NO06G00590.1, NO06G00590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00590.1
Unique NameNO06G00590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1778
Alignment locationchr6:228913..230796 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:228913..230796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00590.1 vs.
Match: EWM26158.1 (hypothetical protein Naga_100014g64 [Nannochloropsis gaditana])

HSP 1 Score: 141.0 bits (354), Expect = 4.200e-30
Identity = 88/196 (44.90%), Postives = 115/196 (58.67%), Query Frame = 0 
Query:    6 DHIRSTIEQDKQRHPHCSYSTIRSHFSSVLNGSSKAETLTKVVRACEGEALVEIYTQKNESDDNTGAHGETAMQHGFSHPQQLPPMFPLPGMGDRAGGQG-----------GAVAEDMLSSLFGHMLEGVFQEFAGGNGRAGGGGGRGGFGNIFSGGFPFPVLPSDPYD--CQQQQQHRQEPHCRMPRPPHSFPRG 189
            DH+ + I++D++ HP CSYST+RSHFSS LNGSSKAETLTK++R C+GEA VEIY  K ESD+     GE   +  + H + L P  P PG+G     +G           G+ AE +L+ +FGHML+G  Q F+GG        G   FG++     P P+ P   YD  CQ     RQEP+ R+PRPP S P G
Sbjct:    7 DHMHAAIQEDQREHPQCSYSTVRSHFSSFLNGSSKAETLTKIIRNCQGEAPVEIYRHKQESDE-ASERGEGLFRE-YPHQRGLMPPLPWPGVGSEGSVRGDVEHEDRLGPRGSGAEGVLAHMFGHMLDGALQNFSGGR-----WDGNSAFGDLLGKVLP-PLFPPSHYDEGCQ-----RQEPY-RVPRPPPSLPPG 188
The following BLAST results are available for this feature:
BLAST of NO06G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26158.14.200e-3044.90hypothetical protein Naga_100014g64 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00590NO06G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00590.1NO06G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00590.1.cds1NO06G00590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00590.1.cds2NO06G00590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00590.1 ID=NO06G00590.1|Name=NO06G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp
TTTTCCCTCTCTCTTATCGTATAATTAATTTGATTCTTTCGAGCCGAAGC
CACTAGATTACATTTTCTTGGATACCTCACTTTTTTTTTAGGTCCCTCAC
CACAACGACCTTTGTCTCAATTTCAAGAACCGACACAGCCTGATCGTGCT
CCTCGTCATATTCTGTATAGTCTCCCTCGCCCAAGTCCGCATTCTCGAAC
CGTTTACCCCCTTCGGACACGACCACAAAATCCTCGCGCGCTTGCCACGC
ATCCACGTCCAGGCCCCTAGCCTCGATGCGTGCCACCGTCTTAAAGTTGC
CGCTGTCCCCGGCAGTGTAGGAAAGAGTCTCGAGAATTACGAGGTTGGCG
GGTTTCGTCATACCGGGGAGCTTTACCTGCAGGTGGCATGTGCCCCGGCT
GTCGGCCATCTCAACCTCGTCAGATTGGTCGATGTAGATGCCCTTCTTAC
CCTCCCCGTCCTTGCTAAGATCCAGGCAATACCGTCCCGTGGTGTTGATG
CTTGAGACGCCCTCGAGGTCCGCCTTGAGTTGGAGGGCGAAGACAGGCAT
TGCTGAGATGTGATGTAGCAGGGGAACTCCACCACCACACCACTCTCTCT
