NO06G00280, NO06G00280 (gene) Nannochloropsis oceanica

Overview
NameNO06G00280
Unique NameNO06G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length633
Alignment locationchr6:121323..121955 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:121323..121955 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G00280 vs. NCBI_GenBank
Match: EWM30045.1 (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 120.9 bits (302), Expect = 4.600e-24
Identity = 77/193 (39.90%), Postives = 114/193 (59.07%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEFENTLSSPLIAAFGIE---GADEISDINYKCTE--KVGTRATKFLCTPG 189
            MRR LSL+ALGVTL +TA +      L ++K  + ++  +DQWS+KG L++P  N + A G  GLT  L + + D ++ T F A +C+LL N +GV CK  GAR+S+KRT+R PK A +   ++ N+ +   YY  SG+FRR +F   L  P++    ++   G+  +  I   C+E  K   R TK  CTPG
Sbjct:    1 MRRILSLLALGVTLVMTAGQ---EFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRR-PKGAKV---KSSNSNSTGGYYGASGMFRRLQF---LQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPG 183          
BLAST of NO06G00280 vs. NCBI_GenBank
Match: EWM22002.1 (hypothetical protein Naga_100353g5 [Nannochloropsis gaditana])

HSP 1 Score: 117.1 bits (292), Expect = 6.700e-23
Identity = 78/189 (41.27%), Postives = 105/189 (55.56%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTEKVGTRATKFLCTPG 189
            MRR LSL+ALG+TLALT   T   L L SIK  + T+ NKD+WS+K +L DP    +   G +GLT  L +  +DT+    F A DC +  N KG  CK+ GAR+S+ R  + PK     V ++ N+T    YY VSG FRR +  E+ +  PL A   + G   +S     C+ K GT+  K  C PG
Sbjct:   80 MRRGLSLLALGLTLALT---TGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSI-RASKPPKG----VGKSHNST--GGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVPG 257          
BLAST of NO06G00280 vs. NCBI_GenBank
Match: EWM22004.1 (hypothetical protein Naga_100353g6 [Nannochloropsis gaditana])

HSP 1 Score: 117.1 bits (292), Expect = 6.700e-23
Identity = 78/189 (41.27%), Postives = 105/189 (55.56%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTEKVGTRATKFLCTPG 189
            MRR LSL+ALG+TLALT   T   L L SIK  + T+ NKD+WS+K +L DP    +   G +GLT  L +  +DT+    F A DC +  N KG  CK+ GAR+S+ R  + PK     V ++ N+T    YY VSG FRR +  E+ +  PL A   + G   +S     C+ K GT+  K  C PG
Sbjct:   11 MRRGLSLLALGLTLALT---TGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSI-RASKPPKG----VGKSHNST--GGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVPG 188          
BLAST of NO06G00280 vs. NCBI_GenBank
Match: EWM22005.1 (hypothetical protein Naga_100353g3 [Nannochloropsis gaditana])

HSP 1 Score: 115.2 bits (287), Expect = 2.500e-22
Identity = 75/189 (39.68%), Postives = 102/189 (53.97%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTEKVGTRATKFLCTPG 189
            MRR LSL+ALG+TLALT   T   L L SIK  + TR NKD+WS+KG L DP    +   G +GLT  L +  +DT+    F A DC +  N KG  CK+ GAR+S+ R  + PK   +     +   +   YY VSG FR  +  E+ + SPL A   ++G   +S     C+ + G   T+  C PG
Sbjct:   68 MRRGLSLLALGLTLALT---TGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSI-RASKPPKGVKV-----KTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVR-GAGTTRTTCVPG 246          
BLAST of NO06G00280 vs. NCBI_GenBank
Match: XP_005852576.1 (hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526] >EKU23255.1 hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.4 bits (285), Expect = 4.300e-22
Identity = 77/189 (40.74%), Postives = 104/189 (55.03%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTEKVGTRATKFLCTPG 189
            MRR LSL+ALG+TLALT   T   L L SIK  + T+ NKD+WS+KG+L DP    +   G  GLT  L +   DT+    F A DC +  + KG  CK+ GAR+S+ R  + PK     V ++ N+T    Y+ VSG FRR +  E+ +  PL A   + G   +S     C+ K GT+  K  C PG
Sbjct:    1 MRRGLSLLALGLTLALT---TGQMLSLKSIKTFERTQMNKDKWSMKGHLEDPTLAVVSGIGTNGLTVTLLDMAADTLDTASFAAGDCMVRKSSKGARCKMMGARVSI-RASKPPKG----VGKSHNST--GGYFSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVPG 178          
BLAST of NO06G00280 vs. NCBI_GenBank
Match: EWM30036.1 (hypothetical protein Naga_100179g1 [Nannochloropsis gaditana])

