NO05G05370, NO05G05370 (gene) Nannochloropsis oceanica

Overview
NameNO05G05370
Unique NameNO05G05370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1702
Alignment locationchr5:1440310..1442011 +

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Properties
Property NameValue
DescriptionSignal recognition particle 19 kDa
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1440310..1442011 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR036521SRP19-like_sf
IPR002778Signal_recog_particle_SRP19
Homology
[Close]
BLAST of NO05G05370 vs. NCBI_GenBank
Match: EWM27860.1 (signal recognition particle 19 kda [Nannochloropsis gaditana])

HSP 1 Score: 289.3 bits (739), Expect = 1.100e-74
Identity = 141/178 (79.21%), Postives = 159/178 (89.33%), Query Frame = 0 
Query:    1 MQRQQREEERIQGAAMSAAMAQAEALGMTPEELQQTIEQMNMHEQHHVVCYPGPQGDRDQEKFLEDSKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVELKDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRKIRLEAEA 179
            MQRQ+REEERI  AAM+AA++QAEALGMTPEELQQTI+QM++H+QH +V YPG +  RDQE+ LEDSKTFVT+WPNYLD +K+L QGRRIPK+KACP PSVHDISDLLVQW LAHIVEQHKRYPRDWL YGRV+VELKD  TG  LHPDFPSRRAL+LKLGE IP LSSRK+RLEAEA
Sbjct:    1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSR-PRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEA 177
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BLAST of NO05G05370 vs. NCBI_GenBank
Match: XP_005855502.1 (signal recognition particle subunit SRP19 [Nannochloropsis gaditana CCMP526] >EKU20860.1 signal recognition particle subunit SRP19 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 277.7 bits (709), Expect = 3.400e-71
Identity = 135/171 (78.95%), Postives = 152/171 (88.89%), Query Frame = 0 
Query:    1 MQRQQREEERIQGAAMSAAMAQAEALGMTPEELQQTIEQMNMHEQHHVVCYPGPQGDRDQEKFLEDSKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVELKDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRK 172
            MQRQ+REEERI  AAM+AA++QAEALGMTPEELQQTI+QM++H+QH +V YPG +  RDQE+ LEDSKTFVT+WPNYLD +K+L QGRRIPK+KACP PSVHDISDLLVQW LAHIVEQHKRYPRDWL YGRV+VELKD  TG  LHPDFPSRRAL+LKLGE IP LSSRK
Sbjct:    1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSR-PRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRK 170
[Close]
BLAST of NO05G05370 vs. NCBI_GenBank
Match: XP_008915581.1 (hypothetical protein PPTG_19074, partial [Phytophthora parasitica INRA-310] >ETM99101.1 hypothetical protein PPTG_19074, partial [Phytophthora parasitica INRA-310])

HSP 1 Score: 121.7 bits (304), Expect = 3.200e-24
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 0 
Query:   67 SKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVEL-KDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRKIRLEAEA 179
            + TF+T +PNY+D  K++ QGRRIPK  AC  P   ++S++   ++L H++E  K+YPRDWLV GR++V L +D+ T +  +PD P+R+ LM+K+ E IP L SRK+RLE EA
Sbjct:  142 TSTFMTFYPNYIDNKKTVQQGRRIPKQNACETPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRDNGTPE--NPDIPNRKTLMIKMAELIPKLQSRKVRLEKEA 252
[Close]
BLAST of NO05G05370 vs. NCBI_GenBank
Match: KUF85013.1 (Signal recognition particle 19 kDa protein [Phytophthora nicotianae])

HSP 1 Score: 121.7 bits (304), Expect = 3.200e-24
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 0 
Query:   67 SKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVEL-KDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRKIRLEAEA 179
            + TF+T +PNY+D  K++ QGRRIPK  AC  P   ++S++   ++L H++E  K+YPRDWLV GR++V L +D+ T +  +PD P+R+ LM+K+ E IP L SRK+RLE EA
Sbjct:  129 TSTFMTFYPNYIDNKKTVQQGRRIPKQNACETPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRDNGTPE--NPDIPNRKTLMIKMAELIPKLQSRKVRLEKEA 239
[Close]
BLAST of NO05G05370 vs. NCBI_GenBank
Match: ETI30568.1 (hypothetical protein F443_22305, partial [Phytophthora parasitica P1569] >ETL77635.1 hypothetical protein L917_21419, partial [Phytophthora parasitica] >ETM30890.1 hypothetical protein L914_21431, partial [Phytophthora parasitica] >ETO59325.1 hypothetical protein F444_22299, partial [Phytophthora parasitica P1976])

HSP 1 Score: 121.3 bits (303), Expect = 4.100e-24
Identity = 55/113 (48.67%), Postives = 80/113 (70.80%), Query Frame = 0 
Query:   67 SKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVEL-KDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRKIRLEAEA 179
            + TF+T +PNY+D  K++ QGRRIPK  AC  P   ++S++   ++L H++E  K+YPRDWLV GR++V L +D  T +  +PD P+R+ LM+K+ E IP L SRK+RLE EA
Sbjct:  134 TSTFMTFYPNYIDNKKTVQQGRRIPKQNACETPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRDDGTPE--NPDIPNRKTLMIKMAELIPKLQSRKVRLEKEA 244
[Close]
BLAST of NO05G05370 vs. NCBI_GenBank
Match: ETK70969.1 (hypothetical protein L915_21698, partial [Phytophthora parasitica] >ETP28516.1 hypothetical protein F442_22186, partial [Phytophthora parasitica P10297])

