NO06G00570, NO06G00570 (gene) Nannochloropsis oceanica

Overview
NameNO06G00570
Unique NameNO06G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1258
Alignment locationchr6:223319..224576 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:223319..224576 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO06G00570 vs. NCBI_GenBank
Match: EWM26086.1 (hypothetical protein Naga_100014g67 [Nannochloropsis gaditana])

HSP 1 Score: 229.9 bits (585), Expect = 1.000e-56
Identity = 150/268 (55.97%), Postives = 181/268 (67.54%), Query Frame = 0 
Query:   15 HATPFR-QLH--SLHAFLLLVILLYLISVIQAFVMIPATWQARQQQPSRTTTAHVRSVF--ASNGEIDSQGIDKAIINAVMAAAEXXXXXXXXXXXXXXXXXXDDGPSGPRDFYSVNAADEELAEAQERYAQARARRERFLMEAQANFRQMAEKADEELQAFVDQEEAMAQALELRVKEVKEVKEEVSALVKEADELMGGGKKIMALFDVVSTLSFLVVLDTFYVSYLAYRGSELLTTSLATEVILGGFLFFKIKQRETALLEKEGNK 278
            HA PF  QL+  +      +V LL LI + QAF+  P       Q    +    VR  F   SN  +DSQ +D+AI+ + MAA +                  D+GP   RDFYSV AA EE+AEA+ERY QARARRERFLMEAQANFR++AE+ADEELQAFV +EEA AQ LE R KEV+EVKEEVS LVKEADEL  GGK ++A  D+V  LS LVVLDTFYVSYL YRGS+L+++SLATE +LGG LFFKIKQRE A L+KE ++
Sbjct:    5 HAPPFNLQLYYGARRVVPAIVALLCLIRLTQAFLAFP------YQGGKHSQVVFVRKPFLLVSNDGLDSQSVDEAIMKSAMAAIQ-EDKAQRQQKKQEQDSIQDEGPRNLRDFYSVEAAVEEMAEAEERYVQARARRERFLMEAQANFRKLAERADEELQAFVAEEEAAAQDLERRAKEVREVKEEVSVLVKEADELRAGGKGLLASVDLVLALSILVVLDTFYVSYLTYRGSDLVSSSLATEALLGGVLFFKIKQREAAQLDKEKSR 265
The following BLAST results are available for this feature:
BLAST of NO06G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26086.11.000e-5655.97hypothetical protein Naga_100014g67 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000393NSK000393Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00570.1NO06G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g67gene4427Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00570.1NO06G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00570 ID=NO06G00570|Name=NO06G00570|organism=Nannochloropsis oceanica|type=gene|length=1258bp
ACAGGTCGGGCTCCATTCTGTCTGGTTTTGCTCGTGGGCTGACTGCAAGC
CCGCTACCATGACTCCGAGTATCCTCCTCCGCACACGACAACGACGACGA
CACGCAACCCCTTTCCGGCAGCTTCATTCCCTCCATGCTTTCCTCCTCCT
TGTTATTCTTCTCTATCTCATCAGTGTAATCCAGGCCTTTGTCATGATTC
CTGCGACGTGGCAGGCCCGGCAGCAGCAGCCATCACGCACTACCACTGCC
CACGTCCGGTCCGTTTTTGCCAGCAATGGGGAGATAGATAGCCAAGGCAT
CGACAAGGCCATTATCAATGCAGTCATGGCAGCTGCTGAAAAGGAGCAAG
CTCAATCACAGCCACAAAGCAAGGGGGATGGCAAGGCCAAGGACGACGAC
GGGCCGAGTGGCCCCAGGGATTTTTACAGCGTGAATGCCGCAGACGAAGA
ACTCGCCGAGGCACAAGAACGCTATGCTCAGGCCCGAGCGCGGCGTGAGC
GCTTCTTAATGGAGGCACAGGCCAACTTTCGCCAAATGGCAGAGAAAGCT
GATGAGGAGTTGCAGGCGTTCGTGGACCAGGAGGAGGCGATGGCGCAAGC
GCTGGAACTACGGGTGAAGGAAGTGAAAGAGGTGAAAGAGGAGGTCTCGG
CGCTCGTCAAGGAGGCAGACGAGCTGATGGGAGGAGGAAAGAAAATTATG
GCTTTGTTTGACGTGGTCTCAACATTGTCCTTTTTGGTGGTGCTGGACAC
GTTTTATGTGAGCTATCTCGCCTACCGAGGTAGCGAGCTGTTAACCACGT
CCTTAGCCACCGAGGTCATCTTGGGTGGGTTCTTGTTCTTTAAGgtaaag
tggacggaaaaggatgtcatattcagggaaaacgaaggaaagcatggggc
tgaatttcggtgcagagggtgcgcaagccataacataggcacgcaaggag
gaaaaacacaatcaccttctcactcctcccccctccacctccctcttccg
cgtccgcacacactcatgaatactttcagATCAAGCAACGGGAGACGGCC
CTATTAGAAAAAGAAGGGAACAAGAGCACTAGCACAAACAGCAAGAACAT
CAGCAATAATAATAGCAACAACAGCCAGCAACGGAGGATATGAAGAAAAA
GGGAAAGTTAAAATCTGGAAAAGAGAAGCCAGGTAGACGGGATGATTAAG
CTGTGTACAACAGTCCTTGACTGTTCGGAATGCAAAAAATGTGGATGGAC
TCTGTTAT
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protein sequence of NO06G00570.1

>NO06G00570.1-protein ID=NO06G00570.1-protein|Name=NO06G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MTPSILLRTRQRRRHATPFRQLHSLHAFLLLVILLYLISVIQAFVMIPAT
WQARQQQPSRTTTAHVRSVFASNGEIDSQGIDKAIINAVMAAAEKEQAQS
QPQSKGDGKAKDDDGPSGPRDFYSVNAADEELAEAQERYAQARARRERFL
MEAQANFRQMAEKADEELQAFVDQEEAMAQALELRVKEVKEVKEEVSALV
KEADELMGGGKKIMALFDVVSTLSFLVVLDTFYVSYLAYRGSELLTTSLA
TEVILGGFLFFKIKQRETALLEKEGNKSTSTNSKNISNNNSNNSQQRRI*
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Synonyms
Publications