NO06G00420, NO06G00420 (gene) Nannochloropsis oceanica

Overview
NameNO06G00420
Unique NameNO06G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2360
Alignment locationchr6:183124..185483 +

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Properties
Property NameValue
DescriptionActivating signal cointegrator 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:183124..185483 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018664DUF2103_metal-binding
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO06G00420 vs. NCBI_GenBank
Match: EWM26148.1 (activating signal cointegrator 1 [Nannochloropsis gaditana] >EWM26149.1 activating signal cointegrator 1 [Nannochloropsis gaditana])

HSP 1 Score: 152.5 bits (384), Expect = 4.600e-33
Identity = 129/251 (51.39%), Postives = 155/251 (61.75%), Query Frame = 0
Query:  432 PSIRLLATACGGALAPADSEPGGEGGRGMGGE---ALRDRLLMFDLTMAERTRVYDDQADYFPGSSAGNMAWMDEKEXXXXXXXXXXXXXXVMGRKGRVEVSIDLAGRRVLVEEEGGREGGREVRKGGLGKEENKVAEEVARLRREYSGRERIVKGKGAGEGRRGREGV---MCGASQLSGRAQQVFEGLHTHFSRVKAANEAKKEKKSRREGEEDEGGDVLP--------SRIQTEFDRLVDEGEEGEED 669
            P I L + A  G LA  +           G E    +RDRLL+FDL+MAERT+VYDDQADYFPG+S GNMAWMDEKE XXXXXXXXXXXXX  GR+G +E+SIDLAGRRV +++ G   G  E   G +G   N+ AEEVARL  E S         G  EG   REG      G S+LSGRA++VFEGLH HF R+K++N AK+ +K  R+G   EG D  P        SR+QT  DRL D+ E   ED
Sbjct:  285 PPILLRSLAARGKLAVENESKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTS-GNMAWMDEKECXXXXXXXXXXXXXXXGRRGPMELSIDLAGRRVFLQDSGIDTGKEESDAGRIG--TNEAAEEVARLAWELS-------TSGTLEGNYDREGARKGKSGVSRLSGRAREVFEGLHAHFGRIKSSNYAKEREK--RQG-HPEGEDAEPKAETFSSRSRVQTTSDRLHDDEEMEIED 522          
BLAST of NO06G00420 vs. NCBI_GenBank
Match: WP_024124554.1 (DUF2103 domain-containing protein [Thermosynechococcus sp. NK55a] >AHB88146.1 protein of unknown function DUF2103 [Thermosynechococcus sp. NK55a])

HSP 1 Score: 91.3 bits (225), Expect = 1.300e-14
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 0
Query:   40 TARLALNHSTHVEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGYKALARRGQTVQEVFITGSIGQAALQRALDAATSKE 136
            T R+ LNHSTH+EGL+PVL +L    G   I T+ PG +A  +GK+ H  +RVS P   G+K +ARRG+TVQEVF+   + +A L+ A+DA  + +
Sbjct:    5 TGRVVLNHSTHIEGLIPVLEKLAKVAG---IRTLTPGVIAPVKGKSPHLHLRVSVPIKGGFKVIARRGKTVQEVFVVTQLSEAELKAAIDAVLASK 97          
BLAST of NO06G00420 vs. NCBI_GenBank
Match: WP_011057100.1 (hypothetical protein [Thermosynechococcus elongatus] >NP_682050.1 hypothetical protein tlr1260 [Thermosynechococcus elongatus BP-1] >BAC08812.1 tlr1260 [Thermosynechococcus elongatus BP-1])

HSP 1 Score: 90.9 bits (224), Expect = 1.600e-14
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 0
Query:   40 TARLALNHSTHVEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGYKALARRGQTVQEVFITGSIGQAALQRALDAATSKE 136
            T R+ LNHSTH+EGL+PVL +L    G   I T+ PG +A  +GK+ H  +RVS P   G+K +ARRG+TVQEVF+   + +A L+ A+DA  + +
Sbjct:   10 TGRVVLNHSTHIEGLIPVLEKLAKVAG---ISTLTPGVIAPVKGKSPHLHLRVSVPIKGGFKVIARRGKTVQEVFVITQLSEAELKAAIDAVLASK 102          
BLAST of NO06G00420 vs. NCBI_GenBank
Match: BAY51018.1 (hypothetical protein NIES2134_114000 [Thermosynechococcus vulcanus NIES-2134])

