|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:256897..258597 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00710.1 vs.
Match: EWM26123.1 (hypothetical protein Naga_100014g53 [Nannochloropsis gaditana]) HSP 1 Score: 446.0 bits (1146), Expect = 1.700e-121 Identity = 262/566 (46.29%), Postives = 368/566 (65.02%), Query Frame = 0
Query: 7 PLEPYPAPPLQAMGQEGYEYPPRVVPSAENFEAMVGRLNLKRRWDGGRGGGGSLGAKTKSPTAVAEKDLASSLQSIEDAMRDLLIVADLVHVARDERSFIGQESLTESQLPGDDALPLPVSYIAPEIVLEMKKNSLAQAANDMATWVQQMQATINKSRRLVGTVAGLRHTTRLRAGGRNMALARPLSAGDPLSVLIDTKKGPLILPFRINSDGIPHVLGQ-GEKARQDLLGMMPAPTASSSLHVYVFGRQRGSYACSSSRQSLPTQKAENSAGLAHSLQELDDEAYMGRLFEFFRREVTNPAQAWVDRCGVCKGSDRASLDTRQAVKAIGEE----DGENKEVFG--RVHAIDMALQVAEATGQHIVVEIDNYHRLAIEFGAGKIARQPSLSSPQAASLQRLSELAYMRLIELGMLQGRKDSRQEEKGDEQIEEHWGDVLDHTILLRVAKELAHHQFIESLLSRLSRILRKVRKSTVPTIVETLQWVEYPFTVPISQLVVIGRSQ--EAKSFLLDIQVRTTSLRVSWTSSNGDGKGDRTSTITEELAGLEDLEMYLERKLSLRQLP 564
PLEPYPAPPLQA+ +EG+EYPP+ +P AE F++M+ L K +W G GGG L + AEKDLAS+L+ +E+AMRDLLIVADL+HVAR+ERSFIGQ+SLT + L +PVSYIAPE++ EMKK S++ AANDM +WV++M T+ K RRL T+A LR T+RL+AGG L RPLSAGDP+SVL DTK+GP+ LP +I++ GIPHV G+ G +A Q+ G+ P+ +S L VY+ +G+ A +S + + T + + GLA SLQ L+DEAYMG++FE R EV PAQ WVDR + D A+G+E DG +K G R+ + QV E +G+ +VVE++ +H L I FG+G R P L ++ SL R+ +LA++RLIEL +G+ E + DE E IL R+ E++H F++ L+ L ++R V+ TVPT +E+ +WV +PF+ P S V++GR + EA++FL+DI+V TS+RVS+T S GK +RT + T+ L+GL DL++YLER L+LR+ P
Sbjct: 6 PLEPYPAPPLQAIDKEGFEYPPQPLPPAELFQSMLWYLRSKGQWTGFSGGGAKLPTAARRSLEPAEKDLASALECVEEAMRDLLIVADLMHVAREERSFIGQDSLTNAHL-SIGTPQVPVSYIAPEVIFEMKKRSMSHAANDMTSWVKRMHETLQKGRRLTKTMAALRRTSRLQAGGLKAILTRPLSAGDPVSVLFDTKQGPVALPLKIDASGIPHVSGRAGVEAEQEETGVAPSQPPTSCLRVYLTDGAQGTSAECASWRPIDTGRVDGPGGLALSLQALEDEAYMGQVFESVRLEVAAPAQPWVDR-NIFPERD-----------AVGDESSSIDGRHKTYDGLARLRPVGSPYQVVEVSGEEVVVEVNPFHHLGIGFGSGLDGR-PRLRPSRSDSLHRVCQLAFVRLIELTSRRGKPFEEHEVQEDEYPE---------GILARLTVEVSHLLFVDRLVMLLDELVRTVKDPTVPTTLESWRWVTFPFSAPESHFVILGRKEDCEAEAFLIDIRVTGTSVRVSYTFSRQGGKQNRTLS-TDALSGLGDLKVYLERHLALRRPP 547
