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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:183124..185483 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00420.1 vs.
Match: EWM26148.1 (activating signal cointegrator 1 [Nannochloropsis gaditana]; EWM26149.1 activating signal cointegrator 1 [Nannochloropsis gaditana]) HSP 1 Score: 171.8 bits (434), Expect = 7.300e-39 Identity = 128/251 (51.00%), Postives = 155/251 (61.75%), Query Frame = 0
Query: 432 PSIRLLATACGGALAPADSEPGGEGGRGMGGEA---LRDRLLMFDLTMAERTRVYDDQADYFPGSSAGNMAWMDEKEREEEERREEERRERVMGRKGRVEVSIDLAGRRVLVEEEGGREGGREVRKGGLGKEENKVAEEVARLRREYSGRERIVKGKGAGEGRRGREGV---MCGASQLSGRAQQVFEGLHTHFSRVKAANEAKKEKKSRREGEEDEGGDVLP--------SRIQTEFDRLVDEGEEGEED 669
P I L + A G LA + G E +RDRLL+FDL+MAERT+VYDDQADYFPG+S GNMAWMDEKE EEEERREEERRE+ GR+G +E+SIDLAGRRV +++ G G E G +G N+ AEEVARL E S G EG REG G S+LSGRA++VFEGLH HF R+K++N AK+ +K R+G EG D P SR+QT DRL D+ E ED
Sbjct: 285 PPILLRSLAARGKLAVENESKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTS-GNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGIDTGKEESDAGRIG--TNEAAEEVARLAWELS-------TSGTLEGNYDREGARKGKSGVSRLSGRAREVFEGLHAHFGRIKSSNYAKEREK--RQG-HPEGEDAEPKAETFSSRSRVQTTSDRLHDDEEMEIED 522
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00420.1 ID=NO06G00420.1|Name=NO06G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2019bp
ATGCTCCACTCTGTCTATTCCCTGCCCTTCCGTTCCATCGCCTTGGCTCT
CCGTCCGCTCCTCCTTCACCACTGCGTCCGATATATCAACCACATATCAT
CCCGAGCACCCACCGCTACCGCCCGCCTGGCGCTCAATCACTCCACGCAC
GTCGAAGGCCTGCTACCCGTGCTCCGCCGCTTGATTGCCACCCTCGGACC
ACCCGACATATACACTATCGTTCCGGGCCGAGTGGCCGTCACAAGGGGGA
AAGCCATCCATTTTCGCGTGCGTGTGAGCGCGCCCACGCCTCAAGGGTAC
AAGGCACTCGCGCGACGAGGACAGACGGTGCAGGAAGTCTTTATCACGGG
GTCCATCGGCCAGGCGGCATTGCAGCGGGCGTTGGACGCGGCAACATCGA
AGGAGCTCGGGGAGAGCGAGGAGGGAGGACAGAGAAAGATGGCGCCTCCT
GCCACCCCCGAGCTGAAGCAATGGGTACAAACCGCGATCGCAAGCACGTT
GATGATGGACGTGAGTGAAGCCGAAGACCTAGCGACGTGTGTGGTGAGCA
TGCCGTGTGGGGGCAAGGCAGAGGAGGAGGAAATAAGGCAATTCTTAAGG
GACTTTTTAGGGGCGTCGGAAAAAGTGGCTGGCTTTGCAGATGAGCTGGT
GAGAAGACGGAGGGAGGGAGGGAGAAGGAGTGGTGGTGGTGGTGGAGGGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAGAAGATG
ATGGGTGGCGGGGGGAGCAGCAGTGGTGTTTCAAGTAAGAGTAGTAGTAG
TAGTAGCAGCAGCAGTGGTGGTGGGCAGAAAGTGCTGGAGGACAATTTCT
GGGGAGCTGCTCCTCCTCGTGCATCTGCTGTTGCTGGTGGTGGTGGTGGT
GGTGGTGAGAATAGTGAAGAGCCACACGACGCCTCAAAATCAACGAAAAA
AAGGCAGCAGCAGGAGCAGCAGCAGGAGACACAAGCACCACCGCCACCAC
