NO06G00710, NO06G00710 (gene) Nannochloropsis oceanica

Overview
NameNO06G00710
Unique NameNO06G00710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1701
Alignment locationchr6:256897..258597 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:256897..258597 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G00710 vs. NCBI_GenBank
Match: EWM26123.1 (hypothetical protein Naga_100014g53 [Nannochloropsis gaditana])

HSP 1 Score: 437.6 bits (1124), Expect = 6.000e-119
Identity = 259/566 (45.76%), Postives = 362/566 (63.96%), Query Frame = 0 
Query:    7 PLEPYPAPPLQAMGQEGYEYPPRVVPSAENFEAMVGRLNLKRRWDGGRGGGGSLGAKTKSPTAVAEKDLASSLQSIEDAMRDLLIVADLVHVARDERSFIGQESLTESQLPGDDALPLPVSYIAPEIVLEMKKNSLAQAANDMATWVQQMQATINKSRRLVGTVAGLRHTTRLRAGGRNMALARPLSAGDPLSVLIDTKKGPLILPFRINSDGIPHVLGQ-GEKARQDLLGMMPAPTASSSLHVYVFGRQRGSYACSSSRQSLPTQKAENSAGLAHSLQELDDEAYMGRLFEFFRREVTNPAQAWVDRCGVCKGSDRASLDTRQAVKAIGEE----DGENKEVFG--RVHAIDMALQVAEATGQHIVVEIDNYHRLAIEFGAGKIARQPSLSSPQAASLQRLSELAYMRLIELGMLQGRKDSRQEEKGDEQIEEHWGDVLDHTILLRVAKELAHHQFIESLLSRXXXXXXXXXXXTVPTIVETLQWVEYPFTVPISQLVVIGRSQ--EAKSFLLDIQVRTTSLRVSWTSSNGDGKGDRTSTITEELAGLEDLEMYLERKLSLRQLP 564
            PLEPYPAPPLQA+ +EG+EYPP+ +P AE F++M+  L  K +W G  GGG  L    +     AEKDLAS+L+ +E+AMRDLLIVADL+HVAR+ERSFIGQ+SLT + L       +PVSYIAPE++ EMKK S++ AANDM +WV++M  T+ K RRL  T+A LR T+RL+AGG    L RPLSAGDP+SVL DTK+GP+ LP +I++ GIPHV G+ G +A Q+  G+ P+   +S L VY+    +G+ A  +S + + T + +   GLA SLQ L+DEAYMG++FE  R EV  PAQ WVDR  +    D           A+G+E    DG +K   G  R+  +    QV E +G+ +VVE++ +H L I FG+G   R P L   ++ SL R+ +LA++RLIEL   +G+     E + DE  E          IL R+  E++H  F++ L+             TVPT +E+ +WV +PF+ P S  V++GR +  EA++FL+DI+V  TS+RVS+T S   GK +RT + T+ L+GL DL++YLER L+LR+ P
Sbjct:    6 PLEPYPAPPLQAIDKEGFEYPPQPLPPAELFQSMLWYLRSKGQWTGFSGGGAKLPTAARRSLEPAEKDLASALECVEEAMRDLLIVADLMHVAREERSFIGQDSLTNAHL-SIGTPQVPVSYIAPEVIFEMKKRSMSHAANDMTSWVKRMHETLQKGRRLTKTMAALRRTSRLQAGGLKAILTRPLSAGDPVSVLFDTKQGPVALPLKIDASGIPHVSGRAGVEAEQEETGVAPSQPPTSCLRVYLTDGAQGTSAECASWRPIDTGRVDGPGGLALSLQALEDEAYMGQVFESVRLEVAAPAQPWVDR-NIFPERD-----------AVGDESSSIDGRHKTYDGLARLRPVGSPYQVVEVSGEEVVVEVNPFHHLGIGFGSGLDGR-PRLRPSRSDSLHRVCQLAFVRLIELTSRRGKPFEEHEVQEDEYPE---------GILARLTVEVSHLLFVDRLVMLLDELVRTVKDPTVPTTLESWRWVTFPFSAPESHFVILGRKEDCEAEAFLIDIRVTGTSVRVSYTFSRQGGKQNRTLS-TDALSGLGDLKVYLERHLALRRPP 547
The following BLAST results are available for this feature:
BLAST of NO06G00710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26123.16.000e-11945.76hypothetical protein Naga_100014g53 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000380NSK000380Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00710.1NO06G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g53gene4414Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00710.1NO06G00710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00710 ID=NO06G00710|Name=NO06G00710|organism=Nannochloropsis oceanica|type=gene|length=1701bp
ATGGCGTCCATCGGGGTCCCTCTGGAGCCCTACCCCGCACCGCCGCTCCA
GGCTATGGGACAAGAAGGGTACGAATACCCACCCCGAGTTGTGCCCTCAG
CCGAGAACTTTGAGGCGATGGTGGGGCGACTTAATCTGAAACGCCGATGG
GATGGAGGAAGGGGCGGGGGAGGATCGCTGGGGGCGAAGACCAAAAGCCC
TACAGCGGTAGCCGAGAAGGACCTCGCGTCATCCTTGCAAAGCATAGAGG
ACGCAATGCGTGACCTGCTAATCGTGGCAGACCTGGTGCACGTGGCTCGC
GATGAGCGCTCCTTTATCGGACAGGAGAGTCTGACTGAGAGTCAGTTGCC
GGGGGATGATGCCCTGCCCTTGCCCGTCTCATACATTGCGCCCGAGATCG
TGTTGGAGATGAAGAAGAATAGTCTGGCTCAGGCAGCGAACGACATGGCT
ACCTGGGTGCAGCAGATGCAGGCCACGATTAACAAGAGCCGGCGTCTGGT
AGGAACCGTGGCGGGGCTCCGCCATACCACGAGGTTGCGGGCTGGCGGAC
GCAACATGGCCTTGGCACGGCCACTGTCTGCTGGAGATCCTCTGTCGGTT
CTGATAGACACAAAGAAAGGCCCTCTTATTCTTCCTTTCAGGATCAACTC
AGACGGAATTCCGCATGTTCTTGGGCAAGGGGAGAAGGCCCGACAAGACC
TGTTGGGAATGATGCCGGCACCAACTGCTTCTAGTAGCTTACATGTCTAT
GTGTTTGGTAGACAGCGGGGCTCCTATGCATGTTCCTCGTCACGGCAGTC
TCTACCGACACAGAAAGCAGAAAATTCTGCTGGATTGGCTCATAGTCTTC
AGGAGCTGGACGATGAAGCCTATATGGGGCGGTTATTCGAATTCTTCCGA
CGAGAAGTCACCAATCCTGCCCAGGCGTGGGTAGACCGATGTGGTGTTTG
CAAGGGAAGCGACAGAGCAAGTCTGGACACTCGTCAGGCAGTCAAGGCCA
TCGGTGAGGAAGATGGAGAAAATAAAGAGGTGTTCGGAAGAGTGCACGCC
ATAGACATGGCTTTACAGGTAGCAGAGGCAACGGGGCAGCATATTGTAGT
TGAGATTGATAATTACCACAGACTGGCCATTGAATTTGGTGCCGGAAAAA
TAGCCAGACAACCATCGTTGTCCTCCCCACAAGCAGCCTCTTTACAGCGT
TTAAGTGAGCTAGCTTATATGCGCTTGATAGAGTTAGGGATGCTGCAAGG
AAGGAAGGACTCGAGGCAAGAAGAGAAGGGTGATGAACAGATCGAGGAGC
ACTGGGGCGACGTGTTAGATCATACAATCTTACTCCGTGTGGCGAAAGAA
TTAGCACACCATCAATTTATAGAAAGTCTTTTATCGCGGCTGTCACGAAT
TTTGAGAAAGGTGAGAAAGTCTACGGTACCAACCATTGTGGAAACTCTTC
AGTGGGTCGAGTACCCTTTTACGGTGCCCATTTCGCAGCTTGTGGTCATT
GGTAGAAGTCAGGAGGCAAAATCGTTCCTTCTTGATATTCAAGTCCGCAC
GACTTCTCTTCGTGTGTCGTGGACAAGCAGCAATGGAGATGGCAAAGGAG
ACCGCACGTCGACGATAACAGAGGAGCTGGCGGGTCTTGAAGACCTAGAG
ATGTATCTCGAAAGAAAACTCTCTTTACGACAGCTACCCGGGACGTTCTG
A
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protein sequence of NO06G00710.1

