NO06G00710.1, NO06G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00710.1
Unique NameNO06G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1701
Alignment locationchr6:256897..258597 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:256897..258597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00710.1 vs.
Match: EWM26123.1 (hypothetical protein Naga_100014g53 [Nannochloropsis gaditana])

HSP 1 Score: 446.0 bits (1146), Expect = 1.700e-121
Identity = 262/566 (46.29%), Postives = 368/566 (65.02%), Query Frame = 0
Query:    7 PLEPYPAPPLQAMGQEGYEYPPRVVPSAENFEAMVGRLNLKRRWDGGRGGGGSLGAKTKSPTAVAEKDLASSLQSIEDAMRDLLIVADLVHVARDERSFIGQESLTESQLPGDDALPLPVSYIAPEIVLEMKKNSLAQAANDMATWVQQMQATINKSRRLVGTVAGLRHTTRLRAGGRNMALARPLSAGDPLSVLIDTKKGPLILPFRINSDGIPHVLGQ-GEKARQDLLGMMPAPTASSSLHVYVFGRQRGSYACSSSRQSLPTQKAENSAGLAHSLQELDDEAYMGRLFEFFRREVTNPAQAWVDRCGVCKGSDRASLDTRQAVKAIGEE----DGENKEVFG--RVHAIDMALQVAEATGQHIVVEIDNYHRLAIEFGAGKIARQPSLSSPQAASLQRLSELAYMRLIELGMLQGRKDSRQEEKGDEQIEEHWGDVLDHTILLRVAKELAHHQFIESLLSRLSRILRKVRKSTVPTIVETLQWVEYPFTVPISQLVVIGRSQ--EAKSFLLDIQVRTTSLRVSWTSSNGDGKGDRTSTITEELAGLEDLEMYLERKLSLRQLP 564
            PLEPYPAPPLQA+ +EG+EYPP+ +P AE F++M+  L  K +W G  GGG  L    +     AEKDLAS+L+ +E+AMRDLLIVADL+HVAR+ERSFIGQ+SLT + L       +PVSYIAPE++ EMKK S++ AANDM +WV++M  T+ K RRL  T+A LR T+RL+AGG    L RPLSAGDP+SVL DTK+GP+ LP +I++ GIPHV G+ G +A Q+  G+ P+   +S L VY+    +G+ A  +S + + T + +   GLA SLQ L+DEAYMG++FE  R EV  PAQ WVDR  +    D           A+G+E    DG +K   G  R+  +    QV E +G+ +VVE++ +H L I FG+G   R P L   ++ SL R+ +LA++RLIEL   +G+     E + DE  E          IL R+  E++H  F++ L+  L  ++R V+  TVPT +E+ +WV +PF+ P S  V++GR +  EA++FL+DI+V  TS+RVS+T S   GK +RT + T+ L+GL DL++YLER L+LR+ P
Sbjct:    6 PLEPYPAPPLQAIDKEGFEYPPQPLPPAELFQSMLWYLRSKGQWTGFSGGGAKLPTAARRSLEPAEKDLASALECVEEAMRDLLIVADLMHVAREERSFIGQDSLTNAHL-SIGTPQVPVSYIAPEVIFEMKKRSMSHAANDMTSWVKRMHETLQKGRRLTKTMAALRRTSRLQAGGLKAILTRPLSAGDPVSVLFDTKQGPVALPLKIDASGIPHVSGRAGVEAEQEETGVAPSQPPTSCLRVYLTDGAQGTSAECASWRPIDTGRVDGPGGLALSLQALEDEAYMGQVFESVRLEVAAPAQPWVDR-NIFPERD-----------AVGDESSSIDGRHKTYDGLARLRPVGSPYQVVEVSGEEVVVEVNPFHHLGIGFGSGLDGR-PRLRPSRSDSLHRVCQLAFVRLIELTSRRGKPFEEHEVQEDEYPE---------GILARLTVEVSHLLFVDRLVMLLDELVRTVKDPTVPTTLESWRWVTFPFSAPESHFVILGRKEDCEAEAFLIDIRVTGTSVRVSYTFSRQGGKQNRTLS-TDALSGLGDLKVYLERHLALRRPP 547          
The following BLAST results are available for this feature:
