NO06G00590, NO06G00590 (gene) Nannochloropsis oceanica

Overview
NameNO06G00590
Unique NameNO06G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1884
Alignment locationchr6:228913..230796 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:228913..230796 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO06G00590 vs. NCBI_GenBank
Match: EWM26158.1 (hypothetical protein Naga_100014g64 [Nannochloropsis gaditana])

HSP 1 Score: 134.0 bits (336), Expect = 5.200e-28
Identity = 86/201 (42.79%), Postives = 113/201 (56.22%), Query Frame = 0 
Query:    6 DHIRSTIEQDKQRHPHCSYSTIRSHFSSVLNGSSKAETLTKVVRACEGEALVEIYTQKNESDDNTGAHGETAMQHGFSHPQQLPPMFPLPGMGDRAGGQG-----------GAVAEDMLSSLFGHMLEGVFQEFAGGNGRXXXXXXXXXXXNIFSGGFPFPVLPSDPYD--CQQQQQHRQEPHCRMPRPPHSF-----PRG 189
            DH+ + I++D++ HP CSYST+RSHFSS LNGSSKAETLTK++R C+GEA VEIY  K ESD+     GE   +  + H + L P  P PG+G     +G           G+ AE +L+ +FGHML+G  Q F+GG              ++     P P+ P   YD  CQ     RQEP+ R+PRPP S      PRG
Sbjct:    7 DHMHAAIQEDQREHPQCSYSTVRSHFSSFLNGSSKAETLTKIIRNCQGEAPVEIYRHKQESDE-ASERGEGLFRE-YPHQRGLMPPLPWPGVGSEGSVRGDVEHEDRLGPRGSGAEGVLAHMFGHMLDGALQNFSGGR-----WDGNSAFGDLLGKVLP-PLFPPSHYDEGCQ-----RQEPY-RVPRPPPSLXXXXXPRG 193
The following BLAST results are available for this feature:
BLAST of NO06G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26158.15.200e-2842.79hypothetical protein Naga_100014g64 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00590.1NO06G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00590.1NO06G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00590 ID=NO06G00590|Name=NO06G00590|organism=Nannochloropsis oceanica|type=gene|length=1884bp
TTTTCCCTCTCTCTTATCGTATAATTAATTTGATTCTTTCGAGCCGAAGC
CACTAGATTACATTTTCTTGGATACCTCACTTTTTTTTTAGGTCCCTCAC
CACAACGACCTTTGTCTCAATTTCAAGAACCGACACAGCCTGATCGTGCT
CCTCGTCATATTCTGTATAGTCTCCCTCGCCCAAGTCCGCATTCTCGAAC
CGTTTACCCCCTTCGGACACGACCACAAAATCCTCGCGCGCTTGCCACGC
ATCCACGTCCAGGCCCCTAGCCTCGATGCGTGCCACCGTCTTAAAGTTGC
CGCTGTCCCCGGCAGTGTAGGAAAGAGTCTCGAGAATTACGAGGTTGGCG
GGTTTCGTCATACCGGGGAGCTTTACCTGCAGGTGGCATGTGCCCCGGCT
GTCGGCCATCTCAACCTCGTCAGATTGGTCGATGTAGATGCCCTTCTTAC
CCTCCCCGTCCTTGCTAAGATCCAGGCAATACCGTCCCGTGGTGTTGATG
CTTGAGACGCCCTCGAGGTCCGCCTTGAGTTGGAGGGCGAAGACAGGCAT
TGCTGAGATGTGATGTAGCAGGGGAACTCCACCACCACACCACTCTCTCT
TGTGTGTAGAAGAATTTCGATTGAATGGATGAAAGCTGGAGTATGTACAC
AGCGGACAATACGCACAAGGTCTCGGAGTGTAGTACGAAGCAATCCGACT
GCTGCGATCCTACATGTGGTGTTCTAGATGGTCAGAGCGCAGTCGTCAAG
CGCCGACGGGGGTGAGCGAGCCCTACCCCAAGGCTTCTATGTCAGCTTTA
CAACCAAGGAGTAACACATAACGTTCTTTCTACCCAACCACTACCGTTCC
ACGTAGATATTTGTATCACTTCTCTCTGCAGACCCGTCCCTGTATAGTCC
CGCGCCTCGTCTTTTTTTGAACGAGAAGGCTTCCCCTTCCCCAGCCCCAG
CCTCAGTCATGAGCGGCACCACGGACCACATTCGAAGCACCATTGAGCAG
GACAAGCAGAGGCACCCGCACTGCTCGTACTCCACAATTCGCTCACACTT
TTCAAGCGTCTTGAATGGGAGCAGCAAAGCCGAGACGCTGACCAAGGTCG
TGAGAGCTTGTGAAGgtacgtgagagagtgtgtaccccatagactttttc
gtttcgtgcctgccccggtccctcgctcacttaatcctttctcccatccc
tctcgtccccattctcccaagGAGAGGCACTAGTTGAAATTTACACACAG
AAGAACGAAAGCGATGACAATACCGGTGCCCACGGTGAGACGGCCATGCA
GCATGGCTTCTCTCACCCTCAGCAGCTTCCGCCCATGTTTCCTCTACCAG
GCATGGGTGACAGAGCAGGAGGACAAGGAGGAGCAGTAGCAGAAGACATG
CTTTCGAGTCTCTTTGGTCATATGCTGGAAGGTGTCTTTCAAGAGTTCGC
AGGCGGCAACGGTCGAGCTGGTGGCGGTGGAGGAAGGGGAGGATTTGGGA
ATATCTTTAGTGGTGGGTTTCCCTTTCCCGTGTTACCCAGCGATCCTTAC
GATTGCCAGCAGCAACAACAGCATCGCCAGGAACCCCATTGTCGGATGCC
TCGACCACCGCATTCATTCCCCCGGGGCCATCACAAAGCAGATGATCCAC
GAAGCGGGAGCGAGGGGGAGGTGACAGAGATCTAGTGAGAGGGAGAAGAA
GGAATAGAGCGGAGCAGAGGCCAAAGTCGCGGCTTACCTTTGTAGGCGGG
GAGAAGACGAAGGGTTGGTACATGTGTAGTTCGAAACTAAAGGCGGTGGA
TCCCGAGGACCATAAACTCGGCGGTGCGAAAAGTGAGAAGAGAACGGGCA
GGAAAAGAAGGAAACAAACAAATGTATATATACA
back to top

protein sequence of NO06G00590.1

>NO06G00590.1-protein ID=NO06G00590.1-protein|Name=NO06G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MSGTTDHIRSTIEQDKQRHPHCSYSTIRSHFSSVLNGSSKAETLTKVVRA
CEGEALVEIYTQKNESDDNTGAHGETAMQHGFSHPQQLPPMFPLPGMGDR
AGGQGGAVAEDMLSSLFGHMLEGVFQEFAGGNGRAGGGGGRGGFGNIFSG
GFPFPVLPSDPYDCQQQQQHRQEPHCRMPRPPHSFPRGHHKADDPRSGSE
GEVTEI*
back to top
Synonyms
Publications