NO06G00570.1, NO06G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00570.1
Unique NameNO06G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1073
Alignment locationchr6:223319..224576 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:223319..224576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00570.1 vs.
Match: EWM26086.1 (hypothetical protein Naga_100014g67 [Nannochloropsis gaditana])

HSP 1 Score: 234.6 bits (597), Expect = 4.100e-58
Identity = 161/285 (56.49%), Postives = 196/285 (68.77%), Query Frame = 0 
Query:   15 HATPFR-QLH--SLHAFLLLVILLYLISVIQAFVMIPATWQARQQQPSRTTTAHVRSVF--ASNGEIDSQGIDKAIINAVMAAAEKEQAQSQPQSKGDGKAKDDDGPSGPRDFYSVNAADEELAEAQERYAQARARRERFLMEAQANFRQMAEKADEELQAFVDQEEAMAQALELRVKEVKEVKEEVSALVKEADELMGGGKKIMALFDVVSTLSFLVVLDTFYVSYLAYRGSELLTTSLATEVILGGFLFFKIKQRETALLEKEGNKSTSTNSKNISNNNSNNS 295
            HA PF  QL+  +      +V LL LI + QAF+  P       Q    +    VR  F   SN  +DSQ +D+AI+ + MAA ++++AQ Q Q K +  +  D+GP   RDFYSV AA EE+AEA+ERY QARARRERFLMEAQANFR++AE+ADEELQAFV +EEA AQ LE R KEV+EVKEEVS LVKEADEL  GGK ++A  D+V  LS LVVLDTFYVSYL YRGS+L+++SLATE +LGG LFFKIKQRE A L+KE  KS   +  N   N  N S
Sbjct:    5 HAPPFNLQLYYGARRVVPAIVALLCLIRLTQAFLAFP------YQGGKHSQVVFVRKPFLLVSNDGLDSQSVDEAIMKSAMAAIQEDKAQRQ-QKKQEQDSIQDEGPRNLRDFYSVEAAVEEMAEAEERYVQARARRERFLMEAQANFRKLAERADEELQAFVAEEEAAAQDLERRAKEVREVKEEVSVLVKEADELRAGGKGLLASVDLVLALSILVVLDTFYVSYLTYRGSDLVSSSLATEALLGGVLFFKIKQREAAQLDKE--KSRPDDGSNERRNLRNGS 280
The following BLAST results are available for this feature:
BLAST of NO06G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26086.14.100e-5856.49hypothetical protein Naga_100014g67 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00570NO06G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00570.1NO06G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00570.1.cds1NO06G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00570.1.cds2NO06G00570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00570.1 ID=NO06G00570.1|Name=NO06G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp
ACAGGTCGGGCTCCATTCTGTCTGGTTTTGCTCGTGGGCTGACTGCAAGC
CCGCTACCATGACTCCGAGTATCCTCCTCCGCACACGACAACGACGACGA
CACGCAACCCCTTTCCGGCAGCTTCATTCCCTCCATGCTTTCCTCCTCCT
TGTTATTCTTCTCTATCTCATCAGTGTAATCCAGGCCTTTGTCATGATTC
CTGCGACGTGGCAGGCCCGGCAGCAGCAGCCATCACGCACTACCACTGCC
CACGTCCGGTCCGTTTTTGCCAGCAATGGGGAGATAGATAGCCAAGGCAT
CGACAAGGCCATTATCAATGCAGTCATGGCAGCTGCTGAAAAGGAGCAAG
CTCAATCACAGCCACAAAGCAAGGGGGATGGCAAGGCCAAGGACGACGAC
GGGCCGAGTGGCCCCAGGGATTTTTACAGCGTGAATGCCGCAGACGAAGA
ACTCGCCGAGGCACAAGAACGCTATGCTCAGGCCCGAGCGCGGCGTGAGC
GCTTCTTAATGGAGGCACAGGCCAACTTTCGCCAAATGGCAGAGAAAGCT
GATGAGGAGTTGCAGGCGTTCGTGGACCAGGAGGAGGCGATGGCGCAAGC
GCTGGAACTACGGGTGAAGGAAGTGAAAGAGGTGAAAGAGGAGGTCTCGG
CGCTCGTCAAGGAGGCAGACGAGCTGATGGGAGGAGGAAAGAAAATTATG
GCTTTGTTTGACGTGGTCTCAACATTGTCCTTTTTGGTGGTGCTGGACAC
GTTTTATGTGAGCTATCTCGCCTACCGAGGTAGCGAGCTGTTAACCACGT
CCTTAGCCACCGAGGTCATCTTGGGTGGGTTCTTGTTCTTTAAGATCAAG
CAACGGGAGACGGCCCTATTAGAAAAAGAAGGGAACAAGAGCACTAGCAC
AAACAGCAAGAACATCAGCAATAATAATAGCAACAACAGCCAGCAACGGA
GGATATGAAGAAAAAGGGAAAGTTAAAATCTGGAAAAGAGAAGCCAGGTA
GACGGGATGATTAAGCTGTGTACAACAGTCCTTGACTGTTCGGAATGCAA
AAAATGTGGATGGACTCTGTTAT
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protein sequence of NO06G00570.1