GATCGAGTCTCTGGGACCCCTCGACGGCGTCGTTCGTATCGAAATCGAAC
AGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAG
CAGCAGCAGGAGGAGCAAGGGTGGTAATGGTGGTGATGGTGGTGGAGGAG
GGGGAGGAGAGGAAATCAAAATAGGGGGCAGTAGCAGCAGCGACCGAAGC
CAGCAACAGCAACAGCTCTCTCAGTCCCCTCATCCTCCTCTACCCCCCTC
TAAACCCCCCCTCCCTCCCGCCCTGCCTGCGCCTGCATGGGCTCCATCCA
TACGCCTCTTGGCAACTGCCTGCGGTGGGGCCCTTGCCCCGGCGGACTCC
GAGCCGGGAGGGGAGGGAGGGAGGGGGATGGGAGGGGAGGCATTGAGGGA
TCGCTTGTTAATGTTTGATTTGACCATGGCGGAGAGGACGAGGGTGTATG
ACGACCAGGCAGATTATTTCCCGGGGTCATCCGCAGGAAACATGGCTTGG
ATGGACGAGAAGGAGAGGGAGGAGGAGGAACGGAGGGAGGAGGAGAGGAG
GGAGCGGGTAATGGGGAGGAAAGGGCGGGTGGAGGTTTCGATTGATTTGG
CGGGAAGACGAGTGTTGGTAGAGGAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGTAAGGAAGGGGGGGTTGGGTAAGGAGGAAAATAAGGTGGCGGAGGA
GGTGGCAAGGTTGAGGAGGGAGTATAGTGGTCGAGAAAGAATTGTCAAGG
GGAAGGGAGCGGGGGAGGGAAGGAGGGGGAGGGAAGGTGTGATGTGTGGA
GCGTCACAATTGAGTGGACGGGCACAACAAGTGTTTGAAGGGCTACATAC
TCATTTTAGTCGGGTCAAGGCCGCAAATGAGGCGAAGAAGGAGAAGAAGA
GTAGGAGGGAAGGGGAGGAGGACGAGGGAGGGGACGTGTTGCCCAGTCGA
ATTCAGACCGAATTCGATCGCTTGGTAGACGAAGGGGAGGAAGGGGAGGA
AGACGGTGGAGTGGCTTAG back to topprotein sequence of NO06G00420.1 >NO06G00420.1-protein ID=NO06G00420.1-protein|Name=NO06G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp
MLHSVYSLPFRSIALALRPLLLHHCVRYINHISSRAPTATARLALNHSTH
VEGLLPVLRRLIATLGPPDIYTIVPGRVAVTRGKAIHFRVRVSAPTPQGY
KALARRGQTVQEVFITGSIGQAALQRALDAATSKELGESEEGGQRKMAPP
ATPELKQWVQTAIASTLMMDVSEAEDLATCVVSMPCGGKAEEEEIRQFLR
DFLGASEKVAGFADELVRRRREGGRRSGGGGGGGGGGGGGGGGGGGGKKM
MGGGGSSSGVSSKSSSSSSSSSGGGQKVLEDNFWGAAPPRASAVAGGGGG
GGENSEEPHDASKSTKKRQQQEQQQETQAPPPPRSSLWDPSTASFVSKSN
RSSSSSSSSSSSSSSGSSSRRSKGGNGGDGGGGGGGEEIKIGGSSSSDRS
QQQQQLSQSPHPPLPPSKPPLPPALPAPAWAPSIRLLATACGGALAPADS
EPGGEGGRGMGGEALRDRLLMFDLTMAERTRVYDDQADYFPGSSAGNMAW
MDEKEREEEERREEERRERVMGRKGRVEVSIDLAGRRVLVEEEGGREGGR
EVRKGGLGKEENKVAEEVARLRREYSGRERIVKGKGAGEGRRGREGVMCG
ASQLSGRAQQVFEGLHTHFSRVKAANEAKKEKKSRREGEEDEGGDVLPSR
IQTEFDRLVDEGEEGEEDGGVA* back to topmRNA from alignment at chr6:183124..185483+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00420.1 ID=NO06G00420.1|Name=NO06G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2360bp|location=Sequence derived from alignment at chr6:183124..185483+ (Nannochloropsis oceanica)
ATGCTCCACTCTGTCTATTCCCTGCCCTTCCGTTCCATCGCCTTGGCTCT
CCGTCCGCTCCTCCTTCACCACTGCGTCCGATATATCAACCACATATCAT
CCCGAGCACCCACCGCTACCGCCCGCCTGGCGCTCAATCACTCCACGCAC