HSP 1 Score: 90.9 bits (224), Expect = 1.600e-14
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 0
Query:   40 TARLALNHSTHVEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGYKALARRGQTVQEVFITGSIGQAALQRALDAATSKE 136
            T R+ LNHSTH+EGL+PVL +L    G   I T+ PG +A  +GK+ H  +RVS P   G+K +ARRG+TVQEVF+   + +A L+ A+DA  + +
Sbjct:    5 TGRVVLNHSTHIEGLIPVLEKLAKVAG---ISTLTPGVIAPVKGKSPHLHLRVSVPIKGGFKVIARRGKTVQEVFVITQLSEAELKAAIDAVLASK 97          
BLAST of NO06G00420 vs. NCBI_GenBank
Match: PSO51045.1 (metal-binding protein [Cyanobacteria bacterium SW_9_44_58])

HSP 1 Score: 89.0 bits (219), Expect = 6.200e-14
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   38 TATARLALNHSTHVEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGYKALARRGQTVQEVFITGSIGQAALQRALDAA 132
            ++  RL  NHSTH+EGL+P+L RLI   G   IYT+ PG ++  RG   H ++RVS P   GYK +AR G++VQEVFI   + Q  L+ ALD++
Sbjct:    4 SSQGRLVWNHSTHIEGLIPILERLITYQG---IYTVTPGVISRARGNCQHLKLRVSVPIRGGYKVIARHGKSVQEVFIITDLSQQELKSALDSS 94          
BLAST of NO06G00420 vs. NCBI_GenBank
Match: ATS18521.1 (hypothetical protein BRW62_06865 [Synechococcus lividus PCC 6715])

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-13
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 0
Query:   39 ATARLALNHSTHVEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGYKALARRGQTVQEVFITGSIGQAALQRAL 129
            AT R+ LNHSTH+EGL+PVL +L    G   I T+ PG +A  +GK+ H  +RVS P   G+K +ARRG+TVQEVF+   + +A L+ A+
Sbjct:    8 ATGRVVLNHSTHIEGLIPVLEKLAKVAG---ITTLTPGVIAPVKGKSPHLHLRVSVPIKGGFKVIARRGKTVQEVFVVTHLSEAELKGAI 94          
BLAST of NO06G00420 vs. NCBI_GenBank
Match: WP_106220058.1 (hypothetical protein [Aphanothece minutissima] >PSB38789.1 hypothetical protein C7B81_04350 [Aphanothece cf. minutissima CCALA 015])

HSP 1 Score: 87.4 bits (215), Expect = 1.800e-13
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 0
Query:   41 ARLALNHSTHVEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGYKALARRGQTVQEVFITGSIGQAALQRALDAATS 134
            ARL + HST+VEGL+P+LRRL ATL  PDI TI P  +   RG+++  R+RVS+P   G+K LARRG T QEVF+   + +  LQ  LD  TS
Sbjct:    2 ARLVITHSTYVEGLIPLLRRL-ATL--PDIDTITPAVITRVRGRSVGLRLRVSSPITGGHKLLARRGSTAQEVFVVTRLSRDQLQEELDRLTS 91          
BLAST of NO06G00420 vs. NCBI_GenBank
Match: WP_006527808.1 (metal-binding protein (DUF2103) [Gloeocapsa sp. PCC 73106] >ELR99377.1 putative metal-binding protein (DUF2103) [Gloeocapsa sp. PCC 73106])

HSP 1 Score: 86.3 bits (212), Expect = 4.000e-13
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0
Query:   37 PTATARLALNHSTHVEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGYKALARRGQTVQEVFITGSIGQAALQRALDAATSK 135
            P    RL  NHSTH+ GL+P+L +L      P + TI PG +   RG++ H R+RVS P   GYK +AR+G+TVQEVFI  ++ Q  ++ A+D   +K
Sbjct:    4 PVKGGRLVWNHSTHIPGLIPILEKL---TNYPGVETITPGVIGRARGQSPHLRLRVSVPIRGGYKIIARQGKTVQEVFIITTLSQTEIEEAIDGIVNK 98          
BLAST of NO06G00420 vs. NCBI_GenBank
Match: WP_096625065.1 (metal-binding protein [Calothrix sp. NIES-3974] >BAZ07782.1 hypothetical protein NIES3974_44470 [Calothrix sp. NIES-3974])