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00710.1 ID=NO06G00710.1|Name=NO06G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp ATGGCGTCCATCGGGGTCCCTCTGGAGCCCTACCCCGCACCGCCGCTCCA GGCTATGGGACAAGAAGGGTACGAATACCCACCCCGAGTTGTGCCCTCAG CCGAGAACTTTGAGGCGATGGTGGGGCGACTTAATCTGAAACGCCGATGG GATGGAGGAAGGGGCGGGGGAGGATCGCTGGGGGCGAAGACCAAAAGCCC TACAGCGGTAGCCGAGAAGGACCTCGCGTCATCCTTGCAAAGCATAGAGG ACGCAATGCGTGACCTGCTAATCGTGGCAGACCTGGTGCACGTGGCTCGC GATGAGCGCTCCTTTATCGGACAGGAGAGTCTGACTGAGAGTCAGTTGCC GGGGGATGATGCCCTGCCCTTGCCCGTCTCATACATTGCGCCCGAGATCG TGTTGGAGATGAAGAAGAATAGTCTGGCTCAGGCAGCGAACGACATGGCT ACCTGGGTGCAGCAGATGCAGGCCACGATTAACAAGAGCCGGCGTCTGGT AGGAACCGTGGCGGGGCTCCGCCATACCACGAGGTTGCGGGCTGGCGGAC GCAACATGGCCTTGGCACGGCCACTGTCTGCTGGAGATCCTCTGTCGGTT CTGATAGACACAAAGAAAGGCCCTCTTATTCTTCCTTTCAGGATCAACTC AGACGGAATTCCGCATGTTCTTGGGCAAGGGGAGAAGGCCCGACAAGACC TGTTGGGAATGATGCCGGCACCAACTGCTTCTAGTAGCTTACATGTCTAT GTGTTTGGTAGACAGCGGGGCTCCTATGCATGTTCCTCGTCACGGCAGTC TCTACCGACACAGAAAGCAGAAAATTCTGCTGGATTGGCTCATAGTCTTC AGGAGCTGGACGATGAAGCCTATATGGGGCGGTTATTCGAATTCTTCCGA CGAGAAGTCACCAATCCTGCCCAGGCGTGGGTAGACCGATGTGGTGTTTG CAAGGGAAGCGACAGAGCAAGTCTGGACACTCGTCAGGCAGTCAAGGCCA TCGGTGAGGAAGATGGAGAAAATAAAGAGGTGTTCGGAAGAGTGCACGCC ATAGACATGGCTTTACAGGTAGCAGAGGCAACGGGGCAGCATATTGTAGT TGAGATTGATAATTACCACAGACTGGCCATTGAATTTGGTGCCGGAAAAA TAGCCAGACAACCATCGTTGTCCTCCCCACAAGCAGCCTCTTTACAGCGT TTAAGTGAGCTAGCTTATATGCGCTTGATAGAGTTAGGGATGCTGCAAGG AAGGAAGGACTCGAGGCAAGAAGAGAAGGGTGATGAACAGATCGAGGAGC ACTGGGGCGACGTGTTAGATCATACAATCTTACTCCGTGTGGCGAAAGAA TTAGCACACCATCAATTTATAGAAAGTCTTTTATCGCGGCTGTCACGAAT TTTGAGAAAGGTGAGAAAGTCTACGGTACCAACCATTGTGGAAACTCTTC AGTGGGTCGAGTACCCTTTTACGGTGCCCATTTCGCAGCTTGTGGTCATT GGTAGAAGTCAGGAGGCAAAATCGTTCCTTCTTGATATTCAAGTCCGCAC GACTTCTCTTCGTGTGTCGTGGACAAGCAGCAATGGAGATGGCAAAGGAG ACCGCACGTCGACGATAACAGAGGAGCTGGCGGGTCTTGAAGACCTAGAG ATGTATCTCGAAAGAAAACTCTCTTTACGACAGCTACCCGGGACGTTCTG A back to topprotein sequence of NO06G00710.1 >NO06G00710.1-protein ID=NO06G00710.1-protein|Name=NO06G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp MASIGVPLEPYPAPPLQAMGQEGYEYPPRVVPSAENFEAMVGRLNLKRRW DGGRGGGGSLGAKTKSPTAVAEKDLASSLQSIEDAMRDLLIVADLVHVAR DERSFIGQESLTESQLPGDDALPLPVSYIAPEIVLEMKKNSLAQAANDMA TWVQQMQATINKSRRLVGTVAGLRHTTRLRAGGRNMALARPLSAGDPLSV LIDTKKGPLILPFRINSDGIPHVLGQGEKARQDLLGMMPAPTASSSLHVY