GTCGAAGGCCTGCTACCCGTGCTCCGCCGCTTGATTGCCACCCTCGGACC
ACCCGACATATACACTATCGTTCCGGGCCGAGTGGCCGTCACAAGGGGGA
AAGCCATCCATTTTCGCGTGCGTGTGAGCGCGCCCACGCCTCAAGGGTAC
AAGGCACTCGCGCGACGAGGACAGACGGTGCAGGAAGTCTTTATCACGGG
GTCCATCGGCCAGGCGGCATTGCAGCGGGCGTTGGACGCGGCAACATCGA
AGGAGCTCGGGGAGAGCGGTCAGTAGGGAACAGAGGAGGAGAGAGAGCCC
AGCATTTCACAAGAGGAGGGAGGACAGAGAAAGGTGCGTCGCCAGTGAGC
TCATCCTATTTTCCTTTCTTCCTTTCATTGTTTTCATTGTCGCTGCCACG
GGCCACATTTGATATTTTGGAAAGCGAAGGATGCACTAACCCTCCCTCCC
TCCCCTTCTCCCTTTCTCCCTCCCTTTCCTCCCTCCCTCCTTTTTCTTCC
CCAGATGGCGCCTCCTGCCACCCCCGAGCTGAAGCAATGGGTACAAACCG
CGATCGCAAGCACGTTGATGATGGACGTGAGTGAAGCCGAAGACCTAGCG
ACGTGTGTGGTGAGCATGCCGTGTGGGGGCAAGGCAGAGGAGGAGGAAAT
AAGGCAATTCTTAAGGGACTTTTTAGGGGCGTCGGAAAAAGTGGCTGGCT
TTGCAGATGAGCTGGTGAGAAGACGGAGGGAGGGAGGGAGAAGGAGTGGT
GGTGGTGGTGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGAAGAAGATGATGGGTGGCGGGGGGAGCAGCAGTGGTGTTTCAA
GTAAGAGTAGTAGTAGTAGTAGCAGCAGCAGTGGTGGTGGGCAGAAAGTG
CTGGAGGACAATTTCTGGGGAGCTGCTCCTCCTCGTGCATCTGCTGTTGC
TGGTGGTGGTGGTGGTGGTGGTGAGAATAGTGAAGAGCCACACGACGCCT
CAAAATCAACGAAAAAAAGGCAGCAGCAGGAGCAGCAGCAGGAGACACAA
GCACCACCGCCACCACGATCGAGTCTCTGGGACCCCTCGACGGCGTCGTT
CGTATCGAAATCGAACAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCGGCAGCAGCAGCAGGAGGAGCAAGGGTGGTAATGGTGGT
GATGGTGGTGGAGGAGGGGGAGGAGAGGAAATCAAAATAGGGGGCAGTAG
CAGCAGCGACCGAAGCCAGCAACAGCAACAGCTCTCTCAGTCCCCTCATC
CTCCTCTACCCCCCTCTAAACCCCCCCTCCCTCCCGCCCTGCCTGCGCCT
GCATGGGCTCCATCCATACGCCTCTTGGCAACTGCCTGCGGTGTGGGAAG
ATAGCCTGCGCAAGGGAGGGATGGAGCACGTGCACCTTTTGCAAAGCCGA
CCTTACCTCCCTCTCTGCCGGGTATCGGTCCCGCCCTCCCTCCCTCCTTC
GCTCCCTCGCTGCCAAGGGGGCCCTTGCCCCGGCGGACTCCGAGCCGGGA
GGGGAGGGAGGGAGGGGGATGGGAGGGGAGGCATTGAGGGATCGCTTGTT
AATGTTTGATTTGACCATGGCGGAGAGGACGAGGGTGTATGACGACCAGG
CAGATTATTTCCCGGGGTCATCCGCAGGAAACATGGCTTGGATGGACGAG
AAGGAGAGGGAGGAGGAGGAACGGAGGGAGGAGGAGAGGAGGGAGCGGGT
AATGGGGAGGAAAGGGCGGGTGGAGGTTTCGATTGATTTGGCGGGAAGAC
GAGTGTTGGTAGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTAAGG
AAGGGGGGGTTGGGTAAGGAGGAAAATAAGGTGGCGGAGGAGGTGGCAAG
GTTGAGGAGGGAGTATAGTGGTCGAGAAAGAATTGTCAAGGGGAAGGGAG
CGGGGGAGGGAAGGAGGGGGAGGGAAGGTGTGATGTGTGGAGCGTCACAA
TTGAGTGGACGGGCACAACAAGTGTTTGAAGGGCTACATACTCATTTTAG
TCGGGTCAAGGCCGCAAATGAGGCGAAGAAGGAGAAGAAGAGTAGGAGGG
AAGGGGAGGAGGACGAGGGAGGGGACGTGTTGCCCAGTCGAATTCAGACC
GAATTCGATCGCTTGGTAGACGAAGGGGAGGAAGGGGAGGAAGACGGTGG