BLAST of NO06G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26123.11.700e-12146.29hypothetical protein Naga_100014g53 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00710NO06G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00710.1NO06G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00710.1.cds1NO06G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00710.1 ID=NO06G00710.1|Name=NO06G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp
ATGGCGTCCATCGGGGTCCCTCTGGAGCCCTACCCCGCACCGCCGCTCCA
GGCTATGGGACAAGAAGGGTACGAATACCCACCCCGAGTTGTGCCCTCAG
CCGAGAACTTTGAGGCGATGGTGGGGCGACTTAATCTGAAACGCCGATGG
GATGGAGGAAGGGGCGGGGGAGGATCGCTGGGGGCGAAGACCAAAAGCCC
TACAGCGGTAGCCGAGAAGGACCTCGCGTCATCCTTGCAAAGCATAGAGG
ACGCAATGCGTGACCTGCTAATCGTGGCAGACCTGGTGCACGTGGCTCGC
GATGAGCGCTCCTTTATCGGACAGGAGAGTCTGACTGAGAGTCAGTTGCC
GGGGGATGATGCCCTGCCCTTGCCCGTCTCATACATTGCGCCCGAGATCG
TGTTGGAGATGAAGAAGAATAGTCTGGCTCAGGCAGCGAACGACATGGCT
ACCTGGGTGCAGCAGATGCAGGCCACGATTAACAAGAGCCGGCGTCTGGT
AGGAACCGTGGCGGGGCTCCGCCATACCACGAGGTTGCGGGCTGGCGGAC
GCAACATGGCCTTGGCACGGCCACTGTCTGCTGGAGATCCTCTGTCGGTT
CTGATAGACACAAAGAAAGGCCCTCTTATTCTTCCTTTCAGGATCAACTC
AGACGGAATTCCGCATGTTCTTGGGCAAGGGGAGAAGGCCCGACAAGACC
TGTTGGGAATGATGCCGGCACCAACTGCTTCTAGTAGCTTACATGTCTAT
GTGTTTGGTAGACAGCGGGGCTCCTATGCATGTTCCTCGTCACGGCAGTC
TCTACCGACACAGAAAGCAGAAAATTCTGCTGGATTGGCTCATAGTCTTC
AGGAGCTGGACGATGAAGCCTATATGGGGCGGTTATTCGAATTCTTCCGA
CGAGAAGTCACCAATCCTGCCCAGGCGTGGGTAGACCGATGTGGTGTTTG
CAAGGGAAGCGACAGAGCAAGTCTGGACACTCGTCAGGCAGTCAAGGCCA
TCGGTGAGGAAGATGGAGAAAATAAAGAGGTGTTCGGAAGAGTGCACGCC
ATAGACATGGCTTTACAGGTAGCAGAGGCAACGGGGCAGCATATTGTAGT
TGAGATTGATAATTACCACAGACTGGCCATTGAATTTGGTGCCGGAAAAA
TAGCCAGACAACCATCGTTGTCCTCCCCACAAGCAGCCTCTTTACAGCGT
TTAAGTGAGCTAGCTTATATGCGCTTGATAGAGTTAGGGATGCTGCAAGG
AAGGAAGGACTCGAGGCAAGAAGAGAAGGGTGATGAACAGATCGAGGAGC
ACTGGGGCGACGTGTTAGATCATACAATCTTACTCCGTGTGGCGAAAGAA
TTAGCACACCATCAATTTATAGAAAGTCTTTTATCGCGGCTGTCACGAAT
TTTGAGAAAGGTGAGAAAGTCTACGGTACCAACCATTGTGGAAACTCTTC
AGTGGGTCGAGTACCCTTTTACGGTGCCCATTTCGCAGCTTGTGGTCATT
GGTAGAAGTCAGGAGGCAAAATCGTTCCTTCTTGATATTCAAGTCCGCAC
GACTTCTCTTCGTGTGTCGTGGACAAGCAGCAATGGAGATGGCAAAGGAG
ACCGCACGTCGACGATAACAGAGGAGCTGGCGGGTCTTGAAGACCTAGAG
ATGTATCTCGAAAGAAAACTCTCTTTACGACAGCTACCCGGGACGTTCTG
A
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protein sequence of NO06G00710.1

>NO06G00710.1-protein ID=NO06G00710.1-protein|Name=NO06G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MASIGVPLEPYPAPPLQAMGQEGYEYPPRVVPSAENFEAMVGRLNLKRRW