HSP 1 Score: 85.9 bits (211), Expect = 5.300e-13
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 0
Query:   39 ATARLALNHSTHVEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGYKALARRGQTVQEVFITGSIGQAALQRALDAATSK 135
            +T RL  NHSTH+ GL+P+L RL    G   IYTI PG +   +G + HF++R+S P   G+KA+AR G++VQEVFI   + Q  L+  +  A SK
Sbjct:    5 STGRLVWNHSTHIAGLIPILERLCQNEG---IYTITPGVLGRVKGHSPHFQLRISVPIRGGFKAIARHGKSVQEVFIVTDLDQEQLEAMIQVAVSK 97          
BLAST of NO06G00420 vs. NCBI_GenBank
Match: WP_036481715.1 (metal-binding protein [Myxosarcina sp. GI1])

HSP 1 Score: 84.7 bits (208), Expect = 1.200e-12
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 0
Query:   38 TATARLALNHSTHVEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGYKALARRGQTVQEVFITGSIGQAALQRAL 129
            ++  RL  NHSTH+ GL+P+L +L+   G   I T+ PGR+   RG++ H ++RVS P   GYK +AR+G+TVQEVFI   + Q AL++A+
Sbjct:    4 SSDGRLVWNHSTHLPGLIPILEKLVDCEG---IGTVTPGRIKTARGRSPHLKLRVSVPIRGGYKVIARQGKTVQEVFILTVLEQKALEKAI 91          
The following BLAST results are available for this feature:
BLAST of NO06G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26148.14.600e-3351.39activating signal cointegrator 1 [Nannochloropsis ... [more]
WP_024124554.11.300e-1446.88DUF2103 domain-containing protein [Thermosynechoco... [more]
WP_011057100.11.600e-1446.88hypothetical protein [Thermosynechococcus elongatu... [more]
BAY51018.11.600e-1446.88hypothetical protein NIES2134_114000 [Thermosynech... [more]
PSO51045.16.200e-1447.87metal-binding protein [Cyanobacteria bacterium SW_... [more]
ATS18521.11.100e-1348.89hypothetical protein BRW62_06865 [Synechococcus li... [more]
WP_106220058.11.800e-1352.69hypothetical protein [Aphanothece minutissima] >PS... [more]
WP_006527808.14.000e-1343.88metal-binding protein (DUF2103) [Gloeocapsa sp. PC... [more]
WP_096625065.15.300e-1345.83metal-binding protein [Calothrix sp. NIES-3974] >B... [more]
WP_036481715.11.200e-1246.15metal-binding protein [Myxosarcina sp. GI1][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000407NSK000407Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00420.1NO06G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g83gene4442Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00420.1NO06G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00420 ID=NO06G00420|Name=NO06G00420|organism=Nannochloropsis oceanica|type=gene|length=2360bp
ATGCTCCACTCTGTCTATTCCCTGCCCTTCCGTTCCATCGCCTTGGCTCT
CCGTCCGCTCCTCCTTCACCACTGCGTCCGATATATCAACCACATATCAT
CCCGAGCACCCACCGCTACCGCCCGCCTGGCGCTCAATCACTCCACGCAC
GTCGAAGGCCTGCTACCCGTGCTCCGCCGCTTGATTGCCACCCTCGGACC
ACCCGACATATACACTATCGTTCCGGGCCGAGTGGCCGTCACAAGGGGGA
AAGCCATCCATTTTCGCGTGCGTGTGAGCGCGCCCACGCCTCAAGGGTAC
AAGGCACTCGCGCGACGAGGACAGACGGTGCAGGAAGTCTTTATCACGGG
GTCCATCGGCCAGGCGGCATTGCAGCGGGCGTTGGACGCGGCAACATCGA
AGGAGCTCGGGGAGAGCGgtcagtagggaacagaggaggagagagagccc
agcatttcacaagAGGAGGGAGGACAGAGAAAGgtgcgtcgccagtgagc
tcatcctattttcctttcttcctttcattgttttcattgtcgctgccacg
ggccacatttgatattttggaaagcgaaggatgcactaaccctccctccc
tccccttctccctttctccctccctttcctccctccctcctttttcttcc
ccagATGGCGCCTCCTGCCACCCCCGAGCTGAAGCAATGGGTACAAACCG
CGATCGCAAGCACGTTGATGATGGACGTGAGTGAAGCCGAAGACCTAGCG
ACGTGTGTGGTGAGCATGCCGTGTGGGGGCAAGGCAGAGGAGGAGGAAAT
AAGGCAATTCTTAAGGGACTTTTTAGGGGCGTCGGAAAAAGTGGCTGGCT
TTGCAGATGAGCTGGTGAGAAGACGGAGGGAGGGAGGGAGAAGGAGTGGT
GGTGGTGGTGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGAAGAAGATGATGGGTGGCGGGGGGAGCAGCAGTGGTGTTTCAA
GTAAGAGTAGTAGTAGTAGTAGCAGCAGCAGTGGTGGTGGGCAGAAAGTG
CTGGAGGACAATTTCTGGGGAGCTGCTCCTCCTCGTGCATCTGCTGTTGC
TGGTGGTGGTGGTGGTGGTGGTGAGAATAGTGAAGAGCCACACGACGCCT
CAAAATCAACGAAAAAAAGGCAGCAGCAGGAGCAGCAGCAGGAGACACAA
GCACCACCGCCACCACGATCGAGTCTCTGGGACCCCTCGACGGCGTCGTT
CGTATCGAAATCGAACAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCGGCAGCAGCAGCAGGAGGAGCAAGGGTGGTAATGGTGGT
GATGGTGGTGGAGGAGGGGGAGGAGAGGAAATCAAAATAGGGGGCAGTAG
CAGCAGCGACCGAAGCCAGCAACAGCAACAGCTCTCTCAGTCCCCTCATC
CTCCTCTACCCCCCTCTAAACCCCCCCTCCCTCCCGCCCTGCCTGCGCCT
GCATGGGCTCCATCCATACGCCTCTTGGCAACTGCCTGCGGTgtgggaag
atagcctgcgcaagggagggatggagcacgtgcaccttttgcaaagccga
ccttacctccctctctgccgggtatcggtcccgccctccctccctccttc
gctccctcgctgccaagGGGGCCCTTGCCCCGGCGGACTCCGAGCCGGGA
GGGGAGGGAGGGAGGGGGATGGGAGGGGAGGCATTGAGGGATCGCTTGTT
AATGTTTGATTTGACCATGGCGGAGAGGACGAGGGTGTATGACGACCAGG
CAGATTATTTCCCGGGGTCATCCGCAGGAAACATGGCTTGGATGGACGAG
AAGGAGAGGGAGGAGGAGGAACGGAGGGAGGAGGAGAGGAGGGAGCGGGT
AATGGGGAGGAAAGGGCGGGTGGAGGTTTCGATTGATTTGGCGGGAAGAC
GAGTGTTGGTAGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTAAGG
AAGGGGGGGTTGGGTAAGGAGGAAAATAAGGTGGCGGAGGAGGTGGCAAG
GTTGAGGAGGGAGTATAGTGGTCGAGAAAGAATTGTCAAGGGGAAGGGAG
CGGGGGAGGGAAGGAGGGGGAGGGAAGGTGTGATGTGTGGAGCGTCACAA
TTGAGTGGACGGGCACAACAAGTGTTTGAAGGGCTACATACTCATTTTAG
TCGGGTCAAGGCCGCAAATGAGGCGAAGAAGGAGAAGAAGAGTAGGAGGG
AAGGGGAGGAGGACGAGGGAGGGGACGTGTTGCCCAGTCGAATTCAGACC
GAATTCGATCGCTTGGTAGACGAAGGGGAGGAAGGGGAGGAAGACGGTGG
AGTGGCTTAG
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protein sequence of NO06G00420.1