VFGRQRGSYACSSSRQSLPTQKAENSAGLAHSLQELDDEAYMGRLFEFFR REVTNPAQAWVDRCGVCKGSDRASLDTRQAVKAIGEEDGENKEVFGRVHA IDMALQVAEATGQHIVVEIDNYHRLAIEFGAGKIARQPSLSSPQAASLQR LSELAYMRLIELGMLQGRKDSRQEEKGDEQIEEHWGDVLDHTILLRVAKE LAHHQFIESLLSRLSRILRKVRKSTVPTIVETLQWVEYPFTVPISQLVVI GRSQEAKSFLLDIQVRTTSLRVSWTSSNGDGKGDRTSTITEELAGLEDLE MYLERKLSLRQLPGTF* back to topmRNA from alignment at chr6:256897..258597- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00710.1 ID=NO06G00710.1|Name=NO06G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp|location=Sequence derived from alignment at chr6:256897..258597- (Nannochloropsis oceanica) ATGGCGTCCATCGGGGTCCCTCTGGAGCCCTACCCCGCACCGCCGCTCCA
GGCTATGGGACAAGAAGGGTACGAATACCCACCCCGAGTTGTGCCCTCAG
CCGAGAACTTTGAGGCGATGGTGGGGCGACTTAATCTGAAACGCCGATGG
GATGGAGGAAGGGGCGGGGGAGGATCGCTGGGGGCGAAGACCAAAAGCCC
TACAGCGGTAGCCGAGAAGGACCTCGCGTCATCCTTGCAAAGCATAGAGG
ACGCAATGCGTGACCTGCTAATCGTGGCAGACCTGGTGCACGTGGCTCGC
GATGAGCGCTCCTTTATCGGACAGGAGAGTCTGACTGAGAGTCAGTTGCC
GGGGGATGATGCCCTGCCCTTGCCCGTCTCATACATTGCGCCCGAGATCG
TGTTGGAGATGAAGAAGAATAGTCTGGCTCAGGCAGCGAACGACATGGCT
ACCTGGGTGCAGCAGATGCAGGCCACGATTAACAAGAGCCGGCGTCTGGT
AGGAACCGTGGCGGGGCTCCGCCATACCACGAGGTTGCGGGCTGGCGGAC
GCAACATGGCCTTGGCACGGCCACTGTCTGCTGGAGATCCTCTGTCGGTT
CTGATAGACACAAAGAAAGGCCCTCTTATTCTTCCTTTCAGGATCAACTC
AGACGGAATTCCGCATGTTCTTGGGCAAGGGGAGAAGGCCCGACAAGACC
TGTTGGGAATGATGCCGGCACCAACTGCTTCTAGTAGCTTACATGTCTAT
GTGTTTGGTAGACAGCGGGGCTCCTATGCATGTTCCTCGTCACGGCAGTC
TCTACCGACACAGAAAGCAGAAAATTCTGCTGGATTGGCTCATAGTCTTC
AGGAGCTGGACGATGAAGCCTATATGGGGCGGTTATTCGAATTCTTCCGA
CGAGAAGTCACCAATCCTGCCCAGGCGTGGGTAGACCGATGTGGTGTTTG
CAAGGGAAGCGACAGAGCAAGTCTGGACACTCGTCAGGCAGTCAAGGCCA
TCGGTGAGGAAGATGGAGAAAATAAAGAGGTGTTCGGAAGAGTGCACGCC
ATAGACATGGCTTTACAGGTAGCAGAGGCAACGGGGCAGCATATTGTAGT
TGAGATTGATAATTACCACAGACTGGCCATTGAATTTGGTGCCGGAAAAA
TAGCCAGACAACCATCGTTGTCCTCCCCACAAGCAGCCTCTTTACAGCGT
TTAAGTGAGCTAGCTTATATGCGCTTGATAGAGTTAGGGATGCTGCAAGG
AAGGAAGGACTCGAGGCAAGAAGAGAAGGGTGATGAACAGATCGAGGAGC
ACTGGGGCGACGTGTTAGATCATACAATCTTACTCCGTGTGGCGAAAGAA
TTAGCACACCATCAATTTATAGAAAGTCTTTTATCGCGGCTGTCACGAAT
TTTGAGAAAGGTGAGAAAGTCTACGGTACCAACCATTGTGGAAACTCTTC
AGTGGGTCGAGTACCCTTTTACGGTGCCCATTTCGCAGCTTGTGGTCATT