>NO06G00710.1-protein ID=NO06G00710.1-protein|Name=NO06G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MASIGVPLEPYPAPPLQAMGQEGYEYPPRVVPSAENFEAMVGRLNLKRRW
DGGRGGGGSLGAKTKSPTAVAEKDLASSLQSIEDAMRDLLIVADLVHVAR
DERSFIGQESLTESQLPGDDALPLPVSYIAPEIVLEMKKNSLAQAANDMA
TWVQQMQATINKSRRLVGTVAGLRHTTRLRAGGRNMALARPLSAGDPLSV
LIDTKKGPLILPFRINSDGIPHVLGQGEKARQDLLGMMPAPTASSSLHVY
VFGRQRGSYACSSSRQSLPTQKAENSAGLAHSLQELDDEAYMGRLFEFFR
REVTNPAQAWVDRCGVCKGSDRASLDTRQAVKAIGEEDGENKEVFGRVHA
IDMALQVAEATGQHIVVEIDNYHRLAIEFGAGKIARQPSLSSPQAASLQR
LSELAYMRLIELGMLQGRKDSRQEEKGDEQIEEHWGDVLDHTILLRVAKE
LAHHQFIESLLSRLSRILRKVRKSTVPTIVETLQWVEYPFTVPISQLVVI
GRSQEAKSFLLDIQVRTTSLRVSWTSSNGDGKGDRTSTITEELAGLEDLE
MYLERKLSLRQLPGTF*
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Synonyms
Publications