>NO06G00420.1-protein ID=NO06G00420.1-protein|Name=NO06G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp
MLHSVYSLPFRSIALALRPLLLHHCVRYINHISSRAPTATARLALNHSTH
VEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGY
KALARRGQTVQEVFITGSIGQAALQRALDAATSKELGESEEGGQRKMAPP
ATPELKQWVQTAIASTLMMDVSEAEDLATCVVSMPCGGKAEEEEIRQFLR
DFLGASEKVAGFADELVRRRREGGRRSGGGGGGGGGGGGGGGGGGGGKKM
MGGGGSSSGVSSKSSSSSSSSSGGGQKVLEDNFWGAAPPRASAVAGGGGG
GGENSEEPHDASKSTKKRQQQEQQQETQAPPPPRSSLWDPSTASFVSKSN
RSSSSSSSSSSSSSSGSSSRRSKGGNGGDGGGGGGGEEIKIGGSSSSDRS
QQQQQLSQSPHPPLPPSKPPLPPALPAPAWAPSIRLLATACGGALAPADS
EPGGEGGRGMGGEALRDRLLMFDLTMAERTRVYDDQADYFPGSSAGNMAW
MDEKEREEEERREEERRERVMGRKGRVEVSIDLAGRRVLVEEEGGREGGR
EVRKGGLGKEENKVAEEVARLRREYSGRERIVKGKGAGEGRRGREGVMCG
ASQLSGRAQQVFEGLHTHFSRVKAANEAKKEKKSRREGEEDEGGDVLPSR
IQTEFDRLVDEGEEGEEDGGVA*
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Synonyms
Publications