>NO06G00570.1-protein ID=NO06G00570.1-protein|Name=NO06G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MTPSILLRTRQRRRHATPFRQLHSLHAFLLLVILLYLISVIQAFVMIPAT
WQARQQQPSRTTTAHVRSVFASNGEIDSQGIDKAIINAVMAAAEKEQAQS
QPQSKGDGKAKDDDGPSGPRDFYSVNAADEELAEAQERYAQARARRERFL
MEAQANFRQMAEKADEELQAFVDQEEAMAQALELRVKEVKEVKEEVSALV
KEADELMGGGKKIMALFDVVSTLSFLVVLDTFYVSYLAYRGSELLTTSLA
TEVILGGFLFFKIKQRETALLEKEGNKSTSTNSKNISNNNSNNSQQRRI*
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mRNA from alignment at chr6:223319..224576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00570.1 ID=NO06G00570.1|Name=NO06G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1258bp|location=Sequence derived from alignment at chr6:223319..224576- (Nannochloropsis oceanica)
ACAGGTCGGGCTCCATTCTGTCTGGTTTTGCTCGTGGGCTGACTGCAAGC
CCGCTACCATGACTCCGAGTATCCTCCTCCGCACACGACAACGACGACGA
CACGCAACCCCTTTCCGGCAGCTTCATTCCCTCCATGCTTTCCTCCTCCT
TGTTATTCTTCTCTATCTCATCAGTGTAATCCAGGCCTTTGTCATGATTC
CTGCGACGTGGCAGGCCCGGCAGCAGCAGCCATCACGCACTACCACTGCC
CACGTCCGGTCCGTTTTTGCCAGCAATGGGGAGATAGATAGCCAAGGCAT
CGACAAGGCCATTATCAATGCAGTCATGGCAGCTGCTGAAAAGGAGCAAG
CTCAATCACAGCCACAAAGCAAGGGGGATGGCAAGGCCAAGGACGACGAC
GGGCCGAGTGGCCCCAGGGATTTTTACAGCGTGAATGCCGCAGACGAAGA
ACTCGCCGAGGCACAAGAACGCTATGCTCAGGCCCGAGCGCGGCGTGAGC
GCTTCTTAATGGAGGCACAGGCCAACTTTCGCCAAATGGCAGAGAAAGCT
GATGAGGAGTTGCAGGCGTTCGTGGACCAGGAGGAGGCGATGGCGCAAGC
GCTGGAACTACGGGTGAAGGAAGTGAAAGAGGTGAAAGAGGAGGTCTCGG
CGCTCGTCAAGGAGGCAGACGAGCTGATGGGAGGAGGAAAGAAAATTATG
GCTTTGTTTGACGTGGTCTCAACATTGTCCTTTTTGGTGGTGCTGGACAC
GTTTTATGTGAGCTATCTCGCCTACCGAGGTAGCGAGCTGTTAACCACGT
CCTTAGCCACCGAGGTCATCTTGGGTGGGTTCTTGTTCTTTAAGGTAAAG
TGGACGGAAAAGGATGTCATATTCAGGGAAAACGAAGGAAAGCATGGGGC
TGAATTTCGGTGCAGAGGGTGCGCAAGCCATAACATAGGCACGCAAGGAG
GAAAAACACAATCACCTTCTCACTCCTCCCCCCTCCACCTCCCTCTTCCG
CGTCCGCACACACTCATGAATACTTTCAGATCAAGCAACGGGAGACGGCC
CTATTAGAAAAAGAAGGGAACAAGAGCACTAGCACAAACAGCAAGAACAT
CAGCAATAATAATAGCAACAACAGCCAGCAACGGAGGATATGAAGAAAAA
GGGAAAGTTAAAATCTGGAAAAGAGAAGCCAGGTAGACGGGATGATTAAG
CTGTGTACAACAGTCCTTGACTGTTCGGAATGCAAAAAATGTGGATGGAC
TCTGTTAT
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Coding sequence (CDS) from alignment at chr6:223319..224576-

>NO06G00570.1 ID=NO06G00570.1|Name=NO06G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr6:223319..224576- (Nannochloropsis oceanica)
ATGACTCCGAGTATCCTCCTCCGCACACGACAACGACGACGACACGCAAC
CCCTTTCCGGCAGCTTCATTCCCTCCATGCTTTCCTCCTCCTTGTTATTC
TTCTCTATCTCATCAGTGTAATCCAGGCCTTTGTCATGATTCCTGCGACG
TGGCAGGCCCGGCAGCAGCAGCCATCACGCACTACCACTGCCCACGTCCG
GTCCGTTTTTGCCAGCAATGGGGAGATAGATAGCCAAGGCATCGACAAGG
CCATTATCAATGCAGTCATGGCAGCTGCTGAAAAGGAGCAAGCTCAATCA
CAGCCACAAAGCAAGGGGGATGGCAAGGCCAAGGACGACGACGGGCCGAG
TGGCCCCAGGGATTTTTACAGCGTGAATGCCGCAGACGAAGAACTCGCCG
AGGCACAAGAACGCTATGCTCAGGCCCGAGCGCGGCGTGAGCGCTTCTTA
ATGGAGGCACAGGCCAACTTTCGCCAAATGGCAGAGAAAGCTGATGAGGA
GTTGCAGGCGTTCGTGGACCAGGAGGAGGCGATGGCGCAAGCGCTGGAAC
TACGGGTGAAGGAAGTGAAAGAGGTGAAAGAGGAGGTCTCGGCGCTCGTC
AAGGAGGCAGACGAGCTGATGGGAGGAGGAAAGAAAATTATGGCTTTGTT
TGACGTGGTCTCAACATTGTCCTTTTTGGTGGTGCTGGACACGTTTTATG
TGAGCTATCTCGCCTACCGAGGTAGCGAGCTGTTAACCACGTCCTTAGCC
ACCGAGGTCATCTTGGGTGGGTTCTTGTTCTTTAAGATCAAGCAACGGGA
GACGGCCCTATTAGAAAAAGAAGGGAACAAGAGCACTAGCACAAACAGCA
AGAACATCAGCAATAATAATAGCAACAACAGCCAGCAACGGAGGATATGA
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Synonyms
Publications