein ID=NO06G00790.1-protein|Name=NO06G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MFPSQDTNQQPPFFPSAPGSPTSPSQKRYIFHEDRDMHEIKRRMGGLRFG
EESAVGSPAAKSMPATATPPPILGSTTSGVTPAVDAAAFPSPFSDSNSTI
FRPHATPGGVGITLHIPPTVRIPDSAATSNSTSWSAVSAIPSTVSTNEVK
AVAIDSDDNGGPGEEEGRNCPQSGSISRTSSTSSTDSVSRIDDDIHAVMP
CLLYKRPPPRDKVEARIENLIRYSLLGANPEVTRPPTEQPLYLCDKPWPV
VEETRNNDQRMDGLPVLRDEGDMEF*
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mRNA from alignment at chr6:276345..277172+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00790.1 ID=NO06G00790.1|Name=NO06G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=828bp|location=Sequence derived from alignment at chr6:276345..277172+ (Nannochloropsis oceanica)
ATGTTTCCTTCACAGGACACGAATCAGCAGCCACCGTTCTTCCCCTCCGC
TCCCGGTTCTCCCACCTCGCCTTCCCAGAAACGTTACATTTTTCACGAAG
ACCGGGACATGCACGAGATTAAGCGTCGGATGGGGGGGCTGCGATTCGGG
GAGGAATCGGCCGTGGGCTCACCAGCAGCCAAGAGTATGCCAGCTACAGC
AACGCCACCGCCCATACTTGGATCCACCACCAGTGGCGTTACCCCCGCGG
TGGATGCGGCAGCTTTCCCAAGCCCGTTCTCAGATTCTAATAGCACCATT
TTCCGTCCTCATGCCACTCCGGGCGGCGTAGGCATAACTTTACACATTCC
TCCGACCGTACGCATTCCCGACAGTGCCGCCACTAGCAATAGCACTTCCT
GGAGCGCGGTGTCGGCGATTCCATCAACTGTTTCCACCAACGAAGTGAAA
GCTGTGGCCATAGATAGTGATGATAATGGGGGTCCGGGAGAGGAAGAGGG
AAGGAATTGCCCGCAGAGTGGCAGCATCAGTCGAACCAGCAGCACCAGCA
GCACCGACAGCGTTTCACGTATTGACGACGACATCCATGCTGTCATGCCG
TGTTTGCTTTACAAGCGCCCCCCCCCCCGCGATAAGGTGGAGGCCAGGAT
TGAAAACCTTATCCGTTACTCCTTGCTGGGCGCAAATCCCGAAGTCACCC
GGCCTCCAACGGAGCAACCGCTATATCTGTGTGACAAACCCTGGCCAGTC
GTGGAGGAAACACGAAACAACGATCAGAGGATGGACGGCCTGCCAGTCCT
CAGGGATGAGGGAGATATGGAATTTTGA
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Coding sequence (CDS) from alignment at chr6:276345..277172+

>NO06G00790.1 ID=NO06G00790.1|Name=NO06G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr6:276345..277172+ (Nannochloropsis oceanica)
ATGTTTCCTTCACAGGACACGAATCAGCAGCCACCGTTCTTCCCCTCCGC
TCCCGGTTCTCCCACCTCGCCTTCCCAGAAACGTTACATTTTTCACGAAG
ACCGGGACATGCACGAGATTAAGCGTCGGATGGGGGGGCTGCGATTCGGG
GAGGAATCGGCCGTGGGCTCACCAGCAGCCAAGAGTATGCCAGCTACAGC
AACGCCACCGCCCATACTTGGATCCACCACCAGTGGCGTTACCCCCGCGG
TGGATGCGGCAGCTTTCCCAAGCCCGTTCTCAGATTCTAATAGCACCATT
TTCCGTCCTCATGCCACTCCGGGCGGCGTAGGCATAACTTTACACATTCC
TCCGACCGTACGCATTCCCGACAGTGCCGCCACTAGCAATAGCACTTCCT
GGAGCGCGGTGTCGGCGATTCCATCAACTGTTTCCACCAACGAAGTGAAA
GCTGTGGCCATAGATAGTGATGATAATGGGGGTCCGGGAGAGGAAGAGGG
AAGGAATTGCCCGCAGAGTGGCAGCATCAGTCGAACCAGCAGCACCAGCA
GCACCGACAGCGTTTCACGTATTGACGACGACATCCATGCTGTCATGCCG
TGTTTGCTTTACAAGCGCCCCCCCCCCCGCGATAAGGTGGAGGCCAGGAT
TGAAAACCTTATCCGTTACTCCTTGCTGGGCGCAAATCCCGAAGTCACCC
GGCCTCCAACGGAGCAACCGCTATATCTGTGTGACAAACCCTGGCCAGTC
GTGGAGGAAACACGAAACAACGATCAGAGGATGGACGGCCTGCCAGTCCT
CAGGGATGAGGGAGATATGGAATTTTGA
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Synonyms
Publications