HSP 1 Score: 121.3 bits (303), Expect = 4.100e-24
Identity = 55/113 (48.67%), Postives = 80/113 (70.80%), Query Frame = 0 
Query:   67 SKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVEL-KDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRKIRLEAEA 179
            + TF+T +PNY+D  K++ QGRRIPK  AC  P   ++S++   ++L H++E  K+YPRDWLV GR++V L +D  T +  +PD P+R+ LM+K+ E IP L SRK+RLE EA
Sbjct:  142 TSTFMTFYPNYIDNKKTVQQGRRIPKQNACETPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRDDGTPE--NPDIPNRKTLMIKMAELIPKLQSRKVRLEKEA 252
[Close]
BLAST of NO05G05370 vs. NCBI_GenBank
Match: ETL24415.1 (hypothetical protein L916_21567, partial [Phytophthora parasitica])

HSP 1 Score: 119.4 bits (298), Expect = 1.600e-23
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 0 
Query:   67 SKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVEL-KDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRKIRLEAEA 179
            + TF+T +PNY+D  K++ QGRRIPK  AC  P   ++S++   ++L H++E   +YPRDWLV GR++V L +D  T +  +PD P+R+ LM+K+ E IP L SRK+RLE EA
Sbjct:  142 TSTFMTFYPNYIDNKKTVQQGRRIPKQNACETPIADEMSEVCTYFKLPHVLEPANKYPRDWLVSGRIRVRLVRDDGTPE--NPDIPNRKTLMIKMAELIPKLQSRKVRLEKEA 252
[Close]
BLAST of NO05G05370 vs. NCBI_GenBank
Match: ETP00364.1 (hypothetical protein F441_22211, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 119.4 bits (298), Expect = 1.600e-23
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 0 
Query:   67 SKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVEL-KDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRKIRLEAEA 179
            + TF+T +PNY+D  K++ QGRRIPK  AC  P   ++S++   ++L H++E   +YPRDWLV GR++V L +D  T +  +PD P+R+ LM+K+ E IP L SRK+RLE EA
Sbjct:  142 TSTFMTFYPNYIDNKKTVQQGRRIPKQNACETPIADEMSEVCTYFKLPHVLEPANKYPRDWLVSGRIRVRLVRDDGTPE--NPDIPNRKTLMIKMAELIPKLQSRKVRLEKEA 252
[Close]
BLAST of NO05G05370 vs. NCBI_GenBank
Match: OWZ14482.1 (Transmembrane protein [Phytophthora megakarya])

HSP 1 Score: 119.4 bits (298), Expect = 1.600e-23
Identity = 54/113 (47.79%), Postives = 81/113 (71.68%), Query Frame = 0 
Query:   67 SKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVEL-KDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRKIRLEAEA 179
            + TF T +PNY+D  K++ QGRRIP++KAC KP   ++S++   ++L H++E  K+YPRDWLV GR++V L +D  T +  + + P+R+ LM+K+ E IP L SRK+RLE EA
Sbjct:  131 TSTFFTFYPNYIDNKKTVQQGRRIPQEKACEKPIADEMSEVCTYFKLPHVLEPSKKYPRDWLVSGRIRVRLVRDDGTPE--NAEIPNRKTLMVKMAELIPKLQSRKVRLEKEA 241
[Close]
BLAST of NO05G05370 vs. NCBI_GenBank
Match: CCA20872.1 (transmembrane protein putative [Albugo laibachii Nc14])