AGTGGCTTAG back to topCoding sequence (CDS) from alignment at chr6:183124..185483+ >NO06G00420.1 ID=NO06G00420.1|Name=NO06G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=2019bp|location=Sequence derived from alignment at chr6:183124..185483+ (Nannochloropsis oceanica)
ATGCTCCACTCTGTCTATTCCCTGCCCTTCCGTTCCATCGCCTTGGCTCT
CCGTCCGCTCCTCCTTCACCACTGCGTCCGATATATCAACCACATATCAT
CCCGAGCACCCACCGCTACCGCCCGCCTGGCGCTCAATCACTCCACGCAC
GTCGAAGGCCTGCTACCCGTGCTCCGCCGCTTGATTGCCACCCTCGGACC
ACCCGACATATACACTATCGTTCCGGGCCGAGTGGCCGTCACAAGGGGGA
AAGCCATCCATTTTCGCGTGCGTGTGAGCGCGCCCACGCCTCAAGGGTAC
AAGGCACTCGCGCGACGAGGACAGACGGTGCAGGAAGTCTTTATCACGGG
GTCCATCGGCCAGGCGGCATTGCAGCGGGCGTTGGACGCGGCAACATCGA
AGGAGCTCGGGGAGAGCGAGGAGGGAGGACAGAGAAAGATGGCGCCTCCT
GCCACCCCCGAGCTGAAGCAATGGGTACAAACCGCGATCGCAAGCACGTT
GATGATGGACGTGAGTGAAGCCGAAGACCTAGCGACGTGTGTGGTGAGCA
TGCCGTGTGGGGGCAAGGCAGAGGAGGAGGAAATAAGGCAATTCTTAAGG
GACTTTTTAGGGGCGTCGGAAAAAGTGGCTGGCTTTGCAGATGAGCTGGT
GAGAAGACGGAGGGAGGGAGGGAGAAGGAGTGGTGGTGGTGGTGGAGGGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAGAAGATG
ATGGGTGGCGGGGGGAGCAGCAGTGGTGTTTCAAGTAAGAGTAGTAGTAG
TAGTAGCAGCAGCAGTGGTGGTGGGCAGAAAGTGCTGGAGGACAATTTCT
GGGGAGCTGCTCCTCCTCGTGCATCTGCTGTTGCTGGTGGTGGTGGTGGT
GGTGGTGAGAATAGTGAAGAGCCACACGACGCCTCAAAATCAACGAAAAA
AAGGCAGCAGCAGGAGCAGCAGCAGGAGACACAAGCACCACCGCCACCAC
GATCGAGTCTCTGGGACCCCTCGACGGCGTCGTTCGTATCGAAATCGAAC
AGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAG
CAGCAGCAGGAGGAGCAAGGGTGGTAATGGTGGTGATGGTGGTGGAGGAG
GGGGAGGAGAGGAAATCAAAATAGGGGGCAGTAGCAGCAGCGACCGAAGC
CAGCAACAGCAACAGCTCTCTCAGTCCCCTCATCCTCCTCTACCCCCCTC
TAAACCCCCCCTCCCTCCCGCCCTGCCTGCGCCTGCATGGGCTCCATCCA
TACGCCTCTTGGCAACTGCCTGCGGTGGGGCCCTTGCCCCGGCGGACTCC
GAGCCGGGAGGGGAGGGAGGGAGGGGGATGGGAGGGGAGGCATTGAGGGA
TCGCTTGTTAATGTTTGATTTGACCATGGCGGAGAGGACGAGGGTGTATG
ACGACCAGGCAGATTATTTCCCGGGGTCATCCGCAGGAAACATGGCTTGG
ATGGACGAGAAGGAGAGGGAGGAGGAGGAACGGAGGGAGGAGGAGAGGAG
GGAGCGGGTAATGGGGAGGAAAGGGCGGGTGGAGGTTTCGATTGATTTGG
CGGGAAGACGAGTGTTGGTAGAGGAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGTAAGGAAGGGGGGGTTGGGTAAGGAGGAAAATAAGGTGGCGGAGGA
GGTGGCAAGGTTGAGGAGGGAGTATAGTGGTCGAGAAAGAATTGTCAAGG
GGAAGGGAGCGGGGGAGGGAAGGAGGGGGAGGGAAGGTGTGATGTGTGGA
GCGTCACAATTGAGTGGACGGGCACAACAAGTGTTTGAAGGGCTACATAC
TCATTTTAGTCGGGTCAAGGCCGCAAATGAGGCGAAGAAGGAGAAGAAGA
GTAGGAGGGAAGGGGAGGAGGACGAGGGAGGGGACGTGTTGCCCAGTCGA
ATTCAGACCGAATTCGATCGCTTGGTAGACGAAGGGGAGGAAGGGGAGGA
AGACGGTGGAGTGGCTTAG back to top
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