NO05G05370.1, NO05G05370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05370.1
Unique NameNO05G05370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length985
Alignment locationchr5:1440310..1442011 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1440310..1442011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05370.1 vs.
Match: EWM27860.1 (signal recognition particle 19 kda [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 2.500e-82
Identity = 174/231 (75.32%), Postives = 199/231 (86.15%), Query Frame = 0 
Query:    1 MQRQQREEERIQGAAMSAAMAQAEALGMTPEELQQTIEQMNMHEQHHVVCYPGPQGDRDQEKFLEDSKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPSVHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVELKDSKTGKQLHPDFPSRRALMLKLGECIPSLSSRKIRLEAEAAGLRAAQQKNAAAAAAAATAASTAAAGAGGGEGGAEGGGGVAGIRRKRRGRRG 232
            MQRQ+REEERI  AAM+AA++QAEALGMTPEELQQTI+QM++H+QH +V YPG +  RDQE+ LEDSKTFVT+WPNYLD +K+L QGRRIPK+KACP PSVHDISDLLVQW LAHIVEQHKRYPRDWL YGRV+VELKD  TG  LHPDFPSRRAL+LKLGE IP LSSRK+RLEAEAA L+AAQQKNAAAAAA+AT       GAGGGE G EGGGG  G R+K++G++G
Sbjct:    1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSR-PRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASAT-----PLGAGGGESG-EGGGG--GNRKKKKGKKG 222
The following BLAST results are available for this feature:
BLAST of NO05G05370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27860.12.500e-8275.32signal recognition particle 19 kda [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05370NO05G05370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05370.1NO05G05370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05370.1.cds1NO05G05370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05370.1.cds2NO05G05370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05370.1.cds3NO05G05370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05370.1.cds4NO05G05370.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05370.1.cds5NO05G05370.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05370.1 ID=NO05G05370.1|Name=NO05G05370.1|organism=Nannochloropsis oceanica|type=mRNA|length=985bp
TATCAATCGCTCGCTTCAGCTTCTCGCCCTCGCCTCAATCATCATCAAGC
CTTCCCTTACCCACAACGTACGGCACGCAAGCTTGAGAAAGAGGACGAGC
AGCAGTGCTAGCAGCATCTACATCAGTAGACACAGTATCAGTTCCAGTAT
CCGCATTAAAGCACACGCAGTACTCACCTTCGCCTGCCTGCCACCCTCCC
CAGCCCCCAGCCGCTTCCTCTCCTCCCTCTCCTCCCACAGGTCGCAAGTC
ATGCAGCGGCAACAACGGGAAGAGGAGCGCATTCAAGGCGCAGCCATGAG
TGCTGCCATGGCACAGGCAGAAGCATTGGGCATGACACCTGAGGAGTTGC
AGCAAACCATCGAGCAAATGAACATGCACGAACAGCACCACGTCGTCTGC
TACCCTGGCCCTCAGGGAGACCGAGATCAGGAGAAATTTTTGGAGGACAG
CAAGACCTTTGTCACTATCTGGCCCAACTATTTGGACGTCGACAAGAGCC
TCCCTCAAGGCCGGCGGATCCCGAAGGACAAAGCCTGCCCCAAGCCGTCC
GTCCACGACATCTCAGACCTTCTGGTCCAGTGGCGACTGGCGCACATCGT
CGAGCAGCATAAAAGGTACCCGCGTGACTGGCTGGTGTACGGGCGCGTAA
AGGTTGAGCTGAAAGATAGCAAGACGGGCAAGCAGCTGCATCCAGACTTC
CCTTCGAGAAGGGCCTTGATGCTCAAGCTCGGTGAGTGCATTCCCTCTCT
CAGCAGTCGGAAGATCCGCCTAGAGGCAGAAGCCGCGGGCCTCAGGGCGG
CACAGCAGAAGAACGCAGCAGCAGCAGCGGCGGCGGCAACAGCCGCATCG
ACGGCTGCAGCGGGGGCGGGAGGAGGAGAAGGAGGGGCAGAAGGAGGGGG
GGGGGTGGCGGGAATCCGAAGAAAAAGAAGGGGAAGAAGGGGAGGAAGTA
GTTCGAAAGGAGTGCGGGAGGGGAAAAAGAAATAG
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protein sequence of NO05G05370.1

>NO05G05370.1-protein ID=NO05G05370.1-protein|Name=NO05G05370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MQRQQREEERIQGAAMSAAMAQAEALGMTPEELQQTIEQMNMHEQHHVVC