DGGRGGGGSLGAKTKSPTAVAEKDLASSLQSIEDAMRDLLIVADLVHVAR
DERSFIGQESLTESQLPGDDALPLPVSYIAPEIVLEMKKNSLAQAANDMA
TWVQQMQATINKSRRLVGTVAGLRHTTRLRAGGRNMALARPLSAGDPLSV
LIDTKKGPLILPFRINSDGIPHVLGQGEKARQDLLGMMPAPTASSSLHVY
VFGRQRGSYACSSSRQSLPTQKAENSAGLAHSLQELDDEAYMGRLFEFFR
REVTNPAQAWVDRCGVCKGSDRASLDTRQAVKAIGEEDGENKEVFGRVHA
IDMALQVAEATGQHIVVEIDNYHRLAIEFGAGKIARQPSLSSPQAASLQR
LSELAYMRLIELGMLQGRKDSRQEEKGDEQIEEHWGDVLDHTILLRVAKE
LAHHQFIESLLSRLSRILRKVRKSTVPTIVETLQWVEYPFTVPISQLVVI
GRSQEAKSFLLDIQVRTTSLRVSWTSSNGDGKGDRTSTITEELAGLEDLE
MYLERKLSLRQLPGTF*
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mRNA from alignment at chr6:256897..258597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00710.1 ID=NO06G00710.1|Name=NO06G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp|location=Sequence derived from alignment at chr6:256897..258597- (Nannochloropsis oceanica)
ATGGCGTCCATCGGGGTCCCTCTGGAGCCCTACCCCGCACCGCCGCTCCA GGCTATGGGACAAGAAGGGTACGAATACCCACCCCGAGTTGTGCCCTCAG CCGAGAACTTTGAGGCGATGGTGGGGCGACTTAATCTGAAACGCCGATGG GATGGAGGAAGGGGCGGGGGAGGATCGCTGGGGGCGAAGACCAAAAGCCC TACAGCGGTAGCCGAGAAGGACCTCGCGTCATCCTTGCAAAGCATAGAGG ACGCAATGCGTGACCTGCTAATCGTGGCAGACCTGGTGCACGTGGCTCGC GATGAGCGCTCCTTTATCGGACAGGAGAGTCTGACTGAGAGTCAGTTGCC GGGGGATGATGCCCTGCCCTTGCCCGTCTCATACATTGCGCCCGAGATCG TGTTGGAGATGAAGAAGAATAGTCTGGCTCAGGCAGCGAACGACATGGCT ACCTGGGTGCAGCAGATGCAGGCCACGATTAACAAGAGCCGGCGTCTGGT AGGAACCGTGGCGGGGCTCCGCCATACCACGAGGTTGCGGGCTGGCGGAC GCAACATGGCCTTGGCACGGCCACTGTCTGCTGGAGATCCTCTGTCGGTT CTGATAGACACAAAGAAAGGCCCTCTTATTCTTCCTTTCAGGATCAACTC AGACGGAATTCCGCATGTTCTTGGGCAAGGGGAGAAGGCCCGACAAGACC TGTTGGGAATGATGCCGGCACCAACTGCTTCTAGTAGCTTACATGTCTAT GTGTTTGGTAGACAGCGGGGCTCCTATGCATGTTCCTCGTCACGGCAGTC TCTACCGACACAGAAAGCAGAAAATTCTGCTGGATTGGCTCATAGTCTTC AGGAGCTGGACGATGAAGCCTATATGGGGCGGTTATTCGAATTCTTCCGA CGAGAAGTCACCAATCCTGCCCAGGCGTGGGTAGACCGATGTGGTGTTTG CAAGGGAAGCGACAGAGCAAGTCTGGACACTCGTCAGGCAGTCAAGGCCA TCGGTGAGGAAGATGGAGAAAATAAAGAGGTGTTCGGAAGAGTGCACGCC ATAGACATGGCTTTACAGGTAGCAGAGGCAACGGGGCAGCATATTGTAGT TGAGATTGATAATTACCACAGACTGGCCATTGAATTTGGTGCCGGAAAAA TAGCCAGACAACCATCGTTGTCCTCCCCACAAGCAGCCTCTTTACAGCGT TTAAGTGAGCTAGCTTATATGCGCTTGATAGAGTTAGGGATGCTGCAAGG AAGGAAGGACTCGAGGCAAGAAGAGAAGGGTGATGAACAGATCGAGGAGC ACTGGGGCGACGTGTTAGATCATACAATCTTACTCCGTGTGGCGAAAGAA TTAGCACACCATCAATTTATAGAAAGTCTTTTATCGCGGCTGTCACGAAT TTTGAGAAAGGTGAGAAAGTCTACGGTACCAACCATTGTGGAAACTCTTC AGTGGGTCGAGTACCCTTTTACGGTGCCCATTTCGCAGCTTGTGGTCATT GGTAGAAGTCAGGAGGCAAAATCGTTCCTTCTTGATATTCAAGTCCGCAC GACTTCTCTTCGTGTGTCGTGGACAAGCAGCAATGGAGATGGCAAAGGAG ACCGCACGTCGACGATAACAGAGGAGCTGGCGGGTCTTGAAGACCTAGAG ATGTATCTCGAAAGAAAACTCTCTTTACGACAGCTACCCGGGACGTTCTG A