HSP 1 Score: 114.0 bits (284), Expect = 5.700e-22
Identity = 73/192 (38.02%), Postives = 107/192 (55.73%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGAD-EISDINYKCTEKV--GTRATKFLCTPG 189
            MRRA  L+ALG+TL +TA +   T  L ++K +D ++  +DQWS+KG L+DP    +   G  GLT  L +    T+  T F A DC+L  N +GV CK  GAR+S+K ++R PK A ++   N N  +   YY  SG+FRR +F ++ +  PL     +       S +   C+EK+    R T+  CTPG
Sbjct:   20 MRRAFFLLALGITLVMTAGQDLFT--LKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRR-PKGAYVQ---NSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPG 205          
BLAST of NO06G00280 vs. NCBI_GenBank
Match: XP_005855033.1 (hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526] >EKU21331.1 hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 113.6 bits (283), Expect = 7.400e-22
Identity = 73/192 (38.02%), Postives = 107/192 (55.73%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGAD-EISDINYKCTEKV--GTRATKFLCTPG 189
            MRRA  L+ALG+TL +TA +   T  L ++K +D ++  +DQWS+KG L+DP    +   G  GLT  L +    T+  T F A DC+L  N +GV CK  GAR+S+K ++R PK A ++   N N  +   YY  SG+FRR +F ++ +  PL     +       S +   C+EK+    R T+  CTPG
Sbjct:    1 MRRAFFLLALGITLVMTAGQDLFT--LKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRR-PKGANVQ---NSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPG 186          
BLAST of NO06G00280 vs. NCBI_GenBank
Match: EWM20521.1 (hypothetical protein Naga_100335g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 112.5 bits (280), Expect = 1.600e-21
Identity = 76/192 (39.58%), Postives = 106/192 (55.21%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPG 189
            MR  LSL+ALG+TL  T   TA   L L SI+AVD +  NKD W +KG +NDP    + A G TGLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+KR++R PK    +    ++  +   YY V+G FR   F EN + SPL AA  + G+  +SD    C +  +   R+T   C PG
Sbjct:    1 MRSPLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGNINDPSLTFVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRAACKIRGARVSIKRSRR-PKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRVNGS-VLSDTLISCYDLARKSARSTISQCEPG 190          
BLAST of NO06G00280 vs. NCBI_GenBank
Match: EWM20105.1 (hypothetical protein Naga_101776g1 [Nannochloropsis gaditana])