TGTGTGTAGAAGAATTTCGATTGAATGGATGAAAGCTGGAGTATGTACAC
AGCGGACAATACGCACAAGGTCTCGGAGTGTAGTACGAAGCAATCCGACT
GCTGCGATCCTACATGTGGTGTTCTAGATGGTCAGAGCGCAGTCGTCAAG
CGCCGACGGGGGTGAGCGAGCCCTACCCCAAGGCTTCTATGTCAGCTTTA
CAACCAAGGAGTAACACATAACGTTCTTTCTACCCAACCACTACCGTTCC
ACGTAGATATTTGTATCACTTCTCTCTGCAGACCCGTCCCTGTATAGTCC
CGCGCCTCGTCTTTTTTTGAACGAGAAGGCTTCCCCTTCCCCAGCCCCAG
CCTCAGTCATGAGCGGCACCACGGACCACATTCGAAGCACCATTGAGCAG
GACAAGCAGAGGCACCCGCACTGCTCGTACTCCACAATTCGCTCACACTT
TTCAAGCGTCTTGAATGGGAGCAGCAAAGCCGAGACGCTGACCAAGGTCG
TGAGAGCTTGTGAAGGAGAGGCACTAGTTGAAATTTACACACAGAAGAAC
GAAAGCGATGACAATACCGGTGCCCACGGTGAGACGGCCATGCAGCATGG
CTTCTCTCACCCTCAGCAGCTTCCGCCCATGTTTCCTCTACCAGGCATGG
GTGACAGAGCAGGAGGACAAGGAGGAGCAGTAGCAGAAGACATGCTTTCG
AGTCTCTTTGGTCATATGCTGGAAGGTGTCTTTCAAGAGTTCGCAGGCGG
CAACGGTCGAGCTGGTGGCGGTGGAGGAAGGGGAGGATTTGGGAATATCT
TTAGTGGTGGGTTTCCCTTTCCCGTGTTACCCAGCGATCCTTACGATTGC
CAGCAGCAACAACAGCATCGCCAGGAACCCCATTGTCGGATGCCTCGACC
ACCGCATTCATTCCCCCGGGGCCATCACAAAGCAGATGATCCACGAAGCG
GGAGCGAGGGGGAGGTGACAGAGATCTAGTGAGAGGGAGAAGAAGGAATA
GAGCGGAGCAGAGGCCAAAGTCGCGGCTTACCTTTGTAGGCGGGGAGAAG
ACGAAGGGTTGGTACATGTGTAGTTCGAAACTAAAGGCGGTGGATCCCGA
GGACCATAAACTCGGCGGTGCGAAAAGTGAGAAGAGAACGGGCAGGAAAA
GAAGGAAACAAACAAATGTATATATACA
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protein sequence of NO06G00590.1

>NO06G00590.1-protein ID=NO06G00590.1-protein|Name=NO06G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MSGTTDHIRSTIEQDKQRHPHCSYSTIRSHFSSVLNGSSKAETLTKVVRA
CEGEALVEIYTQKNESDDNTGAHGETAMQHGFSHPQQLPPMFPLPGMGDR
AGGQGGAVAEDMLSSLFGHMLEGVFQEFAGGNGRAGGGGGRGGFGNIFSG
GFPFPVLPSDPYDCQQQQQHRQEPHCRMPRPPHSFPRGHHKADDPRSGSE
GEVTEI*
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mRNA from alignment at chr6:228913..230796+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00590.1 ID=NO06G00590.1|Name=NO06G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp|location=Sequence derived from alignment at chr6:228913..230796+ (Nannochloropsis oceanica)
TTTTCCCTCTCTCTTATCGTATAATTAATTTGATTCTTTCGAGCCGAAGC
CACTAGATTACATTTTCTTGGATACCTCACTTTTTTTTTAGGTCCCTCAC
CACAACGACCTTTGTCTCAATTTCAAGAACCGACACAGCCTGATCGTGCT
CCTCGTCATATTCTGTATAGTCTCCCTCGCCCAAGTCCGCATTCTCGAAC
CGTTTACCCCCTTCGGACACGACCACAAAATCCTCGCGCGCTTGCCACGC
ATCCACGTCCAGGCCCCTAGCCTCGATGCGTGCCACCGTCTTAAAGTTGC
CGCTGTCCCCGGCAGTGTAGGAAAGAGTCTCGAGAATTACGAGGTTGGCG
GGTTTCGTCATACCGGGGAGCTTTACCTGCAGGTGGCATGTGCCCCGGCT
GTCGGCCATCTCAACCTCGTCAGATTGGTCGATGTAGATGCCCTTCTTAC