GGTAGAAGTCAGGAGGCAAAATCGTTCCTTCTTGATATTCAAGTCCGCAC
GACTTCTCTTCGTGTGTCGTGGACAAGCAGCAATGGAGATGGCAAAGGAG
ACCGCACGTCGACGATAACAGAGGAGCTGGCGGGTCTTGAAGACCTAGAG
ATGTATCTCGAAAGAAAACTCTCTTTACGACAGCTACCCGGGACGTTCTG
A back to topCoding sequence (CDS) from alignment at chr6:256897..258597- >NO06G00710.1 ID=NO06G00710.1|Name=NO06G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at chr6:256897..258597- (Nannochloropsis oceanica) ATGGCGTCCATCGGGGTCCCTCTGGAGCCCTACCCCGCACCGCCGCTCCA GGCTATGGGACAAGAAGGGTACGAATACCCACCCCGAGTTGTGCCCTCAG CCGAGAACTTTGAGGCGATGGTGGGGCGACTTAATCTGAAACGCCGATGG GATGGAGGAAGGGGCGGGGGAGGATCGCTGGGGGCGAAGACCAAAAGCCC TACAGCGGTAGCCGAGAAGGACCTCGCGTCATCCTTGCAAAGCATAGAGG ACGCAATGCGTGACCTGCTAATCGTGGCAGACCTGGTGCACGTGGCTCGC GATGAGCGCTCCTTTATCGGACAGGAGAGTCTGACTGAGAGTCAGTTGCC GGGGGATGATGCCCTGCCCTTGCCCGTCTCATACATTGCGCCCGAGATCG TGTTGGAGATGAAGAAGAATAGTCTGGCTCAGGCAGCGAACGACATGGCT ACCTGGGTGCAGCAGATGCAGGCCACGATTAACAAGAGCCGGCGTCTGGT AGGAACCGTGGCGGGGCTCCGCCATACCACGAGGTTGCGGGCTGGCGGAC GCAACATGGCCTTGGCACGGCCACTGTCTGCTGGAGATCCTCTGTCGGTT CTGATAGACACAAAGAAAGGCCCTCTTATTCTTCCTTTCAGGATCAACTC AGACGGAATTCCGCATGTTCTTGGGCAAGGGGAGAAGGCCCGACAAGACC TGTTGGGAATGATGCCGGCACCAACTGCTTCTAGTAGCTTACATGTCTAT GTGTTTGGTAGACAGCGGGGCTCCTATGCATGTTCCTCGTCACGGCAGTC TCTACCGACACAGAAAGCAGAAAATTCTGCTGGATTGGCTCATAGTCTTC AGGAGCTGGACGATGAAGCCTATATGGGGCGGTTATTCGAATTCTTCCGA CGAGAAGTCACCAATCCTGCCCAGGCGTGGGTAGACCGATGTGGTGTTTG CAAGGGAAGCGACAGAGCAAGTCTGGACACTCGTCAGGCAGTCAAGGCCA TCGGTGAGGAAGATGGAGAAAATAAAGAGGTGTTCGGAAGAGTGCACGCC ATAGACATGGCTTTACAGGTAGCAGAGGCAACGGGGCAGCATATTGTAGT TGAGATTGATAATTACCACAGACTGGCCATTGAATTTGGTGCCGGAAAAA TAGCCAGACAACCATCGTTGTCCTCCCCACAAGCAGCCTCTTTACAGCGT TTAAGTGAGCTAGCTTATATGCGCTTGATAGAGTTAGGGATGCTGCAAGG AAGGAAGGACTCGAGGCAAGAAGAGAAGGGTGATGAACAGATCGAGGAGC ACTGGGGCGACGTGTTAGATCATACAATCTTACTCCGTGTGGCGAAAGAA TTAGCACACCATCAATTTATAGAAAGTCTTTTATCGCGGCTGTCACGAAT TTTGAGAAAGGTGAGAAAGTCTACGGTACCAACCATTGTGGAAACTCTTC AGTGGGTCGAGTACCCTTTTACGGTGCCCATTTCGCAGCTTGTGGTCATT GGTAGAAGTCAGGAGGCAAAATCGTTCCTTCTTGATATTCAAGTCCGCAC GACTTCTCTTCGTGTGTCGTGGACAAGCAGCAATGGAGATGGCAAAGGAG ACCGCACGTCGACGATAACAGAGGAGCTGGCGGGTCTTGAAGACCTAGAG ATGTATCTCGAAAGAAAACTCTCTTTACGACAGCTACCCGGGACGTTCTG A back to top
|