YPGPQGDRDQEKFLEDSKTFVTIWPNYLDVDKSLPQGRRIPKDKACPKPS
VHDISDLLVQWRLAHIVEQHKRYPRDWLVYGRVKVELKDSKTGKQLHPDF
PSRRALMLKLGECIPSLSSRKIRLEAEAAGLRAAQQKNAAAAAAAATAAS
TAAAGAGGGEGGAEGGGGVAGIRRKRRGRRGGSSSKGVREGKKK*
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mRNA from alignment at chr5:1440310..1442011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05370.1 ID=NO05G05370.1|Name=NO05G05370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp|location=Sequence derived from alignment at chr5:1440310..1442011+ (Nannochloropsis oceanica)
TATCAATCGCTCGCTTCAGCTTCTCGCCCTCGCCTCAATCATCATCAAGC
CTTCCCTTACCCACAACGTACGGCACGCAAGCTTGAGAAAGAGGACGAGC
AGCAGTGCTAGCAGCATCTACATCAGTAGACACAGTATCAGTTCCAGTAT
CCGCATTAAAGCACACGCAGTACTCACCTTCGCCTGCCTGCCACCCTCCC
CAGCCCCCAGCCGCTTCCTCTCCTCCCTCTCCTCCCACAGGTCGCAAGTC
ATGCAGCGGCAACAACGGGAAGAGGAGCGCATTCAAGGCGCAGCCATGAG
TGCTGCCATGGCACAGGCAGAAGCATTGGGCATGACACCTGTATGTAGCC
AGCCTGCGGGGTGGATTGAGAGAGGGAGAACTGGTTGGGAGGAGGGGAGG
CACAGGGCGGTGTGGAGGAGTGGATCAAATGTGCCTGTCTGTTACCCCGC
TGAATTTGTTACCTTTGTTCATGCACGTCATTTCTTGCTTTCGCCATACC
CACTGTACGTTTTAGGAGGAGTTGCAGCAAACCATCGAGCAAATGAACAT
GCACGAACAGCACCACGTCGTCTGCTACCCTGGCCCTCAGGGAGACCGAG
ATCAGGAGAAATTTTTGGAGGACAGCAAGGTACACGGTTAAGTCTAGATG
ACGAGCCCGGGTACCTAATAAGGCATTTGTAGAGAAAGAAGGAAAGGATG
GCGTGGCTCTTGGCTTCCTACGAAAAGGGAGATCAAAAGCTGGCTCGTCC
TGACGCTCCTCCCTCCCTCCCACCCGCTCTCCGCCCCCTCTTCCTTTCGC
TCAGACCTTTGTCACTATCTGGCCCAACTATTTGGACGTCGACAAGAGCC
TCCCTCAAGGCCGGCGGATCCCGAAGGACAAAGCCTGCCCCAAGCCGTCC
GTCCACGACATCTCAGACCTTCTGGTCCAGTGGCGACTGGCGCACATCGT
CGAGCAGCATAAAAGGTGCCCTCTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTGTCTATCCACCTTCTAGTTTCCATCCTTAATTCAA
GCATGGATACCCAAGGACGTATAGATCCAACCGGGAAAAACAGGAAACCA
TCTCAAATCGCTTTCACACCCTGCTCGCCCTCCCTCCCTCCCTCCCTCTC
TCCCTCCCTCCCTCCCCAGGTACCCGCGTGACTGGCTGGTGTACGGGCGC
GTAAAGGTTGAGCTGAAAGATAGCAAGACGGGCAAGCAGCTGCATCCAGA
CTTCCCTTCGAGAAGGGCCTTGATGCTCAAGCTCGGTAGGGAGGGAGGGA
AGGAGGGAGGGAAGAAAGAAATATGATAATTTGACGCACTATTCAATGGA
TCTCATTAAACGTGCCCGCCCCTTTCCATCACTCACTGCCTTTACCCCCC
TCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCTGTTTCCTCCTCAGGT
GAGTGCATTCCCTCTCTCAGCAGTCGGAAGATCCGCCTAGAGGCAGAAGC
CGCGGGCCTCAGGGCGGCACAGCAGAAGAACGCAGCAGCAGCAGCGGCGG
CGGCAACAGCCGCATCGACGGCTGCAGCGGGGGCGGGAGGAGGAGAAGGA
GGGGCAGAAGGAGGGGGGGGGGTGGCGGGAATCCGAAGAAAAAGAAGGGG
AAGAAGGGGAGGAAGTAGTTCGAAAGGAGTGCGGGAGGGGAAAAAGAAAT
AG
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Coding sequence (CDS) from alignment at chr5:1440310..1442011+

>NO05G05370.1 ID=NO05G05370.1|Name=NO05G05370.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr5:1440310..1442011+ (Nannochloropsis oceanica)
ATGCAGCGGCAACAACGGGAAGAGGAGCGCATTCAAGGCGCAGCCATGAG
TGCTGCCATGGCACAGGCAGAAGCATTGGGCATGACACCTGAGGAGTTGC
AGCAAACCATCGAGCAAATGAACATGCACGAACAGCACCACGTCGTCTGC
TACCCTGGCCCTCAGGGAGACCGAGATCAGGAGAAATTTTTGGAGGACAG
CAAGACCTTTGTCACTATCTGGCCCAACTATTTGGACGTCGACAAGAGCC
TCCCTCAAGGCCGGCGGATCCCGAAGGACAAAGCCTGCCCCAAGCCGTCC
GTCCACGACATCTCAGACCTTCTGGTCCAGTGGCGACTGGCGCACATCGT
CGAGCAGCATAAAAGGTACCCGCGTGACTGGCTGGTGTACGGGCGCGTAA
AGGTTGAGCTGAAAGATAGCAAGACGGGCAAGCAGCTGCATCCAGACTTC
CCTTCGAGAAGGGCCTTGATGCTCAAGCTCGGTGAGTGCATTCCCTCTCT
CAGCAGTCGGAAGATCCGCCTAGAGGCAGAAGCCGCGGGCCTCAGGGCGG
CACAGCAGAAGAACGCAGCAGCAGCAGCGGCGGCGGCAACAGCCGCATCG
ACGGCTGCAGCGGGGGCGGGAGGAGGAGAAGGAGGGGCAGAAGGAGGGGG
GGGGGTGGCGGGAATCCGAAGAAAAAGAAGGGGAAGAAGGGGAGGAAGTA
GTTCGAAAGGAGTGCGGGAGGGGAAAAAGAAATAG
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Synonyms
Publications