CCTCCCCGTCCTTGCTAAGATCCAGGCAATACCGTCCCGTGGTGTTGATG
CTTGAGACGCCCTCGAGGTCCGCCTTGAGTTGGAGGGCGAAGACAGGCAT
TGCTGAGATGTGATGTAGCAGGGGAACTCCACCACCACACCACTCTCTCT
TGTGTGTAGAAGAATTTCGATTGAATGGATGAAAGCTGGAGTATGTACAC
AGCGGACAATACGCACAAGGTCTCGGAGTGTAGTACGAAGCAATCCGACT
GCTGCGATCCTACATGTGGTGTTCTAGATGGTCAGAGCGCAGTCGTCAAG
CGCCGACGGGGGTGAGCGAGCCCTACCCCAAGGCTTCTATGTCAGCTTTA
CAACCAAGGAGTAACACATAACGTTCTTTCTACCCAACCACTACCGTTCC
ACGTAGATATTTGTATCACTTCTCTCTGCAGACCCGTCCCTGTATAGTCC
CGCGCCTCGTCTTTTTTTGAACGAGAAGGCTTCCCCTTCCCCAGCCCCAG
CCTCAGTCATGAGCGGCACCACGGACCACATTCGAAGCACCATTGAGCAG
GACAAGCAGAGGCACCCGCACTGCTCGTACTCCACAATTCGCTCACACTT
TTCAAGCGTCTTGAATGGGAGCAGCAAAGCCGAGACGCTGACCAAGGTCG
TGAGAGCTTGTGAAGGTACGTGAGAGAGTGTGTACCCCATAGACTTTTTC
GTTTCGTGCCTGCCCCGGTCCCTCGCTCACTTAATCCTTTCTCCCATCCC
TCTCGTCCCCATTCTCCCAAGGAGAGGCACTAGTTGAAATTTACACACAG
AAGAACGAAAGCGATGACAATACCGGTGCCCACGGTGAGACGGCCATGCA
GCATGGCTTCTCTCACCCTCAGCAGCTTCCGCCCATGTTTCCTCTACCAG
GCATGGGTGACAGAGCAGGAGGACAAGGAGGAGCAGTAGCAGAAGACATG
CTTTCGAGTCTCTTTGGTCATATGCTGGAAGGTGTCTTTCAAGAGTTCGC
AGGCGGCAACGGTCGAGCTGGTGGCGGTGGAGGAAGGGGAGGATTTGGGA
ATATCTTTAGTGGTGGGTTTCCCTTTCCCGTGTTACCCAGCGATCCTTAC
GATTGCCAGCAGCAACAACAGCATCGCCAGGAACCCCATTGTCGGATGCC
TCGACCACCGCATTCATTCCCCCGGGGCCATCACAAAGCAGATGATCCAC
GAAGCGGGAGCGAGGGGGAGGTGACAGAGATCTAGTGAGAGGGAGAAGAA
GGAATAGAGCGGAGCAGAGGCCAAAGTCGCGGCTTACCTTTGTAGGCGGG
GAGAAGACGAAGGGTTGGTACATGTGTAGTTCGAAACTAAAGGCGGTGGA
TCCCGAGGACCATAAACTCGGCGGTGCGAAAAGTGAGAAGAGAACGGGCA
GGAAAAGAAGGAAACAAACAAATGTATATATACA
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Coding sequence (CDS) from alignment at chr6:228913..230796+

>NO06G00590.1 ID=NO06G00590.1|Name=NO06G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at chr6:228913..230796+ (Nannochloropsis oceanica)
ATGAGCGGCACCACGGACCACATTCGAAGCACCATTGAGCAGGACAAGCA
GAGGCACCCGCACTGCTCGTACTCCACAATTCGCTCACACTTTTCAAGCG
TCTTGAATGGGAGCAGCAAAGCCGAGACGCTGACCAAGGTCGTGAGAGCT
TGTGAAGGAGAGGCACTAGTTGAAATTTACACACAGAAGAACGAAAGCGA
TGACAATACCGGTGCCCACGGTGAGACGGCCATGCAGCATGGCTTCTCTC
ACCCTCAGCAGCTTCCGCCCATGTTTCCTCTACCAGGCATGGGTGACAGA
GCAGGAGGACAAGGAGGAGCAGTAGCAGAAGACATGCTTTCGAGTCTCTT
TGGTCATATGCTGGAAGGTGTCTTTCAAGAGTTCGCAGGCGGCAACGGTC
GAGCTGGTGGCGGTGGAGGAAGGGGAGGATTTGGGAATATCTTTAGTGGT
GGGTTTCCCTTTCCCGTGTTACCCAGCGATCCTTACGATTGCCAGCAGCA
ACAACAGCATCGCCAGGAACCCCATTGTCGGATGCCTCGACCACCGCATT
CATTCCCCCGGGGCCATCACAAAGCAGATGATCCACGAAGCGGGAGCGAG
GGGGAGGTGACAGAGATCTAG
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Synonyms
Publications