HSP 1 Score: 119.0 bits (297), Expect = 2.000e-23
Identity = 63/164 (38.41%), Postives = 95/164 (57.93%), Query Frame = 0 
Query:   16 MSAAMAQAEALGMTPEELQQTIEQMNMHEQHHVVCYPGPQGDRDQEKFLEDSKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVELKDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRKIRLEAEAA 180
            M   M   ++ GM P E             H V+ Y G   D   +      ++F+TI+PNY++  K+L  GRR PK +AC  P V ++S++   + L H++E HKRYPRDW+V GRV+V L+++ + +  +P+  SR+ LM+++G  IP L SR  RLE EAA
Sbjct:   77 MMKMMRSGQSNGMVPPEFNGI--------PHGVIVYHGISKDTPID------RSFITIYPNYINALKALALGRRTPKSQACDNPLVEELSEICAYFNLPHLIETHKRYPRDWMVLGRVRVRLRNA-SNEWENPNIQSRKQLMVQMGSLIPKLQSRAKRLEKEAA 225
The following BLAST results are available for this feature:
BLAST of NO05G05370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27860.11.100e-7479.21signal recognition particle 19 kda [Nannochloropsi... [more]
XP_005855502.13.400e-7178.95signal recognition particle subunit SRP19 [Nannoch... [more]
XP_008915581.13.200e-2448.67hypothetical protein PPTG_19074, partial [Phytopht... [more]
KUF85013.13.200e-2448.67Signal recognition particle 19 kDa protein [Phytop... [more]
ETI30568.14.100e-2448.67hypothetical protein F443_22305, partial [Phytopht... [more]
ETK70969.14.100e-2448.67hypothetical protein L915_21698, partial [Phytopht... [more]
ETL24415.11.600e-2347.79hypothetical protein L916_21567, partial [Phytopht... [more]
ETP00364.11.600e-2347.79hypothetical protein F441_22211, partial [Phytopht... [more]
OWZ14482.11.600e-2347.79Transmembrane protein [Phytophthora megakarya][more]
CCA20872.12.000e-2338.41transmembrane protein putative [Albugo laibachii N... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003306NSK003306Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05370.1NO05G05370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101134g1gene2701Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05370.1NO05G05370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05370 ID=NO05G05370|Name=NO05G05370|organism=Nannochloropsis oceanica|type=gene|length=1702bp
TATCAATCGCTCGCTTCAGCTTCTCGCCCTCGCCTCAATCATCATCAAGC
CTTCCCTTACCCACAACGTACGGCACGCAAGCTTGAGAAAGAGGACGAGC
AGCAGTGCTAGCAGCATCTACATCAGTAGACACAGTATCAGTTCCAGTAT
CCGCATTAAAGCACACGCAGTACTCACCTTCGCCTGCCTGCCACCCTCCC
CAGCCCCCAGCCGCTTCCTCTCCTCCCTCTCCTCCCACAGGTCGCAAGTC
ATGCAGCGGCAACAACGGGAAGAGGAGCGCATTCAAGGCGCAGCCATGAG
TGCTGCCATGGCACAGGCAGAAGCATTGGGCATGACACCTgtatgtagcc
agcctgcggggtggattgagagagggagaactggttgggaggaggggagg
cacagggcggtgtggaggagtggatcaaatgtgcctgtctgttaccccgc
tgaatttgttacctttgttcatgcacgtcatttcttgctttcgccatacc
cactgtacgttttagGAGGAGTTGCAGCAAACCATCGAGCAAATGAACAT
GCACGAACAGCACCACGTCGTCTGCTACCCTGGCCCTCAGGGAGACCGAG
ATCAGGAGAAATTTTTGGAGGACAGCAAGgtacacggttaagtctagatg
acgagcccgggtacctaataaggcatttgtagagaaagaaggaaaggatg
gcgtggctcttggcttcctacgaaaagggagatcaaaagctggctcgtcc
tgacgctcctccctccctcccacccgctctccgccccctcttcctttcgc
tcagACCTTTGTCACTATCTGGCCCAACTATTTGGACGTCGACAAGAGCC
TCCCTCAAGGCCGGCGGATCCCGAAGGACAAAGCCTGCCCCAAGCCGTCC
GTCCACGACATCTCAGACCTTCTGGTCCAGTGGCGACTGGCGCACATCGT
CGAGCAGCATAAAAGgtgccctcttccctccctccctccctccctccctc
cctccctccctccctgtctatccaccttctagtttccatccttaattcaa
gcatggatacccaaggacgtatagatccaaccgggaaaaacaggaaacca
tctcaaatcgctttcacaccctgctcgccctccctccctccctccctctc
tccctccctccctccccagGTACCCGCGTGACTGGCTGGTGTACGGGCGC
GTAAAGGTTGAGCTGAAAGATAGCAAGACGGGCAAGCAGCTGCATCCAGA
CTTCCCTTCGAGAAGGGCCTTGATGCTCAAGCTCGgtagggagggaggga
aggagggagggaagaaagaaatatgataatttgacgcactattcaatgga
tctcattaaacgtgcccgcccctttccatcactcactgcctttacccccc
tccctccctccctccctccctccctttctccctctgtttcctcctcagGT
GAGTGCATTCCCTCTCTCAGCAGTCGGAAGATCCGCCTAGAGGCAGAAGC
CGCGGGCCTCAGGGCGGCACAGCAGAAGAACGCAGCAGCAGCAGCGGCGG
CGGCAACAGCCGCATCGACGGCTGCAGCGGGGGCGGGAGGAGGAGAAGGA
GGGGCAGAAGGAGGGGGGGGGGTGGCGGGAATCCGAAGAAAAAGAAGGGG
AAGAAGGGGAGGAAGTAGTTCGAAAGGAGTGCGGGAGGGGAAAAAGAAAT
AG
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protein sequence of NO05G05370.1

>NO05G05370.1-protein ID=NO05G05370.1-protein|Name=NO05G05370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MQRQQREEERIQGAAMSAAMAQAEALGMTPEELQQTIEQMNMHEQHHVVC
YPGPQGDRDQEKFLEDSKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPS
VHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVELKDSKTGKQLHPDF
PSRRALMLKLGECIPSLSSRKIRLEAEAAGLRAAQQKNAAAAAAAATAAS
TAAAGAGGGEGGAEGGGGVAGIRRKRRGRRGGSSSKGVREGKKK*
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Synonyms
Publications