HSP 1 Score: 110.9 bits (276), Expect = 4.800e-21
Identity = 69/178 (38.76%), Postives = 107/178 (60.11%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEFENTLSSPLIAAFGIE---GADEISDINYKCTEK 176
            MRR LSL+ALGVTL +TA +      L ++K  + ++  +DQWS+KG L++P  N + A G  GLT  L + + D ++ T F A +C+LL N +GV CK  GAR+S+KRT+R PK A +   ++ N+ +   YY  SG+FRR +F   L  P++    ++   G+  +  I   C+E+
Sbjct:   37 MRRILSLLALGVTLVMTAGQ---EFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVSCKKMGARVSIKRTRR-PKGAKV---KSSNSNSTGGYYGASGMFRRLQF---LQDPVVTPVTVQVKVGSTTLPAIVSTCSER 204          
BLAST of NO06G00280 vs. NCBI_GenBank
Match: EWM20135.1 (hypothetical protein Naga_101626g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 106.3 bits (264), Expect = 1.200e-19
Identity = 71/190 (37.37%), Postives = 107/190 (56.32%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTP 188
            MR  LSL+ALG+TL +TA +      L +IK     +  +DQWS+KG L++P  N +   G +GLT  L + +   ++   F A +C+LL N +GV CK  GAR+ +KRT+R PK A +   ++ +  +   YY  SG+FRR +F ++T+ +PL     + G   +  I   C+E  K   R TK  CTP
Sbjct:    1 MRCILSLLALGITLVMTAGQ---EFTLKNIKVAGRFKTARDQWSMKGNLDNPTMNVVPVIGQSGLTVNLLDASLSPLASAAFAATNCKLLRNARGVSCKSMGARVYIKRTRR-PKAAKV---KSSSYNSTGGYYAASGMFRRLQFLQDTVVTPLTVQL-VVGTTTLPAIVSTCSERTKSAGRITKITCTP 182          
The following BLAST results are available for this feature:
BLAST of NO06G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 17
Match NameE-valueIdentityDescription
EWM30045.14.600e-2439.90hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
EWM22002.16.700e-2341.27hypothetical protein Naga_100353g5 [Nannochloropsi... [more]
EWM22004.16.700e-2341.27hypothetical protein Naga_100353g6 [Nannochloropsi... [more]
EWM22005.12.500e-2239.68hypothetical protein Naga_100353g3 [Nannochloropsi... [more]
XP_005852576.14.300e-2240.74hypothetical protein NGA_0721300 [Nannochloropsis ... [more]
EWM30036.15.700e-2238.02hypothetical protein Naga_100179g1 [Nannochloropsi... [more]
XP_005855033.17.400e-2238.02hypothetical protein NGA_0415500 [Nannochloropsis ... [more]
EWM20521.11.600e-2139.58hypothetical protein Naga_100335g8, partial [Nanno... [more]
EWM20105.14.800e-2138.76hypothetical protein Naga_101776g1 [Nannochloropsi... [more]
EWM20135.11.200e-1937.37hypothetical protein Naga_101626g1, partial [Nanno... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00280.1NO06G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00280.1NO06G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00280 ID=NO06G00280|Name=NO06G00280|organism=Nannochloropsis oceanica|type=gene|length=633bp
ATGCGTCGCGCTCTTTCTCTGGTTGCCCTTGGCGTCACACTCGCCCTCAC
GGCGGCTGAGACTGCGCCGACGTTGATTCTTACCTCCATCAAGGCAGTTG
ACACGACCAGGGCAAACAAGGACCAATGGAGTGTCAAGGGCTACCTCAAC
GACCCTGATGGGAATGCTATCCTGGCCTTTGGTGACACTGGCTTGACCGC
GCTGCTTGCAAACGGGAACGAAGACACAGTGAGTGAAACGGACTTTGACG
CGGATGATTGCAGACTGCTCAACAACGATAAGGGAGTCATTTGCAAGGTA
ACGGGCGCCCGCCTCTCGCTCAAGAGGACTAAGAGAGTACCCAAGGACGC
CATGCTGGAGGTGCAGAGGAACCGCAACACGACCACCGCCTCTTCCTACT
ACAGGGTTTCGGGTGTTTTCCGCCGTCAGGAGTTCGAAAACACTCTTTCG
TCGCCTCTGATTGCTGCCTTCGGCATTGAAGGCGCAGATGAGATCTCTGA
TATCAATTATAAGTGCACTGAGAAAGTAGGAACCAGGGCCACCAAGTTTC
TCTGCACGCCTGGCACTGCCCCGCCTACTGCTGCCCCTACTGCTACCCCT
ACTGCTGCCCCTACTGCTGCCCCTTCTGTCTAG
back to top

protein sequence of NO06G00280.1

>NO06G00280.1-protein ID=NO06G00280.1-protein|Name=NO06G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLN
DPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKV
TGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEFENTLS
SPLIAAFGIEGADEISDINYKCTEKVGTRATKFLCTPGTAPPTAAPTATP
TAAPTAAPSV*
back to top
Synonyms
Publications