NO06G00280.1, NO06G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00280.1
Unique NameNO06G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length633
Alignment locationchr6:121323..121955 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:121323..121955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00280.1 vs.
Match: EWM30045.1 (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 128.3 bits (321), Expect = 2.900e-26
Identity = 84/203 (41.38%), Postives = 121/203 (59.61%), Query Frame = 0 
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEFENTLSSPLIAAFGIE---GADEISDINYKCTE--KVGTRATKFLCTPGTAPPTAAPTA 199
            MRR LSL+ALGVTL +TA +      L ++K  + ++  +DQWS+KG L++P  N + A G  GLT  L + + D ++ T F A +C+LL N +GV CK  GAR+S+KRT+R PK A +   ++ N+ +   YY  SG+FRR +F   L  P++    ++   G+  +  I   C+E  K   R TK  CTPG AP T APTA
Sbjct:    1 MRRILSLLALGVTLVMTAGQE---FTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRR-PKGAKV---KSSNSNSTGGYYGASGMFRRLQF---LQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTA 193
The following BLAST results are available for this feature:
BLAST of NO06G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30045.12.900e-2641.38hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00280NO06G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00280.1NO06G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00280.1.cds1NO06G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00280.1 ID=NO06G00280.1|Name=NO06G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=633bp
ATGCGTCGCGCTCTTTCTCTGGTTGCCCTTGGCGTCACACTCGCCCTCAC
GGCGGCTGAGACTGCGCCGACGTTGATTCTTACCTCCATCAAGGCAGTTG
ACACGACCAGGGCAAACAAGGACCAATGGAGTGTCAAGGGCTACCTCAAC
GACCCTGATGGGAATGCTATCCTGGCCTTTGGTGACACTGGCTTGACCGC
GCTGCTTGCAAACGGGAACGAAGACACAGTGAGTGAAACGGACTTTGACG
CGGATGATTGCAGACTGCTCAACAACGATAAGGGAGTCATTTGCAAGGTA
ACGGGCGCCCGCCTCTCGCTCAAGAGGACTAAGAGAGTACCCAAGGACGC
CATGCTGGAGGTGCAGAGGAACCGCAACACGACCACCGCCTCTTCCTACT
ACAGGGTTTCGGGTGTTTTCCGCCGTCAGGAGTTCGAAAACACTCTTTCG
TCGCCTCTGATTGCTGCCTTCGGCATTGAAGGCGCAGATGAGATCTCTGA
TATCAATTATAAGTGCACTGAGAAAGTAGGAACCAGGGCCACCAAGTTTC
TCTGCACGCCTGGCACTGCCCCGCCTACTGCTGCCCCTACTGCTACCCCT
ACTGCTGCCCCTACTGCTGCCCCTTCTGTCTAG
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protein sequence of NO06G00280.1

>NO06G00280.1-protein ID=NO06G00280.1-protein|Name=NO06G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLN
DPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKV
TGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEFENTLS
SPLIAAFGIEGADEISDINYKCTEKVGTRATKFLCTPGTAPPTAAPTATP
TAAPTAAPSV*
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mRNA from alignment at chr6:121323..121955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00280.1 ID=NO06G00280.1|Name=NO06G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=633bp|location=Sequence derived from alignment at chr6:121323..121955+ (Nannochloropsis oceanica)
ATGCGTCGCGCTCTTTCTCTGGTTGCCCTTGGCGTCACACTCGCCCTCAC
GGCGGCTGAGACTGCGCCGACGTTGATTCTTACCTCCATCAAGGCAGTTG
ACACGACCAGGGCAAACAAGGACCAATGGAGTGTCAAGGGCTACCTCAAC
GACCCTGATGGGAATGCTATCCTGGCCTTTGGTGACACTGGCTTGACCGC
GCTGCTTGCAAACGGGAACGAAGACACAGTGAGTGAAACGGACTTTGACG
CGGATGATTGCAGACTGCTCAACAACGATAAGGGAGTCATTTGCAAGGTA
ACGGGCGCCCGCCTCTCGCTCAAGAGGACTAAGAGAGTACCCAAGGACGC
CATGCTGGAGGTGCAGAGGAACCGCAACACGACCACCGCCTCTTCCTACT
ACAGGGTTTCGGGTGTTTTCCGCCGTCAGGAGTTCGAAAACACTCTTTCG
TCGCCTCTGATTGCTGCCTTCGGCATTGAAGGCGCAGATGAGATCTCTGA
TATCAATTATAAGTGCACTGAGAAAGTAGGAACCAGGGCCACCAAGTTTC
TCTGCACGCCTGGCACTGCCCCGCCTACTGCTGCCCCTACTGCTACCCCT
ACTGCTGCCCCTACTGCTGCCCCTTCTGTCTAG
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Coding sequence (CDS) from alignment at chr6:121323..121955+

>NO06G00280.1 ID=NO06G00280.1|Name=NO06G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr6:121323..121955+ (Nannochloropsis oceanica)
ATGCGTCGCGCTCTTTCTCTGGTTGCCCTTGGCGTCACACTCGCCCTCAC
GGCGGCTGAGACTGCGCCGACGTTGATTCTTACCTCCATCAAGGCAGTTG
ACACGACCAGGGCAAACAAGGACCAATGGAGTGTCAAGGGCTACCTCAAC
GACCCTGATGGGAATGCTATCCTGGCCTTTGGTGACACTGGCTTGACCGC
GCTGCTTGCAAACGGGAACGAAGACACAGTGAGTGAAACGGACTTTGACG
CGGATGATTGCAGACTGCTCAACAACGATAAGGGAGTCATTTGCAAGGTA
ACGGGCGCCCGCCTCTCGCTCAAGAGGACTAAGAGAGTACCCAAGGACGC
CATGCTGGAGGTGCAGAGGAACCGCAACACGACCACCGCCTCTTCCTACT
ACAGGGTTTCGGGTGTTTTCCGCCGTCAGGAGTTCGAAAACACTCTTTCG
TCGCCTCTGATTGCTGCCTTCGGCATTGAAGGCGCAGATGAGATCTCTGA
TATCAATTATAAGTGCACTGAGAAAGTAGGAACCAGGGCCACCAAGTTTC
TCTGCACGCCTGGCACTGCCCCGCCTACTGCTGCCCCTACTGCTACCCCT
ACTGCTGCCCCTACTGCTGCCCCTTCTGTCTAG
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Synonyms
Publications