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Coding sequence (CDS) from alignment at chr6:256897..258597-

>NO06G00710.1 ID=NO06G00710.1|Name=NO06G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at chr6:256897..258597- (Nannochloropsis oceanica)
ATGGCGTCCATCGGGGTCCCTCTGGAGCCCTACCCCGCACCGCCGCTCCA
GGCTATGGGACAAGAAGGGTACGAATACCCACCCCGAGTTGTGCCCTCAG
CCGAGAACTTTGAGGCGATGGTGGGGCGACTTAATCTGAAACGCCGATGG
GATGGAGGAAGGGGCGGGGGAGGATCGCTGGGGGCGAAGACCAAAAGCCC
TACAGCGGTAGCCGAGAAGGACCTCGCGTCATCCTTGCAAAGCATAGAGG
ACGCAATGCGTGACCTGCTAATCGTGGCAGACCTGGTGCACGTGGCTCGC
GATGAGCGCTCCTTTATCGGACAGGAGAGTCTGACTGAGAGTCAGTTGCC
GGGGGATGATGCCCTGCCCTTGCCCGTCTCATACATTGCGCCCGAGATCG
TGTTGGAGATGAAGAAGAATAGTCTGGCTCAGGCAGCGAACGACATGGCT
ACCTGGGTGCAGCAGATGCAGGCCACGATTAACAAGAGCCGGCGTCTGGT
AGGAACCGTGGCGGGGCTCCGCCATACCACGAGGTTGCGGGCTGGCGGAC
GCAACATGGCCTTGGCACGGCCACTGTCTGCTGGAGATCCTCTGTCGGTT
CTGATAGACACAAAGAAAGGCCCTCTTATTCTTCCTTTCAGGATCAACTC
AGACGGAATTCCGCATGTTCTTGGGCAAGGGGAGAAGGCCCGACAAGACC
TGTTGGGAATGATGCCGGCACCAACTGCTTCTAGTAGCTTACATGTCTAT
GTGTTTGGTAGACAGCGGGGCTCCTATGCATGTTCCTCGTCACGGCAGTC
TCTACCGACACAGAAAGCAGAAAATTCTGCTGGATTGGCTCATAGTCTTC
AGGAGCTGGACGATGAAGCCTATATGGGGCGGTTATTCGAATTCTTCCGA
CGAGAAGTCACCAATCCTGCCCAGGCGTGGGTAGACCGATGTGGTGTTTG
CAAGGGAAGCGACAGAGCAAGTCTGGACACTCGTCAGGCAGTCAAGGCCA
TCGGTGAGGAAGATGGAGAAAATAAAGAGGTGTTCGGAAGAGTGCACGCC
ATAGACATGGCTTTACAGGTAGCAGAGGCAACGGGGCAGCATATTGTAGT
TGAGATTGATAATTACCACAGACTGGCCATTGAATTTGGTGCCGGAAAAA
TAGCCAGACAACCATCGTTGTCCTCCCCACAAGCAGCCTCTTTACAGCGT
TTAAGTGAGCTAGCTTATATGCGCTTGATAGAGTTAGGGATGCTGCAAGG
AAGGAAGGACTCGAGGCAAGAAGAGAAGGGTGATGAACAGATCGAGGAGC
ACTGGGGCGACGTGTTAGATCATACAATCTTACTCCGTGTGGCGAAAGAA
TTAGCACACCATCAATTTATAGAAAGTCTTTTATCGCGGCTGTCACGAAT
TTTGAGAAAGGTGAGAAAGTCTACGGTACCAACCATTGTGGAAACTCTTC
AGTGGGTCGAGTACCCTTTTACGGTGCCCATTTCGCAGCTTGTGGTCATT
GGTAGAAGTCAGGAGGCAAAATCGTTCCTTCTTGATATTCAAGTCCGCAC
GACTTCTCTTCGTGTGTCGTGGACAAGCAGCAATGGAGATGGCAAAGGAG
ACCGCACGTCGACGATAACAGAGGAGCTGGCGGGTCTTGAAGACCTAGAG
ATGTATCTCGAAAGAAAACTCTCTTTACGACAGCTACCCGGGACGTTCTG
A
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Synonyms
Publications